-
1
-
-
12644302211
-
Evidence of evolutionary up-regulation of the single active X chromosome in mammals based on Clc4 expression levels in Mus spretus and Mus musculus
-
Adler, D. A., E. I. Rugarli, P. A. Lingenfelter, K. Tsuchiya, D. Poslinski et al., 1997 Evidence of evolutionary up-regulation of the single active X chromosome in mammals based on Clc4 expression levels in Mus spretus and Mus musculus. Proc. Natl. Acad. Sci. USA 94: 9244-9248.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 9244-9248
-
-
Adler, D.A.1
Rugarli, E.I.2
Lingenfelter, P.A.3
Tsuchiya, K.4
Poslinski, D.5
-
2
-
-
84892536849
-
The genomic distribution of sex-biased genes in Drosophila ser-rata: X chromosome demasculinization, feminization, and hyperexpression in both sexes
-
Allen, S. L., R. Bonduriansky, and S. F. Chenoweth, 2013 The genomic distribution of sex-biased genes in Drosophila ser-rata: X chromosome demasculinization, feminization, and hyperexpression in both sexes. Genome Biol. Evol. 5: 1986-1994.
-
(2013)
Genome Biol. Evol
, vol.5
, pp. 1986-1994
-
-
Allen, S.L.1
Bonduriansky, R.2
Chenoweth, S.F.3
-
3
-
-
59149102602
-
Phylogenetic and functional assessment of orthologs inference projects and methods
-
Altenhoff, A. M., and C. Dessimoz, 2009 Phylogenetic and functional assessment of orthologs inference projects and methods. PLOS Comput. Biol. 5: e1000262.
-
(2009)
PLOS Comput. Biol
, vol.5
-
-
Altenhoff, A.M.1
Dessimoz, C.2
-
4
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S., and W. Huber, 2010 Differential expression analysis for sequence count data. Genome Biol. 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
5
-
-
3042678364
-
Sexual conflict and sexual selection: Lost in the chase
-
Arnqvist, G., 2004 Sexual conflict and sexual selection: lost in the chase. Evolution 58: 1383-1393.
-
(2004)
Evolution
, vol.58
, pp. 1383-1393
-
-
Arnqvist, G.1
-
6
-
-
44649176783
-
Sexual selection and maintenance of sex: Evidence from comparisons of rates of genomic accumulation of mutations and divergence of sex-related genes in sexual and hermaphroditic species of Caeno-rhabditis
-
Artieri, C. G., W. Haerty, B. P. Gupta, and R. S. Singh, 2008 Sexual selection and maintenance of sex: evidence from comparisons of rates of genomic accumulation of mutations and divergence of sex-related genes in sexual and hermaphroditic species of Caeno-rhabditis. Mol. Biol. Evol. 25: 972-979.
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 972-979
-
-
Artieri, C.G.1
Haerty, W.2
Gupta, B.P.3
Singh, R.S.4
-
7
-
-
84872519386
-
Sex-biased transcriptome evolution in Drosophila
-
Assis, R., Q. Zhou, and D. Bachtrog, 2012 Sex-biased transcriptome evolution in Drosophila. Genome Biol. Evol. 4: 1189-1200.
-
(2012)
Genome Biol. Evol
, vol.4
, pp. 1189-1200
-
-
Assis, R.1
Zhou, Q.2
Bachtrog, D.3
-
8
-
-
0021749591
-
The population-genetics of haplo-diploids and X-linked genes
-
Avery, P. J., 1984 The population-genetics of haplo-diploids and X-linked genes. Genet. Res. 44: 321-341.
-
(1984)
Genet. Res
, vol.44
, pp. 321-341
-
-
Avery, P.J.1
-
9
-
-
77957854239
-
Dosage compensation and demasculinization of X chromosomes in Drosophila
-
Bachtrog, D., N. R. Toda, and S. Lockton, 2010 Dosage compensation and demasculinization of X chromosomes in Drosophila. Curr. Biol. 20: 1476-1481.
-
(2010)
Curr. Biol
, vol.20
, pp. 1476-1481
-
-
Bachtrog, D.1
Toda, N.R.2
Lockton, S.3
-
10
-
-
47649117051
-
Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila
-
Baines, J. F., S. A. Sawyer, D. L. Hartl, and J. Parsch, 2008 Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila. Mol. Biol. Evol. 25: 1639-1650.
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 1639-1650
-
-
Baines, J.F.1
Sawyer, S.A.2
Hartl, D.L.3
Parsch, J.4
-
11
-
-
61849109937
-
Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes
-
Barriere, A., S. P. Yang, E. Pekarek, C. G. Thomas, E. S. Haag et al., 2009 Detecting heterozygosity in shotgun genome assemblies: lessons from obligately outcrossing nematodes. Genome Res. 19: 470-480.
-
(2009)
Genome Res
, vol.19
, pp. 470-480
-
-
Barriere, A.1
Yang, S.P.2
Pekarek, E.3
Thomas, C.G.4
Haag, E.S.5
-
12
-
-
0347716447
-
Meiotic pairing and imprinted X chromatin assembly in Caenorhabditis elegans
-
Bean, C. J., C. E. Schaner, and W. G. Kelly, 2004 Meiotic pairing and imprinted X chromatin assembly in Caenorhabditis elegans. Nat. Genet. 36: 100-105.
-
(2004)
Nat. Genet
, vol.36
, pp. 100-105
-
-
Bean, C.J.1
Schaner, C.E.2
Kelly, W.G.3
-
13
-
-
33750463354
-
MES-4: An autosome-associated histone methyltransfer-ase that participates in silencing the X chromosomes in the C. elegans germ line
-
Bender, L. B., J. Suh, C. R. Carroll, Y. Fong, I. M. Fingerman et al., 2006 MES-4: an autosome-associated histone methyltransfer-ase that participates in silencing the X chromosomes in the C. elegans germ line. Development 133: 3907-3917.
-
(2006)
Development
, vol.133
, pp. 3907-3917
-
-
Bender, L.B.1
Suh, J.2
Carroll, C.R.3
Fong, Y.4
Fingerman, I.M.5
-
14
-
-
76749160352
-
Differential localization and independent acquisition of the H3K9me2 and H3K9me3 chromatin modifications in the Caenorhabditis elegans adult germ line
-
Bessler, J. B., E. C. Andersen, and A. M. Villeneuve, 2010 Differential localization and independent acquisition of the H3K9me2 and H3K9me3 chromatin modifications in the Caenorhabditis elegans adult germ line. PLoS Genet. 6: e1000830.
-
(2010)
PLoS Genet
, vol.6
-
-
Bessler, J.B.1
Andersen, E.C.2
Villeneuve, A.M.3
-
15
-
-
0037142086
-
A global analysis of Caenorhabditis elegans operons
-
Blumenthal, T., D. Evans, C. D. Link, A. Guffanti, D. Lawson et al., 2002 A global analysis of Caenorhabditis elegans operons. Nature 417: 851-854.
-
(2002)
Nature
, vol.417
, pp. 851-854
-
-
Blumenthal, T.1
Evans, D.2
Link, C.D.3
Guffanti, A.4
Lawson, D.5
-
16
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand, D., M. Soumillon, A. Necsulea, P. Julien, G. Csardi et al., 2011 The evolution of gene expression levels in mammalian organs. Nature 478: 343-348.
-
(2011)
Nature
, vol.478
, pp. 343-348
-
-
Brawand, D.1
Soumillon, M.2
Necsulea, A.3
Julien, P.4
Csardi, G.5
-
17
-
-
0023501735
-
The relative rates of evolution of sex-chromosomes and autosomes
-
Charlesworth, B., J. A. Coyne, and N. H. Barton, 1987 The relative rates of evolution of sex-chromosomes and autosomes. Am. Nat. 130: 113-146.
-
(1987)
Am. Nat
, vol.130
, pp. 113-146
-
-
Charlesworth, B.1
Coyne, J.A.2
Barton, N.H.3
-
18
-
-
23644455954
-
Steps in the evolution of heteromorphic sex chromosomes
-
Charlesworth, D., B. Charlesworth, and G. Marais, 2005 Steps in the evolution of heteromorphic sex chromosomes. Heredity 95: 118-128.
-
(2005)
Heredity
, vol.95
, pp. 118-128
-
-
Charlesworth, D.1
Charlesworth, B.2
Marais, G.3
-
19
-
-
0036078675
-
Fourfold faster rate of genome rearrangement in nematodes than in Drosophila
-
Coghlan, A., and K. H. Wolfe, 2002 Fourfold faster rate of genome rearrangement in nematodes than in Drosophila. Genome Res. 12: 857-867.
-
(2002)
Genome Res
, vol.12
, pp. 857-867
-
-
Coghlan, A.1
Wolfe, K.H.2
-
20
-
-
23644449885
-
Intergenomic conflict revealed by patterns of sex-biased gene expression
-
Connallon, T., and L. L. Knowles, 2005 Intergenomic conflict revealed by patterns of sex-biased gene expression. Trends Genet. 21: 495-499.
-
(2005)
Trends Genet
, vol.21
, pp. 495-499
-
-
Connallon, T.1
Knowles, L.L.2
-
21
-
-
84855940430
-
Dosage compensation in Dro-sophila melanogaster: Epigenetic fine-tuning of chromosome-wide transcription
-
Conrad, T., and A. Akhtar, 2012 Dosage compensation in Dro-sophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription. Nat. Rev. Genet. 13: 123-134.
-
(2012)
Nat. Rev. Genet
, vol.13
, pp. 123-134
-
-
Conrad, T.1
Akhtar, A.2
-
22
-
-
1842527889
-
Using comparative genomic data to test for fast-x evolution
-
Counterman, B. A., D. Ortiz-Barrientos, and M. A. F. Noor, 2004 Using comparative genomic data to test for fast-x evolution. Evolution 58: 656-660.
-
(2004)
Evolution
, vol.58
, pp. 656-660
-
-
Counterman, B.A.1
Ortiz-Barrientos, D.2
Noor, M.A.F.3
-
23
-
-
69949089775
-
Condensin function in dosage compensation
-
Csankovszki, G., 2009 Condensin function in dosage compensation. Epigenetics 4: 212-215.
-
(2009)
Epigenetics
, vol.4
, pp. 212-215
-
-
Csankovszki, G.1
-
24
-
-
40849130956
-
Divergence times in Caenorhabditis and Dro-sophila inferred from direct estimates of the neutral mutation rate
-
Cutter, A. D., 2008 Divergence times in Caenorhabditis and Dro-sophila inferred from direct estimates of the neutral mutation rate. Mol. Biol. Evol. 25: 778-786.
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 778-786
-
-
Cutter, A.D.1
-
25
-
-
10344229911
-
Sexual and temporal dynamics of molecular evolution in C. elegans development
-
Cutter, A. D., and S. Ward, 2005 Sexual and temporal dynamics of molecular evolution in C. elegans development. Mol. Biol. Evol. 22: 178-188.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 178-188
-
-
Cutter, A.D.1
Ward, S.2
-
26
-
-
79952050455
-
Haploinsufficiency and the sex chromosomes from yeasts to humans
-
de Clare, M., P. Pir, and S. G. Oliver, 2011 Haploinsufficiency and the sex chromosomes from yeasts to humans. BMC Biol. 9: 15.
-
(2011)
BMC Biol
, vol.9
, pp. 15
-
-
de Clare, M.1
Pir, P.2
Oliver, S.G.3
-
27
-
-
82255192364
-
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Dro-sophila melanogaster
-
Deng, X. X., J. B. Hiatt, D. K. Nguyen, S. Ercan, D. Sturgill et al., 2011 Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Dro-sophila melanogaster. Nat. Genet. 43: 1179-1185.
-
(2011)
Nat. Genet
, vol.43
, pp. 1179-1185
-
-
Deng, X.X.1
Hiatt, J.B.2
Nguyen, D.K.3
Ercan, S.4
Sturgill, D.5
-
28
-
-
52949136971
-
The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism
-
Dieterich, C., S. W. Clifton, L. N. Schuster, A. Chinwalla, K. Dele-haunty et al., 2008 The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism. Nat. Genet. 40: 1193-1198.
-
(2008)
Nat. Genet
, vol.40
, pp. 1193-1198
-
-
Dieterich, C.1
Clifton, S.W.2
Schuster, L.N.3
Chinwalla, A.4
Dele-Haunty, K.5
-
29
-
-
38449119434
-
-
Worm-Book, ed. The C. elegans Research Community, WormBook, doi/ 10.1895/wormbook.1.7.1
-
Dieterich, C., W. Roeseler, and J. Srinivasan, 2006 Pristionchus pacificus genomics: from genetics to genome sequence. Worm-Book, ed. The C. elegans Research Community, WormBook, doi/ 10.1895/wormbook.1.7.1, http://www.wormbook.org.
-
(2006)
Pristionchus Pacificus Genomics: From Genetics to Genome Sequence
-
-
Dieterich, C.1
Roeseler, W.2
Srinivasan, J.3
-
30
-
-
84870174108
-
Dosage compensation of the sex chromosomes
-
Disteche, C. M., 2012 Dosage compensation of the sex chromosomes. Annu. Rev. Genet. 46(46): 537-560.
-
(2012)
Annu. Rev. Genet
, vol.46
, Issue.46
, pp. 537-560
-
-
Disteche, C.M.1
-
31
-
-
25444465171
-
Global transcriptome analysis of the C57BL/6J mouse testis by SAGE: Evidence for nonrandom gene order
-
Divina, P., C. Vlcek, P. Strnad, V. Paces, and J. Forejt, 2005 Global transcriptome analysis of the C57BL/6J mouse testis by SAGE: evidence for nonrandom gene order. BMC Genomics 6: 29.
-
(2005)
BMC Genomics
, vol.6
, pp. 29
-
-
Divina, P.1
Vlcek, C.2
Strnad, P.3
Paces, V.4
Forejt, J.5
-
32
-
-
84879249750
-
Different flavors of X-chromosome inactivation in mammals
-
Dupont, C., and J. Gribnau, 2013 Different flavors of X-chromosome inactivation in mammals. Curr. Opin. Cell Biol. 25: 314-321.
-
(2013)
Curr. Opin. Cell Biol
, vol.25
, pp. 314-321
-
-
Dupont, C.1
Gribnau, J.2
-
33
-
-
79951813599
-
Sex-chromosome evolution: Recent progress and the influence of male and female heterogamety
-
Ellegren, H., 2011 Sex-chromosome evolution: recent progress and the influence of male and female heterogamety. Nat. Rev. Genet. 12: 157-166.
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 157-166
-
-
Ellegren, H.1
-
34
-
-
34548013932
-
The evolution of sex-biased genes and sex-biased gene expression
-
Ellegren, H., and J. Parsch, 2007 The evolution of sex-biased genes and sex-biased gene expression. Nat. Rev. Genet. 8: 689-698.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 689-698
-
-
Ellegren, H.1
Parsch, J.2
-
35
-
-
63049138375
-
C. elegans dosage compensation: A window into mechanisms of domain-scale gene regulation
-
Ercan, S., and J. D. Lieb, 2009 C. elegans dosage compensation: a window into mechanisms of domain-scale gene regulation. Chromosome Res. 17: 215-227.
-
(2009)
Chromosome Res
, vol.17
, pp. 215-227
-
-
Ercan, S.1
Lieb, J.D.2
-
36
-
-
84893813521
-
Trans-criptional control of a whole chromosome: Emerging models for dosage compensation
-
Ferrari, F., A. A. Alekseyenko, P. J. Park, and M. I. Kuroda, 2014 Trans-criptional control of a whole chromosome: emerging models for dosage compensation. Nat. Struct. Mol. Biol. 21: 118-125.
-
(2014)
Nat. Struct. Mol. Biol
, vol.21
, pp. 118-125
-
-
Ferrari, F.1
Alekseyenko, A.A.2
Park, P.J.3
Kuroda, M.I.4
-
37
-
-
0037150653
-
Regulation of the different chromatin states of autosomes and X chromosomes in the germ line of C. elegans
-
Fong, Y., L. Bender, W. Wang, and S. Strome, 2002 Regulation of the different chromatin states of autosomes and X chromosomes in the germ line of C. elegans. Science 296: 2235-2238.
-
(2002)
Science
, vol.296
, pp. 2235-2238
-
-
Fong, Y.1
Bender, L.2
Wang, W.3
Strome, S.4
-
38
-
-
84898760716
-
A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster
-
Gao, G., M. D. Vibranovski, L. Zhang, Z. Li, M. Liu et al., 2014 A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res. 4: 629-638.
-
(2014)
Genome Res
, vol.4
, pp. 629-638
-
-
Gao, G.1
Vibranovski, M.D.2
Zhang, L.3
Li, Z.4
Liu, M.5
-
39
-
-
84870401386
-
Antagonism between MES-4 and Polycomb repressive complex 2 promotes appropriate gene expression in C. elegans germ cells
-
Gaydos, L. J., A. Rechtsteiner, T. A. Egelhofer, C. R. Carroll, and S. Strome, 2012 Antagonism between MES-4 and Polycomb repressive complex 2 promotes appropriate gene expression in C. elegans germ cells. Cell Rep 2: 1169-1177.
-
(2012)
Cell Rep
, vol.2
, pp. 1169-1177
-
-
Gaydos, L.J.1
Rechtsteiner, A.2
Egelhofer, T.A.3
Carroll, C.R.4
Strome, S.5
-
40
-
-
67649206510
-
Drosophila dosage compensation: A complex voyage to the X chromosome
-
Gelbart, M. E., and M. I. Kuroda, 2009 Drosophila dosage compensation: a complex voyage to the X chromosome. Development 136: 1399-1410.
-
(2009)
Development
, vol.136
, pp. 1399-1410
-
-
Gelbart, M.E.1
Kuroda, M.I.2
-
41
-
-
84861980035
-
Origin and evolution of X chromosome inactivation
-
Gribnau, J., and J. A. Grootegoed, 2012 Origin and evolution of X chromosome inactivation. Curr. Opin. Cell Biol. 24: 397-404.
-
(2012)
Curr. Opin. Cell Biol
, vol.24
, pp. 397-404
-
-
Gribnau, J.1
Grootegoed, J.A.2
-
42
-
-
33847020017
-
Global analysis of X-chromosome dosage compensation
-
Gupta, V., M. Parisi, D. Sturgill, R. Nuttall, M. Doctolero et al., 2006 Global analysis of X-chromosome dosage compensation. J. Biol. 5: 3.
-
(2006)
J. Biol
, vol.5
, pp. 3
-
-
Gupta, V.1
Parisi, M.2
Sturgill, D.3
Nuttall, R.4
Doctolero, M.5
-
43
-
-
34547137683
-
Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny
-
Hillier, L. W., R. D. Miller, S. E. Baird, A. Chinwalla, L. A. Fulton et al., 2007 Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny. PLoS Biol. 5: 1603-1616.
-
(2007)
PLoS Biol
, vol.5
, pp. 1603-1616
-
-
Hillier, L.W.1
Miller, R.D.2
Baird, S.E.3
Chinwalla, A.4
Fulton, L.A.5
-
44
-
-
84871958299
-
A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence
-
Hu, T. T., M. B. Eisen, K. R. Thornton, and P. Andolfatto, 2013 A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Res. 23: 89-98.
-
(2013)
Genome Res
, vol.23
, pp. 89-98
-
-
Hu, T.T.1
Eisen, M.B.2
Thornton, K.R.3
Andolfatto, P.4
-
45
-
-
84863183635
-
Extensive X-linked adaptive evolution in central chimpanzees
-
Hvilsom, C., Y. Qian, T. Bataillon, Y. R. Li, T. Mailund et al., 2012 Extensive X-linked adaptive evolution in central chimpanzees. Proc. Natl. Acad. Sci. USA 109: 2054-2059.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 2054-2059
-
-
Hvilsom, C.1
Qian, Y.2
Bataillon, T.3
Li, Y.R.4
Mailund, T.5
-
46
-
-
77950583715
-
The sexually antagonistic genes of Drosophila melanogaster
-
Innocenti, P., and E. H. Morrow, 2010 The sexually antagonistic genes of Drosophila melanogaster. PLoS Biol. 8: e1000335.
-
(2010)
PLoS Biol
, vol.8
-
-
Innocenti, P.1
Morrow, E.H.2
-
47
-
-
72449139061
-
Evolution of sex-dependent gene expression in three recently diverged species of Drosoph-ila
-
Jiang, Z. F., and C. A. Machado, 2009 Evolution of sex-dependent gene expression in three recently diverged species of Drosoph-ila. Genetics 183: 1175-1185.
-
(2009)
Genetics
, vol.183
, pp. 1175-1185
-
-
Jiang, Z.F.1
Machado, C.A.2
-
48
-
-
84861541065
-
Mechanisms and evolutionary patterns of mammalian and avian dosage compensation
-
Julien, P., D. Brawand, M. Soumillon, A. Necsulea, A. Liechti et al., 2012 Mechanisms and evolutionary patterns of mammalian and avian dosage compensation. PLoS Biol. 10: e1001328.
-
(2012)
PLoS Biol
, vol.10
-
-
Julien, P.1
Brawand, D.2
Soumillon, M.3
Necsulea, A.4
Liechti, A.5
-
49
-
-
0032932449
-
A Caenorhabditis elegans homeobox gene expressed in the male tail, a link between pattern formation and sexual dimorphism? Dev
-
Kagoshima, H., G. Cassata, and T. R. Burglin, 1999 A Caenorhabditis elegans homeobox gene expressed in the male tail, a link between pattern formation and sexual dimorphism? Dev. Genes Evol. 209: 59-62.
-
(1999)
Genes Evol
, vol.209
, pp. 59-62
-
-
Kagoshima, H.1
Cassata, G.2
Burglin, T.R.3
-
50
-
-
84872013472
-
An excess of gene expression divergence on the X chromosome in Drosophila embryos: Implications for the faster-x hypothesis
-
Kayserili, M. A., D. T. Gerrard, P. Tomancak, and A. T. Kalinka, 2012 An excess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-x hypothesis. PLoS Genet. 8: e1003200.
-
(2012)
PLoS Genet
, vol.8
-
-
Kayserili, M.A.1
Gerrard, D.T.2
Tomancak, P.3
Kalinka, A.T.4
-
51
-
-
0036333386
-
X-chromosome silencing in the germline of C. ele-gans
-
Kelly, W. G., C. E. Schaner, A. F. Dernburg, M. H. Lee, S. K. Kim et al., 2002 X-chromosome silencing in the germline of C. ele-gans. Development 129: 479-492.
-
(2002)
Development
, vol.129
, pp. 479-492
-
-
Kelly, W.G.1
Schaner, C.E.2
Dernburg, A.F.3
Lee, M.H.4
Kim, S.K.5
-
52
-
-
22144447840
-
Parallel patterns of evolution in the genomes and transcrip-tomes of humans and chimpanzees
-
Khaitovich, P., I. Hellmann, W. Enard, K. Nowick, M. Leinweber et al., 2005 Parallel patterns of evolution in the genomes and transcrip-tomes of humans and chimpanzees. Science 309: 1850-1854.
-
(2005)
Science
, vol.309
, pp. 1850-1854
-
-
Khaitovich, P.1
Hellmann, I.2
Enard, W.3
Nowick, K.4
Leinweber, M.5
-
53
-
-
2642558614
-
The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation
-
Khil, P. P., N. A. Smirnova, P. J. Romanienko, and R. D. Camerini-Otero, 2004 The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation. Nat. Genet. 36: 642-646.
-
(2004)
Nat. Genet
, vol.36
, pp. 642-646
-
-
Khil, P.P.1
Smirnova, N.A.2
Romanienko, P.J.3
Camerini-Otero, R.D.4
-
54
-
-
0019891530
-
Alterations in cell lineage following laser ablation of cells in the somatic gonad of Caenorhabditis elegans
-
Kimble, J., 1981 Alterations in cell lineage following laser ablation of cells in the somatic gonad of Caenorhabditis elegans. Dev. Biol. 87: 286-300.
-
(1981)
Dev. Biol
, vol.87
, pp. 286-300
-
-
Kimble, J.1
-
55
-
-
0019890956
-
On the control of germ cell development in Caenorhabditis elegans
-
Kimble, J. E., and J. G. White, 1981 On the control of germ cell development in Caenorhabditis elegans. Dev. Biol. 81: 208-219.
-
(1981)
Dev. Biol
, vol.81
, pp. 208-219
-
-
Kimble, J.E.1
White, J.G.2
-
56
-
-
2942669900
-
Caenorhabditis phylogeny predicts convergence of her-maphroditism and extensive intron loss
-
Kiontke, K., N. P. Gavin, Y. Raynes, C. Roehrig, F. Piano et al., 2004 Caenorhabditis phylogeny predicts convergence of her-maphroditism and extensive intron loss. Proc. Natl. Acad. Sci. USA 101: 9003-9008.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 9003-9008
-
-
Kiontke, K.1
Gavin, N.P.2
Raynes, Y.3
Roehrig, C.4
Piano, F.5
-
57
-
-
81355149268
-
A phylogeny and molecular barcodes for Caeno-rhabditis, with numerous new species from rotting fruits
-
Kiontke, K. C., M. A. Felix, M. Ailion, M. V. Rockman, C. Braendle et al., 2011 A phylogeny and molecular barcodes for Caeno-rhabditis, with numerous new species from rotting fruits. BMC Evol. Biol. 11: 339.
-
(2011)
BMC Evol. Biol
, vol.11
, pp. 339
-
-
Kiontke, K.C.1
Felix, M.A.2
Ailion, M.3
Rockman, M.V.4
Braendle, C.5
-
58
-
-
77950650911
-
A toolkit for rapid gene mapping in the nematode Caenorhabditis briggsae
-
Koboldt, D. C., J. Staisch, B. Thillainathan, K. Haines, S. E. Baird et al., 2010 A toolkit for rapid gene mapping in the nematode Caenorhabditis briggsae. BMC Genomics 11: 236.
-
(2010)
BMC Genomics
, vol.11
, pp. 236
-
-
Koboldt, D.C.1
Staisch, J.2
Thillainathan, B.3
Haines, K.4
Baird, S.E.5
-
59
-
-
84901369030
-
Faster-x adaptive protein evolution in house mice
-
Kousathanas, A., D. L. Halligan, and P. D. Keightley, 2013 Faster-x adaptive protein evolution in house mice. Genetics 196: 1131-1143.
-
(2013)
Genetics
, vol.196
, pp. 1131-1143
-
-
Kousathanas, A.1
Halligan, D.L.2
Keightley, P.D.3
-
60
-
-
84879288762
-
Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation
-
Kruesi, W. S., L. J. Core, C. T. Waters, J. T. Lis, and B. J. Meyer, 2013 Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation. Elife 2: e00808.
-
(2013)
Elife
, vol.2
-
-
Kruesi, W.S.1
Core, L.J.2
Waters, C.T.3
Lis, J.T.4
Meyer, B.J.5
-
61
-
-
62349130698
-
Ultra-fast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., C. Trapnell, M. Pop, and S. L. Salzberg, 2009 Ultra-fast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
62
-
-
0038043324
-
Limited microsynteny between the genomes of Pristionchus pacificus and Caenorhabditis elegans
-
Lee, K. Z., A. Eizinger, R. Nandakumar, S. C. Schuster, and R. J. Sommer, 2003 Limited microsynteny between the genomes of Pristionchus pacificus and Caenorhabditis elegans. Nucleic Acids Res. 31: 2553-2560.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2553-2560
-
-
Lee, K.Z.1
Eizinger, A.2
Nandakumar, R.3
Schuster, S.C.4
Sommer, R.J.5
-
63
-
-
0038420050
-
Evidence that the human X chromosome is enriched for male-specific but not female-specific genes
-
Lercher, M. J., A. O. Urrutia, and L. D. Hurst, 2003 Evidence that the human X chromosome is enriched for male-specific but not female-specific genes. Mol. Biol. Evol. 20: 1113-1116.
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 1113-1116
-
-
Lercher, M.J.1
Urrutia, A.O.2
Hurst, L.D.3
-
64
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., B. Handsaker, A. Wysoker, T. Fennell, J. Ruan et al., 2009 The sequence alignment/map format and SAMtools. Bi-oinformatics 25: 2078-2079.
-
(2009)
Bi-oinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
65
-
-
84863955476
-
Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation
-
Lin, F., K. Xing, J. Zhang, and X. He, 2012 Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation. Proc. Natl. Acad. Sci. USA 109: 11752-11757.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 11752-11757
-
-
Lin, F.1
Xing, K.2
Zhang, J.3
He, X.4
-
66
-
-
38749117957
-
Dosage compensation in the mouse balances up-regula-tion and silencing of X-linked genes
-
Lin, H., V. Gupta, M. D. VerMilyea, F. Falciani, J. T. Lee et al., 2007 Dosage compensation in the mouse balances up-regula-tion and silencing of X-linked genes. PLoS Biol. 5: 2809-2820.
-
(2007)
PLoS Biol
, vol.5
, pp. 2809-2820
-
-
Lin, H.1
Gupta, V.2
Vermilyea, M.D.3
Falciani, F.4
Lee, J.T.5
-
67
-
-
84869078471
-
The rapid evolution of X-linked male-biased gene expression and the large-X effect in Drosophila yakuba, D. santomea, and their hybrids
-
Llopart, A., 2012 The rapid evolution of X-linked male-biased gene expression and the large-X effect in Drosophila yakuba, D. santomea, and their hybrids. Mol. Biol. Evol. 29: 3873-3886.
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 3873-3886
-
-
Llopart, A.1
-
68
-
-
15244356879
-
Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee
-
Lu, J., and C. I. Wu, 2005 Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee. Proc. Natl. Acad. Sci. USA 102: 4063-4067.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4063-4067
-
-
Lu, J.1
Wu, C.I.2
-
69
-
-
21044455593
-
Autosomal genes of autosomal/X-linked duplicated gene pairs and germ-line proliferation in Caenorhabditis elegans
-
Maciejowski, J., J. H. Ahn, P. G. Cipriani, D. J. Killian, A. L. Chaudh-ary et al., 2005 Autosomal genes of autosomal/X-linked duplicated gene pairs and germ-line proliferation in Caenorhabditis elegans. Genetics 169: 1997-2011.
-
(2005)
Genetics
, vol.169
, pp. 1997-2011
-
-
Maciejowski, J.1
Ahn, J.H.2
Cipriani, P.G.3
Killian, D.J.4
Chaudh-Ary, A.L.5
-
70
-
-
77957928823
-
Meiotic silencing in Caenorhabditis elegans
-
Maine, E. M., 2010 Meiotic silencing in Caenorhabditis elegans. Int. Rev. Cell Mol. Biol. 282(282): 91-134.
-
(2010)
Int. Rev. Cell Mol. Biol
, vol.282
, Issue.282
, pp. 91-134
-
-
Maine, E.M.1
-
71
-
-
67649130521
-
Are sex-biased genes more dispensable?
-
Mank, J. E., and H. Ellegren, 2009 Are sex-biased genes more dispensable? Biol. Lett. 5: 409-412.
-
(2009)
Biol. Lett
, vol.5
, pp. 409-412
-
-
Mank, J.E.1
Ellegren, H.2
-
72
-
-
42149106152
-
The unique genomic properties of sex-biased genes: Insights from avian microarray data
-
Mank, J. E., L. Hultin-Rosenberg, M. T. Webster, and H. Ellegren, 2008a The unique genomic properties of sex-biased genes: insights from avian microarray data. BMC Genomics 9: 148.
-
(2008)
BMC Genomics
, vol.9
, pp. 148
-
-
Mank, J.E.1
Hultin-Rosenberg, L.2
Webster, M.T.3
Ellegren, H.4
-
73
-
-
38349083274
-
Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression
-
Mank, J. E., L. Hultin-Rosenberg, M. Zwahlen, and H. Ellegren, 2008b Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression. Am. Nat. 171: 35-43.
-
(2008)
Am. Nat
, vol.171
, pp. 35-43
-
-
Mank, J.E.1
Hultin-Rosenberg, L.2
Zwahlen, M.3
Ellegren, H.4
-
74
-
-
84873576857
-
Little evidence for demasculinization of the drosophila x chromosome among genes expressed in the male germline
-
Meiklejohn, C. D., and D. C. Presgraves, 2012 Little evidence for demasculinization of the drosophila x chromosome among genes expressed in the male germline. Genome Biol. Evol. 4: 1007-1016.
-
(2012)
Genome Biol. Evol
, vol.4
, pp. 1007-1016
-
-
Meiklejohn, C.D.1
Presgraves, D.C.2
-
75
-
-
0042692890
-
Rapid evolution of male-biased gene expression in Dro-sophila
-
Meiklejohn, C. D., J. Parsch, J. M. Ranz, and D. L. Hartl, 2003 Rapid evolution of male-biased gene expression in Dro-sophila. Proc. Natl. Acad. Sci. USA 100: 9894-9899.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9894-9899
-
-
Meiklejohn, C.D.1
Parsch, J.2
Ranz, J.M.3
Hartl, D.L.4
-
76
-
-
84863550891
-
Disentangling the relationship between sex-biased gene expression and X-link-age
-
Meisel, R. P., J. H. Malone, and A. G. Clark, 2012a Disentangling the relationship between sex-biased gene expression and X-link-age. Genome Res. 22: 1255-1265.
-
(2012)
Genome Res
, vol.22
, pp. 1255-1265
-
-
Meisel, R.P.1
Malone, J.H.2
Clark, A.G.3
-
77
-
-
84868101450
-
Faster-X evolution of gene expression in Drosophila
-
Meisel, R. P., J. H. Malone, and A. G. Clark, 2012b Faster-X evolution of gene expression in Drosophila. PLoS Genet. 8: e1003013.
-
(2012)
PLoS Genet
, vol.8
-
-
Meisel, R.P.1
Malone, J.H.2
Clark, A.G.3
-
78
-
-
77952240927
-
Targeting X chromosomes for repression
-
Meyer, B. J., 2010 Targeting X chromosomes for repression. Curr. Opin. Genet. Dev. 20: 179-189.
-
(2010)
Curr. Opin. Genet. Dev
, vol.20
, pp. 179-189
-
-
Meyer, B.J.1
-
79
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Mikkelsen, T. S., L. W. Hillier, E. E. Eichler, M. C. Zody, D. B. Jaffe et al., 2005 Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
Mikkelsen, T.S.1
Hillier, L.W.2
Eichler, E.E.3
Zody, M.C.4
Jaffe, D.B.5
-
80
-
-
24644458584
-
Comparative genomics of nematodes
-
Mitreva, M., M. L. Blaxter, D. M. Bird, and J. P. McCarter, 2005 Comparative genomics of nematodes. Trends Genet. 21: 573-581.
-
(2005)
Trends Genet
, vol.21
, pp. 573-581
-
-
Mitreva, M.1
Blaxter, M.L.2
Bird, D.M.3
McCarter, J.P.4
-
81
-
-
29444455049
-
Dosage compensation of the active X chromosome in mammals
-
Nguyen, D. K., and C. M. Disteche, 2006 Dosage compensation of the active X chromosome in mammals. Nat. Genet. 38: 47-53.
-
(2006)
Nat. Genet
, vol.38
, pp. 47-53
-
-
Nguyen, D.K.1
Disteche, C.M.2
-
83
-
-
0024595101
-
Detection of polymorphisms of human DNA by gel elec-trophoresis as single-strand conformation polymorphisms
-
Orita, M., H. Iwahana, H. Kanazawa, K. Hayashi, and T. Sekiya, 1989 Detection of polymorphisms of human DNA by gel elec-trophoresis as single-strand conformation polymorphisms. Proc. Natl. Acad. Sci. USA 86: 2766-2770.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 2766-2770
-
-
Orita, M.1
Iwahana, H.2
Kanazawa, H.3
Hayashi, K.4
Sekiya, T.5
-
84
-
-
0031435866
-
Haldane's rule
-
Orr, H. A., 1997 Haldane's rule. Annu. Rev. Ecol. Syst. 28: 195-218.
-
(1997)
Annu. Rev. Ecol. Syst
, vol.28
, pp. 195-218
-
-
Orr, H.A.1
-
85
-
-
4844222675
-
A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
-
Parisi, M., R. Nuttall, P. Edwards, J. Minor, D. Naiman et al., 2004 A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults. Genome Biol. 5: R40.
-
(2004)
Genome Biol
, vol.5
-
-
Parisi, M.1
Nuttall, R.2
Edwards, P.3
Minor, J.4
Naiman, D.5
-
86
-
-
0346460960
-
Paucity of genes on the Drosophila X chromosome showing male-biased expression
-
Parisi, M., R. Nuttall, D. Naiman, G. Bouffard, J. Malley et al., 2003 Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 299: 697-700.
-
(2003)
Science
, vol.299
, pp. 697-700
-
-
Parisi, M.1
Nuttall, R.2
Naiman, D.3
Bouffard, G.4
Malley, J.5
-
87
-
-
70350653808
-
Transcriptome analysis by strand-specific sequencing of complementary DNA
-
Parkhomchuk, D., T. Borodina, V. Amstislavskiy, M. Banaru, L. Hallen et al., 2009 Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res. 37: e123.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Parkhomchuk, D.1
Borodina, T.2
Amstislavskiy, V.3
Banaru, M.4
Hallen, L.5
-
88
-
-
84872546066
-
The evolutionary causes and consequences of sex-biased gene expression
-
Parsch, J., and H. Ellegren, 2013 The evolutionary causes and consequences of sex-biased gene expression. Nat. Rev. Genet. 14: 83-87.
-
(2013)
Nat. Rev. Genet
, vol.14
, pp. 83-87
-
-
Parsch, J.1
Ellegren, H.2
-
89
-
-
0034649570
-
RNAi analysis of genes expressed in the ovary of Caeno-rhabditis elegans
-
Piano, F., A. J. Schetter, M. Mangone, L. Stein, and K. J. Kemphues, 2000 RNAi analysis of genes expressed in the ovary of Caeno-rhabditis elegans. Curr. Biol. 10: 1619-1622.
-
(2000)
Curr. Biol
, vol.10
, pp. 1619-1622
-
-
Piano, F.1
Schetter, A.J.2
Mangone, M.3
Stein, L.4
Kemphues, K.J.5
-
90
-
-
84871934514
-
Recent advances in X-chromosome inactivation research
-
Pollex, T., and E. Heard, 2012 Recent advances in X-chromosome inactivation research. Curr. Opin. Cell Biol. 24: 825-832.
-
(2012)
Curr. Opin. Cell Biol
, vol.24
, pp. 825-832
-
-
Pollex, T.1
Heard, E.2
-
91
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A. R., and I. M. Hall, 2010 BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
92
-
-
84907095419
-
R: A Language and Environment for Statistical Computing
-
R Development Core Team, Vienna, Austria
-
R Development Core Team, 2012 R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2012)
R Foundation For Statistical Computing
-
-
-
93
-
-
0037504137
-
Sex-dependent gene expression and evolution of the Drosophila transcriptome
-
Ranz, J. M., C. I. Castillo-Davis, C. D. Meiklejohn, and D. L. Hartl, 2003 Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 300: 1742-1745.
-
(2003)
Science
, vol.300
, pp. 1742-1745
-
-
Ranz, J.M.1
Castillo-Davis, C.I.2
Meiklejohn, C.D.3
Hartl, D.L.4
-
94
-
-
46249118379
-
An evolutionarily conserved sexual signature in the primate brain
-
Reinius, B., P. Saetre, J. A. Leonard, R. Blekhman, R. Merino-Martinez et al., 2008 An evolutionarily conserved sexual signature in the primate brain. PLoS Genet. 4: e1000100.
-
(2008)
PLoS Genet
, vol.4
-
-
Reinius, B.1
Saetre, P.2
Leonard, J.A.3
Blekhman, R.4
Merino-Martinez, R.5
-
95
-
-
84868515935
-
Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome
-
Reinius, B., M. M. Johansson, K. J. Radomska, E. H. Morrow, G. K. Pandey et al., 2012 Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome. BMC Genomics 13: 607.
-
(2012)
BMC Genomics
, vol.13
, pp. 607
-
-
Reinius, B.1
Johansson, M.M.2
Radomska, K.J.3
Morrow, E.H.4
Pandey, G.K.5
-
96
-
-
0033639116
-
A global profile of germline gene expression in C. ele-gans
-
Reinke, V., H. E. Smith, J. Nance, J. Wang, C. Van Doren et al., 2000 A global profile of germline gene expression in C. ele-gans. Mol. Cell 6: 605-616.
-
(2000)
Mol. Cell
, vol.6
, pp. 605-616
-
-
Reinke, V.1
Smith, H.E.2
Nance, J.3
Wang, J.4
van Doren, C.5
-
97
-
-
0842344618
-
Genome-wide germline-enriched and sex-biased expression profiles in Caeno-rhabditis elegans
-
Reinke, V., I. S. Gil, S. Ward, and K. Kazmer, 2004 Genome-wide germline-enriched and sex-biased expression profiles in Caeno-rhabditis elegans. Development 131: 311-323.
-
(2004)
Development
, vol.131
, pp. 311-323
-
-
Reinke, V.1
Gil, I.S.2
Ward, S.3
Kazmer, K.4
-
98
-
-
0036570006
-
Germline X chromosomes exhibit contrasting patterns of histone H3 methylation in Caenorhabdi-tis elegans
-
Reuben, M., and R. Lin, 2002 Germline X chromosomes exhibit contrasting patterns of histone H3 methylation in Caenorhabdi-tis elegans. Dev. Biol. 245: 71-82.
-
(2002)
Dev. Biol
, vol.245
, pp. 71-82
-
-
Reuben, M.1
Lin, R.2
-
99
-
-
0021554565
-
Sex-chromosomes and the evolution of sexual dimorphism
-
Rice, W. R., 1984 Sex-chromosomes and the evolution of sexual dimorphism. Evolution 38: 735-742.
-
(1984)
Evolution
, vol.38
, pp. 735-742
-
-
Rice, W.R.1
-
100
-
-
0034771855
-
Intersexual ontogenetic conflict
-
Rice, W. R., and A. K. Chippindale, 2001 Intersexual ontogenetic conflict. J. Evol. Biol. 14: 685-693.
-
(2001)
J. Evol. Biol
, vol.14
, pp. 685-693
-
-
Rice, W.R.1
Chippindale, A.K.2
-
101
-
-
19944434180
-
Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
-
Richards, S., Y. Liu, B. R. Bettencourt, P. Hradecky, S. Letovsky et al., 2005 Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res. 15: 1-18.
-
(2005)
Genome Res
, vol.15
, pp. 1-18
-
-
Richards, S.1
Liu, Y.2
Bettencourt, B.R.3
Hradecky, P.4
Letovsky, S.5
-
102
-
-
79960935333
-
Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination
-
Ross, J. A., D. C. Koboldt, J. E. Staisch, H. M. Chamberlin, B. P. Gupta et al., 2011 Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination. PLoS Genet. 7: e1002174.
-
(2011)
PLoS Genet
, vol.7
-
-
Ross, J.A.1
Koboldt, D.C.2
Staisch, J.E.3
Chamberlin, H.M.4
Gupta, B.P.5
-
103
-
-
9644264339
-
Gonadogenesis in Pristionchus pacificus and organ evolution: Development, adult morphology and cell-cell interactions in the hermaphrodite go-nad
-
Rudel, D., M. Riebesell, and R. J. Sommer, 2005 Gonadogenesis in Pristionchus pacificus and organ evolution: development, adult morphology and cell-cell interactions in the hermaphrodite go-nad. Dev. Biol. 277: 200-221.
-
(2005)
Dev. Biol
, vol.277
, pp. 200-221
-
-
Rudel, D.1
Riebesell, M.2
Sommer, R.J.3
-
104
-
-
0028910659
-
Molecular phylogeny and divergence times of Drosophilid species
-
Russo, C. A., N. Takezaki, and M. Nei, 1995 Molecular phylogeny and divergence times of Drosophilid species. Mol. Biol. Evol. 12: 391-404.
-
(1995)
Mol. Biol. Evol
, vol.12
, pp. 391-404
-
-
Russo, C.A.1
Takezaki, N.2
Nei, M.3
-
105
-
-
0033593570
-
An apparent excess of sex-and reproduction-related genes on the human X chromosome
-
Saifi, G. M., and H. S. Chandra, 1999 An apparent excess of sex-and reproduction-related genes on the human X chromosome. Proc. Biol. Sci. 266: 203-209.
-
(1999)
Proc. Biol. Sci
, vol.266
, pp. 203-209
-
-
Saifi, G.M.1
Chandra, H.S.2
-
106
-
-
84883217268
-
Inheritance of gene expression level and selective con straints on trans- and cis-regulatory changes in yeast
-
Schaefke, B., J. J. Emerson, T. Y. Wang, M. Y. Lu, L. C. Hsieh et al., 2013 Inheritance of gene expression level and selective con straints on trans- and cis-regulatory changes in yeast. Mol. Biol. Evol. 30: 2121-2133.
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 2121-2133
-
-
Schaefke, B.1
Emerson, J.J.2
Wang, T.Y.3
Lu, M.Y.4
Hsieh, L.C.5
-
107
-
-
73449100132
-
A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: Evidence for masculinization of the transcriptome
-
Small, C. M., G. E. Carney, Q. Mo, M. Vannucci, and A. G. Jones, 2009 A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: evidence for masculinization of the transcriptome. BMC Genomics 10: 579.
-
(2009)
BMC Genomics
, vol.10
, pp. 579
-
-
Small, C.M.1
Carney, G.E.2
Mo, Q.3
Vannucci, M.4
Jones, A.G.5
-
108
-
-
79551613376
-
A spatial and temporal map of C. elegans gene expression
-
Spencer, W. C., G. Zeller, J. D. Watson, S. R. Henz, K. L. Watkins et al., 2011 A spatial and temporal map of C. elegans gene expression. Genome Res. 21: 325-341.
-
(2011)
Genome Res
, vol.21
, pp. 325-341
-
-
Spencer, W.C.1
Zeller, G.2
Watson, J.D.3
Henz, S.R.4
Watkins, K.L.5
-
109
-
-
0036743434
-
A bacterial artificial chromosome-based genetic linkage map of the nematode Pristionchus pacificus
-
Srinivasan, J., W. Sinz, C. Lanz, A. Brand, R. Nandakumar et al., 2002 A bacterial artificial chromosome-based genetic linkage map of the nematode Pristionchus pacificus. Genetics 162: 129-134.
-
(2002)
Genetics
, vol.162
, pp. 129-134
-
-
Srinivasan, J.1
Sinz, W.2
Lanz, C.3
Brand, A.4
Nandakumar, R.5
-
110
-
-
4243088097
-
The genome sequence of Caenorhabditis briggsae: A plat form for comparative genomics
-
Stein, L. D., Z. R. Bao, D. Blasiar, T. Blumenthal, M. R. Brent et al., 2003 The genome sequence of Caenorhabditis briggsae: A plat form for comparative genomics. PLoS Biol. 1: 166.
-
(2003)
PLoS Biol
, vol.1
, pp. 166
-
-
Stein, L.D.1
Bao, Z.R.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
-
111
-
-
36049039511
-
Demasculinization of X chromosomes in the Drosophila genus
-
Sturgill, D., Y. Zhang, M. Parisi, and B. Oliver, 2007 Demasculinization of X chromosomes in the Drosophila genus. Nature 450: 238-241.
-
(2007)
Nature
, vol.450
, pp. 238-241
-
-
Sturgill, D.1
Zhang, Y.2
Parisi, M.3
Oliver, B.4
-
112
-
-
79957999603
-
Chromosome-biased binding and gene regulation by the Caenorhabditis elegans DRM complex
-
Tabuchi, T. M., B. Deplancke, N. Osato, L. J. Zhu, M. I. Barrasa et al., 2011 Chromosome-biased binding and gene regulation by the Caenorhabditis elegans DRM complex. PLoS Genet. 7: e1002074.
-
(2011)
PLoS Genet
, vol.7
-
-
Tabuchi, T.M.1
Deplancke, B.2
Osato, N.3
Zhu, L.J.4
Barrasa, M.I.5
-
113
-
-
84869507315
-
Simplification and desexualization of gene expression in self-fertile nematodes
-
Thomas, C. G., R. H. Li, H. E. Smith, G. C. Woodruff, B. Oliver et al., 2012 Simplification and desexualization of gene expression in self-fertile nematodes. Curr. Biol. 22: 2167-2172.
-
(2012)
Curr. Biol
, vol.22
, pp. 2167-2172
-
-
Thomas, C.G.1
Li, R.H.2
Smith, H.E.3
Woodruff, G.C.4
Oliver, B.5
-
114
-
-
0036272537
-
Rapid divergence of gene duplicates on the Drosophila melanogaster X chromosome
-
Thornton, K., and M. Long, 2002 Rapid divergence of gene duplicates on the Drosophila melanogaster X chromosome. Mol. Biol. Evol. 19: 918-925.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 918-925
-
-
Thornton, K.1
Long, M.2
-
115
-
-
0036856302
-
Mammalian sperm proteins are rapidly evolving: Evidence of positive selection in functionally diverse genes
-
Torgerson, D. G., R. J. Kulathinal, and R. S. Singh, 2002 Mammalian sperm proteins are rapidly evolving: evidence of positive selection in functionally diverse genes. Mol. Biol. Evol. 19: 1973-1980.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 1973-1980
-
-
Torgerson, D.G.1
Kulathinal, R.J.2
Singh, R.S.3
-
116
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C., A. Roberts, L. Goff, G. Pertea, D. Kim et al., 2012 Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7: 562-578.
-
(2012)
Nat. Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
-
117
-
-
0032582784
-
Evolutionary genetics: The causes of Haldane's rule
-
Turelli, M., 1998 Evolutionary genetics: the causes of Haldane's rule. Science 282: 889-891.
-
(1998)
Science
, vol.282
, pp. 889-891
-
-
Turelli, M.1
-
118
-
-
34250626425
-
Meiotic sex chromosome inactivation
-
Turner, J. M., 2007 Meiotic sex chromosome inactivation. Development 134: 1823-1831.
-
(2007)
Development
, vol.134
, pp. 1823-1831
-
-
Turner, J.M.1
-
119
-
-
84864579125
-
RNA-seq analysis of the C. briggsae transcriptome
-
Uyar, B., J. S. Chu, I. A. Vergara, S. Y. Chua, M. R. Jones et al., 2012 RNA-seq analysis of the C. briggsae transcriptome. Genome Res. 22: 1567-1580.
-
(2012)
Genome Res
, vol.22
, pp. 1567-1580
-
-
Uyar, B.1
Chu, J.S.2
Vergara, I.A.3
Chua, S.Y.4
Jones, M.R.5
-
120
-
-
84901742083
-
Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene func tion
-
Verster, A. J., A. K. Ramani, S. J. McKay, and A. G. Fraser, 2014 Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene func tion. PLoS Genet. 10: e1004077.
-
(2014)
PLoS Genet
, vol.10
-
-
Verster, A.J.1
Ramani, A.K.2
McKay, S.J.3
Fraser, A.G.4
-
121
-
-
73649118486
-
Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes
-
Vibranovski, M. D., H. F. Lopes, T. L. Karr, and M. Long, 2009a Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. PLoS Genet. 5: e1000731.
-
(2009)
PLoS Genet
, vol.5
-
-
Vibranovski, M.D.1
Lopes, H.F.2
Karr, T.L.3
Long, M.4
-
122
-
-
66049085185
-
General gene movement off the X chromosome in the Drosophila genus
-
Vibranovski, M. D., Y. Zhang, and M. Long, 2009b General gene movement off the X chromosome in the Drosophila genus. Genome Res. 19: 897-903.
-
(2009)
Genome Res
, vol.19
, pp. 897-903
-
-
Vibranovski, M.D.1
Zhang, Y.2
Long, M.3
-
123
-
-
79960106363
-
Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biol
-
Vicoso, B., and D. Bachtrog, 2011 Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biol. Evol. 3: 230-235.
-
(2011)
Evol
, vol.3
, pp. 230-235
-
-
Vicoso, B.1
Bachtrog, D.2
-
124
-
-
67349224046
-
The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation
-
Vicoso, B., and B. Charlesworth, 2009 The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation? J. Mol. Evol. 68: 576-583.
-
(2009)
J. Mol. Evol
, vol.68
, pp. 576-583
-
-
Vicoso, B.1
Charlesworth, B.2
-
125
-
-
84883197915
-
Comparative sex chromosome genomics in snakes: Differentiation, evolutionary strata, and lack of global dosage compensation
-
Vicoso, B., J. J. Emerson, Y. Zektser, S. Mahajan, and D. Bachtrog, 2013 Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation. PLoS Biol. 11: e1001643.
-
(2013)
PLoS Biol
, vol.11
-
-
Vicoso, B.1
Emerson, J.J.2
Zektser, Y.3
Mahajan, S.4
Bachtrog, D.5
-
126
-
-
0003861258
-
Gametogenesis
-
edited by G. B. Chitwood, and M. B. Chit-wood. Babylon Press, New York
-
Walton, A. C., 1940 Gametogenesis, pp. 205-215 in An Introduction to Nematology, edited by G. B. Chitwood, and M. B. Chit-wood. Babylon Press, New York.
-
(1940)
An Introduction to Nematology
, pp. 205-215
-
-
Walton, A.C.1
-
127
-
-
77954786788
-
Chromosome size differences may affect meiosis and genome size
-
Wang, J., P. J. Chen, G. J. Wang, and L. Keller, 2010 Chromosome size differences may affect meiosis and genome size. Science 329: 293.
-
(2010)
Science
, vol.329
, pp. 293
-
-
Wang, J.1
Chen, P.J.2
Wang, G.J.3
Keller, L.4
-
128
-
-
0035071815
-
An abundance of X-linked genes expressed in spermatogonia
-
Wang, P. J., J. R. McCarrey, F. Yang, and D. C. Page, 2001 An abundance of X-linked genes expressed in spermatogonia. Nat. Genet. 27: 422-426.
-
(2001)
Nat. Genet
, vol.27
, pp. 422-426
-
-
Wang, P.J.1
McCarrey, J.R.2
Yang, F.3
Page, D.C.4
-
129
-
-
66349103355
-
Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE
-
Wang, X., Y. Zhao, K. Wong, P. Ehlers, Y. Kohara et al., 2009 Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE. BMC Genomics 10: 213.
-
(2009)
BMC Genomics
, vol.10
, pp. 213
-
-
Wang, X.1
Zhao, Y.2
Wong, K.3
Ehlers, P.4
Kohara, Y.5
-
130
-
-
3042722019
-
Evolutionary changes in cis and trans gene regulation
-
Wittkopp, P. J., B. K. Haerum, and A. G. Clark, 2004 Evolutionary changes in cis and trans gene regulation. Nature 430: 85-88.
-
(2004)
Nature
, vol.430
, pp. 85-88
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
-
131
-
-
0001688073
-
Evolution of postmating reproductive isolation: The composite nature of Haldane's rule and its genetic bases
-
Wu, C. I., and A. W. Davis, 1993 Evolution of postmating reproductive isolation: the composite nature of Haldane's rule and its genetic bases. Am. Nat. 142: 187-212.
-
(1993)
Am. Nat
, vol.142
, pp. 187-212
-
-
Wu, C.I.1
Davis, A.W.2
-
132
-
-
33746681910
-
Tissue-specific expression and regulation of sexually di morphic genes in mice
-
Yang, X., E. E. Schadt, S. Wang, H. Wang, A. P. Arnold et al., 2006 Tissue-specific expression and regulation of sexually di morphic genes in mice. Genome Res. 16: 995-1004.
-
(2006)
Genome Res
, vol.16
, pp. 995-1004
-
-
Yang, X.1
Schadt, E.E.2
Wang, S.3
Wang, H.4
Arnold, A.P.5
-
133
-
-
36049041622
-
Constraint and turnover in sex-biased gene expression in the genus Drosophila
-
Zhang, Y., D. Sturgill, M. Parisi, S. Kumar, and B. Oliver, 2007 Constraint and turnover in sex-biased gene expression in the genus Drosophila. Nature 450: 233-237.
-
(2007)
Nature
, vol.450
, pp. 233-237
-
-
Zhang, Y.1
Sturgill, D.2
Parisi, M.3
Kumar, S.4
Oliver, B.5
-
134
-
-
78649283800
-
Age-dependent chromosomal distribution of male-biased genes in Drosophila
-
Zhang, Y. E., M. D. Vibranovski, B. H. Krinsky, and M. Long, 2010 Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Res. 20: 1526-1533.
-
(2010)
Genome Res
, vol.20
, pp. 1526-1533
-
-
Zhang, Y.E.1
Vibranovski, M.D.2
Krinsky, B.H.3
Long, M.4
|