-
1
-
-
33744830059
-
A SNP caused loss of seed shattering during rice domestication
-
10.1126/science.1126410 16614172
-
Konishi S Izawa T Lin SY Ebana K Fukuta Y Sasaki T Yano M A SNP caused loss of seed shattering during rice domestication Science 2006, 312:1392-1396. 10.1126/science.1126410 16614172
-
(2006)
Science
, vol.312
, pp. 1392-1396
-
-
Konishi, S.1
Izawa, T.2
Lin, S.Y.3
Ebana, K.4
Fukuta, Y.5
Sasaki, T.6
Yano, M.7
-
2
-
-
18144376355
-
Allelic variation at the linked AP1 and PhyC loci in hexaploid wheat is associated but not perfectly correlated with vernalization response
-
10.1007/s00122-005-1938-3 15765225
-
Beales J Laurie DA Devos KM Allelic variation at the linked AP1 and PhyC loci in hexaploid wheat is associated but not perfectly correlated with vernalization response Theor Appl Genet 2005, 110:1099-1107. 10.1007/ s00122-005-1938-3 15765225
-
(2005)
Theor Appl Genet
, vol.110
, pp. 1099-1107
-
-
Beales, J.1
Laurie, D.A.2
Devos, K.M.3
-
3
-
-
34548546841
-
A soybean transcript map: Gene distribution, haplotype and SNP analysis
-
10.1534/genetics.107.070821
-
Choi I-Y Hyten DL Matukumalli LK Song Q Chaky JM Quigley CV Chase K Lark KG Reiter RS Yoon M-S,et al A soybean transcript map: Gene distribution, haplotype and SNP analysis Genetics 2006, 176:685-696. 10.1534/ genetics.107.070821
-
(2006)
Genetics
, vol.176
, pp. 685-696
-
-
Choi, I.-Y.1
Hyten, D.L.2
Matukumalli, L.K.3
Song, Q.4
Chaky, J.M.5
Quigley, C.V.6
Chase, K.7
Lark, K.G.8
Reiter, R.S.9
Yoon, M.-S.10
-
4
-
-
28344445873
-
Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress
-
10.1007/s00438-005-0046-z 16244872
-
Rostoks N Mudie S Cardle L Russell J Ramsay L Booth A Svensson JT Wanamaker SI Walia H Rodriguez EM, et al Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress Mol Genet Genomics 2005, 274:515-527. 10.1007/s00438-005-0046-z 16244872
-
(2005)
Mol Genet Genomics
, vol.274
, pp. 515-527
-
-
Rostoks, N.1
Mudie, S.2
Cardle, L.3
Russell, J.4
Ramsay, L.5
Booth, A.6
Svensson, J.T.7
Wanamaker, S.I.8
Walia, H.9
Rodriguez, E.M.10
-
6
-
-
4644353880
-
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments
-
515328 15342564 10.1101/gr.2479404
-
Feltus FA Wan J Schulze SR Estill JC Jiang N Paterson AH An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments Genome Res 2004, 14:1812-1819. 515328 15342564 10.1101/ gr.2479404
-
(2004)
Genome Res
, vol.14
, pp. 1812-1819
-
-
Feltus, F.A.1
Wan, J.2
Schulze, S.R.3
Estill, J.C.4
Jiang, N.5
Paterson, A.H.6
-
7
-
-
0016763314
-
Characterization of the wheat genome by renaturation kinetics
-
10.1007/BF00283468
-
Smith DB Flavell RB Characterization of the wheat genome by renaturation kinetics Chromosoma 1975, 50:223-242. 10.1007/BF00283468
-
(1975)
Chromosoma
, vol.50
, pp. 223-242
-
-
Smith, D.B.1
Flavell, R.B.2
-
8
-
-
0346373740
-
Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags
-
10.1007/s00438-003-0939-7
-
Mochida K Yamazaki Y Ogihara Y Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags Mol Gen Genomics 2003, 270:371-377. 10.1007/s00438-003-0939-7
-
(2003)
Mol Gen Genomics
, vol.270
, pp. 371-377
-
-
Mochida, K.1
Yamazaki, Y.2
Ogihara, Y.3
-
9
-
-
34547672834
-
Grinding up wheat: A massive loss of nucleotide diversity since domestication
-
10.1093/molbev/msm077 17443011
-
Haudry A Cenci A Ravel C Bataillon T Brunel D Poncet C Hochu I Poirer S Santoni S Glemin S, et al Grinding up wheat: A massive loss of nucleotide diversity since domestication Mol Biol Evol 2007, 24:1506-1517. 10.1093/molbev/msm077 17443011
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1506-1517
-
-
Haudry, A.1
Cenci, A.2
Ravel, C.3
Bataillon, T.4
Brunel, D.5
Poncet, C.6
Hochu, I.7
Poirer, S.8
Santoni, S.9
Glemin, S.10
-
10
-
-
0042201892
-
Mining single-nucleotide polymorphisms from hexaploid wheat ESTs
-
10.1139/g03-027 12834059
-
Somers DJ Kirkpatrick R Moniwa M Walsh A Mining single-nucleotide polymorphisms from hexaploid wheat ESTs Genome 2003, 46:431-437. 10.1139/ g03-027 12834059
-
(2003)
Genome
, vol.46
, pp. 431-437
-
-
Somers, D.J.1
Kirkpatrick, R.2
Moniwa, M.3
Walsh, A.4
-
11
-
-
84875969261
-
-
Wheat SNP Database http://wheat.pw.usda.gov/SNP/new/index.shtml
-
Wheat SNP Database
-
-
-
12
-
-
34250790333
-
SFP genotyping from Affymetrix arrays is robust but largely detects cis-acting expression regulators
-
1894608 17409081 10.1534/genetics.106.067843
-
Luo ZW Potokina E Druka A Wise R Waugh R Kearsey MJ SFP genotyping from Affymetrix arrays is robust but largely detects cis-acting expression regulators Genetics 2007, 176:789-800. 1894608 17409081 10.1534/ genetics.106.067843
-
(2007)
Genetics
, vol.176
, pp. 789-800
-
-
Luo, Z.W.1
Potokina, E.2
Druka, A.3
Wise, R.4
Waugh, R.5
Kearsey, M.J.6
-
13
-
-
33744810323
-
High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis
-
1473188 16702412 10.1101/gr.5011206
-
West MAL van Leeuwen H Kozik A Kliebenstein DJ Doerge RW St Clair DA Michelmore RW High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis Genome Res 2006, 16:787-795. 1473188 16702412 10.1101/gr.5011206
-
(2006)
Genome Res
, vol.16
, pp. 787-795
-
-
West, M.A.L.1
van Leeuwen, H.2
Kozik, A.3
Kliebenstein, D.J.4
Doerge, R.W.5
St Clair, D.A.6
Michelmore, R.W.7
-
14
-
-
0032555671
-
Direct allelic variation scanning of the yeast genome
-
10.1126/science.281.5380.1194 9712584
-
Winzeler EA Richards DR Conway AR Goldstein AL Kalman S McCullough MJ McCusker JH Stevens DA Wodicka L Lockhart DJ, et al Direct allelic variation scanning of the yeast genome Science 1998, 281:1194-1197. 10.1126/science.281.5380.1194 9712584
-
(1998)
Science
, vol.281
, pp. 1194-1197
-
-
Winzeler, E.A.1
Richards, D.R.2
Conway, A.R.3
Goldstein, A.L.4
Kalman, S.5
McCullough, M.J.6
McCusker, J.H.7
Stevens, D.A.8
Wodicka, L.9
Lockhart, D.J.10
-
15
-
-
0037348718
-
Large-scale identification of single-feature polymorphisms in complex genomes
-
430246 12618383 10.1101/gr.541303
-
Borevitz JO Liang D Plouffe D Chang HS Zhu T Weigel D Berry CC Winzeler E Chory J Large-scale identification of single-feature polymorphisms in complex genomes Genome Res 2003, 13:513-523. 430246 12618383 10.1101/ gr.541303
-
(2003)
Genome Res
, vol.13
, pp. 513-523
-
-
Borevitz, J.O.1
Liang, D.2
Plouffe, D.3
Chang, H.S.4
Zhu, T.5
Weigel, D.6
Berry, C.C.7
Winzeler, E.8
Chory, J.9
-
16
-
-
33749380600
-
A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome array hybridization
-
1564425 17044735 10.1371/journal.pgen.0020144
-
Singer T Fan Y Chang H Zhu T Hazen S Briggs S A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome array hybridization PLoS Genetics 2006, 2:e144. 1564425 17044735 10.1371/journal.pgen.0020144
-
(2006)
PLoS Genetics
, vol.2
-
-
Singer, T.1
Fan, Y.2
Chang, H.3
Zhu, T.4
Hazen, S.5
Briggs, S.6
-
17
-
-
27544488921
-
Single-feature polymorphism discovery in the barley transcriptome
-
1175974 15960806 10.1186/gb-2005-6-6-r54
-
Rostoks N Borevitz J Hedley P Russell J Mudie S Morris J Cardle L Marshall D Waugh R Single-feature polymorphism discovery in the barley transcriptome Genome Biol 2005, 6:R54. 1175974 15960806 10.1186/ gb-2005-6-6-r54
-
(2005)
Genome Biol
, vol.6
-
-
Rostoks, N.1
Borevitz, J.2
Hedley, P.3
Russell, J.4
Mudie, S.5
Morris, J.6
Cardle, L.7
Marshall, D.8
Waugh, R.9
-
18
-
-
55849095488
-
Single feature polymorphism discovery in rice
-
1808426 17372626 10.1371/journal.pone.0000284
-
Kumar R Qiu J Joshi T Valliyodan B Xu D Nguyen HT Single feature polymorphism discovery in rice PLoS ONE 2007, 2:e284. 1808426 17372626 10.1371/journal.pone.0000284
-
(2007)
PLoS ONE
, vol.2
-
-
Kumar, R.1
Qiu, J.2
Joshi, T.3
Valliyodan, B.4
Xu, D.5
Nguyen, H.T.6
-
19
-
-
27544454498
-
Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit
-
10.1093/bioinformatics/bti640 16118260
-
Cui X Xu J Asghar R Condamine P Svensson JT Wanamaker S Stein N Roose M Close TJ Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit Bioinformatics 2005, 21(21):3852-3858. 10.1093/bioinformatics/bti640 16118260
-
(2005)
Bioinformatics
, vol.21
, Issue.21
, pp. 3852-3858
-
-
Cui, X.1
Xu, J.2
Asghar, R.3
Condamine, P.4
Svensson, J.T.5
Wanamaker, S.6
Stein, N.7
Roose, M.8
Close, T.J.9
-
20
-
-
37249073867
-
Gene expression quantitative trait locus analysis of 16000 barley genes reveals a complex pattern of genome-wide transcriptional regulation
-
17944808
-
Potokina E Druka A Luo Z Wise R Waugh R Kearsey M Gene expression quantitative trait locus analysis of 16000 barley genes reveals a complex pattern of genome-wide transcriptional regulation Plant J 2008, 53:90-101. 17944808
-
(2008)
Plant J
, vol.53
, pp. 90-101
-
-
Potokina, E.1
Druka, A.2
Luo, Z.3
Wise, R.4
Waugh, R.5
Kearsey, M.6
-
21
-
-
47249151786
-
Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus
-
10.1007/s00122-008-0784-5 18470504
-
Coram TE Settles ML Wang M Chen X Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus Theor Appl Genet 2008, 117:401-411. 10.1007/s00122-008-0784-5 18470504
-
(2008)
Theor Appl Genet
, vol.117
, pp. 401-411
-
-
Coram, T.E.1
Settles, M.L.2
Wang, M.3
Chen, X.4
-
22
-
-
34547602290
-
Evaluation of target preparation methods for single-feature polymorphism detection in large complex plant genomes
-
10.2135/cropsci2007.02.0085tpg
-
Gore M Bradbury P Hogers R Kirst M Verstege E van Oeveren J Peleman J Buckler E van Eijk M, et al Evaluation of target preparation methods for single-feature polymorphism detection in large complex plant genomes Crop Sci 2007, 47:S-135-148. 10.2135/cropsci2007.02.0085tpg
-
(2007)
Crop Sci
, vol.47
-
-
Gore, M.1
Bradbury, P.2
Hogers, R.3
Kirst, M.4
Verstege, E.5
van Oeveren, J.6
Peleman, J.7
Buckler, E.8
van Eijk, M.9
-
23
-
-
0038444113
-
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms
-
430889 12695326 10.1101/gr.808603
-
Akhunov ED Goodyear AW Geng S Qi L Echalier B Gill BS Miftahudin Gustafson JP Lazo G Chao S et al The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms Genome Res 2003, 13:753-763. 430889 12695326 10.1101/ gr.808603
-
(2003)
Genome Res
, vol.13
, pp. 753-763
-
-
Akhunov, E.D.1
Goodyear, A.W.2
Geng, S.3
Qi, L.4
Echalier, B.5
Gill, B.S.6
Miftahudin Gustafson, J.P.7
Lazo, G.8
Chao, S.9
-
25
-
-
8744230085
-
A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.)
-
10.1007/s00122-004-1740-7 15490101
-
Somers DJ Isaac P Edwards K A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.) Theor Appl Genet 2004, 109:1105-1114. 10.1007/s00122-004-1740-7 15490101
-
(2004)
Theor Appl Genet
, vol.109
, pp. 1105-1114
-
-
Somers, D.J.1
Isaac, P.2
Edwards, K.3
-
26
-
-
67649408893
-
-
GrainGenes_SQL http://wheat.pw.usda.gov/cgi-bin/westsql/map_locus.cgi
-
GrainGenes_SQL
-
-
-
27
-
-
33646484347
-
Genomewide comparative analysis of alternative splicing in plants
-
1459036 16632598 10.1073/pnas.0602039103
-
Wang BB Brendel V Genomewide comparative analysis of alternative splicing in plants Proc Natl Acad Sci USA 2006, 103:7175-7180. 1459036 16632598 10.1073/pnas.0602039103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 7175-7180
-
-
Wang, B.B.1
Brendel, V.2
-
28
-
-
0032944534
-
Amplified fragment length polymorphism markers linked to a major quantitative trait locus controlling scab resistance in wheat
-
10.1094/PHYTO.1999.89.4.343 18944781
-
Bai G Kolb F Shaner G Domier LL Amplified fragment length polymorphism markers linked to a major quantitative trait locus controlling scab resistance in wheat Phytopathology 1999, 89:343-348. 10.1094/ PHYTO.1999.89.4.343 18944781
-
(1999)
Phytopathology
, vol.89
, pp. 343-348
-
-
Bai, G.1
Kolb, F.2
Shaner, G.3
Domier, L.L.4
-
29
-
-
0031904006
-
A microsatellite map of wheat
-
1460256 9691054
-
Röder M Korzun V Wendehake K Plaschke J Tixier M-H Leroy P Ganal M A microsatellite map of wheat Genetics 1998, 149:2007-2023. 1460256 9691054
-
(1998)
Genetics
, vol.149
, pp. 2007-2023
-
-
Röder, M.1
Korzun, V.2
Wendehake, K.3
Plaschke, J.4
Tixier, M.-H.5
Leroy, P.6
Ganal, M.7
-
30
-
-
0033848534
-
Isolation and mapping of microsatellite markers specific for the D genome of bread wheat
-
10.1139/gen-43-4-689 10984182
-
Pestsova E Ganal MW Röder MS Isolation and mapping of microsatellite markers specific for the D genome of bread wheat Genome 2000, 43:689-697. 10.1139/gen-43-4-689 10984182
-
(2000)
Genome
, vol.43
, pp. 689-697
-
-
Pestsova, E.1
Ganal, M.W.2
Röder, M.S.3
-
31
-
-
34347399464
-
Genome plasticity a key factor in the success of polyploid wheat under domestication
-
10.1126/science.1143986 17600208
-
Dubcovsky J Dvorak J Genome plasticity a key factor in the success of polyploid wheat under domestication Science 2007, 316:1862-1866. 10.1126/ science.1143986 17600208
-
(2007)
Science
, vol.316
, pp. 1862-1866
-
-
Dubcovsky, J.1
Dvorak, J.2
-
32
-
-
34250654964
-
Mapping translocation breakpoints using a wheat microarray
-
1888831 17439961 10.1093/nar/gkm148
-
Bhat PR Lukaszewski A Cui X Xu J Svensson JT Wanamaker S Waines JG Close TJ Mapping translocation breakpoints using a wheat microarray Nucl Acids Res 2007, 35:2936-2943. 1888831 17439961 10.1093/nar/gkm148
-
(2007)
Nucl Acids Res
, vol.35
, pp. 2936-2943
-
-
Bhat, P.R.1
Lukaszewski, A.2
Cui, X.3
Xu, J.4
Svensson, J.T.5
Wanamaker, S.6
Waines, J.G.7
Close, T.J.8
-
33
-
-
33847057265
-
Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.)
-
10.1139/G06-067 17110993
-
Ravel C Praud S Murigneux A Canaguier A Sapet F Samson D Balfourier F Dufour P Chalhoub B Brunel D, et al Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.) Genome 2006, 49:1131-1139. 10.1139/G06-067 17110993
-
(2006)
Genome
, vol.49
, pp. 1131-1139
-
-
Ravel, C.1
Praud, S.2
Murigneux, A.3
Canaguier, A.4
Sapet, F.5
Samson, D.6
Balfourier, F.7
Dufour, P.8
Chalhoub, B.9
Brunel, D.10
-
34
-
-
33745396006
-
Association mapping with single feature polymorphisms
-
1526505 16510789 10.1534/genetics.105.052720
-
Kim S Zhao K Jiang R Molitor J Borevitz JO Nordborg M Marjoram P Association mapping with single feature polymorphisms Genetics 2006, 173:1125-1133. 1526505 16510789 10.1534/genetics.105.052720
-
(2006)
Genetics
, vol.173
, pp. 1125-1133
-
-
Kim, S.1
Zhao, K.2
Jiang, R.3
Molitor, J.4
Borevitz, J.O.5
Nordborg, M.6
Marjoram, P.7
-
35
-
-
33747607258
-
Genetic diversity contribution to errors in short oligonucleotide microarray analysis
-
17309725 17309725
-
Kirst M Caldo R Casati P Tanimoto G Walbot V Wise RP Buckler ES Genetic diversity contribution to errors in short oligonucleotide microarray analysis Plant Biotechnol J 2006, 4(5):489-98. 17309725 17309725
-
(2006)
Plant Biotechnol J
, vol.4
, Issue.5
, pp. 489-498
-
-
Kirst, M.1
Caldo, R.2
Casati, P.3
Tanimoto, G.4
Walbot, V.5
Wise, R.P.6
Buckler, E.S.7
-
37
-
-
0021695885
-
Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomal location, and population dynamics
-
392284 6096873 10.1073/pnas.81.24.8014
-
Saghai-Maroof MA Soliman KM Jorgensen RA Allard RW Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomal location, and population dynamics Proc Natl Acad Sci USA 1984, 81:8014-8018. 392284 6096873 10.1073/pnas.81.24.8014
-
(1984)
Proc Natl Acad Sci USA
, vol.81
, pp. 8014-8018
-
-
Saghai-Maroof, M.A.1
Soliman, K.M.2
Jorgensen, R.A.3
Allard, R.W.4
-
38
-
-
7244257594
-
PerlPrimer: Cross-platform, graphical primer design for standard, bisulphite and real-time PCR
-
10.1093/bioinformatics/bth254 15073005
-
Marshall O PerlPrimer: Cross-platform, graphical primer design for standard, bisulphite and real-time PCR Bioinformatics 2004, 20:2471-2472. 10.1093/bioinformatics/bth254 15073005
-
(2004)
Bioinformatics
, vol.20
, pp. 2471-2472
-
-
Marshall, O.1
|