-
1
-
-
33845212090
-
Low micronutrient intake may accelerate the degenerative diseases of aging, allocation of scarce micronutrients by triage
-
Ames BN. 2006. Low micronutrient intake may accelerate the degenerative diseases of aging, allocation of scarce micronutrients by triage. Proc. Natl. Acad. Sci. U. S. A. 103: 17589-17594. http://dx.doi.org/10.1073/pnas .0608757103.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 17589-17594
-
-
Ames, B.N.1
-
2
-
-
35848967003
-
Global analysis of nitrogen and phosphorus limitation of primary producers in freshwater, marine and terrestrial ecosystems
-
Elser JJ, Bracken MES, Cleland EE, Gruner DS, Harpole WS, Hillebrand H, Ngai JT, Seabloom EW, Shurin JB, Smith JE. 2007. Global analysis of nitrogen and phosphorus limitation of primary producers in freshwater, marine and terrestrial ecosystems. Ecol. Lett. 10: 1135-1142. http://dx.doi.org/10.1111/j.1461-0248.2007.01113.x.
-
(2007)
Ecol. Lett.
, vol.10
, pp. 1135-1142
-
-
Elser, J.J.1
Bracken, M.E.S.2
Cleland, E.E.3
Gruner, D.S.4
Harpole, W.S.5
Hillebrand, H.6
Ngai, J.T.7
Seabloom, E.W.8
Shurin, J.B.9
Smith, J.E.10
-
3
-
-
82755162477
-
The impact of phos-phate scarcity on pharmaceutical protein production in S cerevisiae: linking transcriptomic insights to phenotypic responses
-
Kazemi Seresht A, Palmqvist EA, Olsson L. 2011. The impact of phos-phate scarcity on pharmaceutical protein production in S. cerevisiae: linking transcriptomic insights to phenotypic responses. Microb. Cell Fact. 10: 104. http://dx.doi.org/10.1186/1475-2859-10-104.
-
(2011)
Microb. Cell Fact.
, vol.10
, pp. 104
-
-
Kazemi Seresht, A.1
Palmqvist, E.A.2
Olsson, L.3
-
4
-
-
78650306221
-
Stoichiogenomics: the evolutionary ecology of macromolecular elemental composition
-
Elser JJ, Acquisti C, Kumar S. 2011. Stoichiogenomics: the evolutionary ecology of macromolecular elemental composition. Trends Ecol. Evol. 26: 38-44. http://dx.doi.org/10.1016/j.tree.2010.10.006.
-
(2011)
Trends Ecol. Evol.
, vol.26
, pp. 38-44
-
-
Elser, J.J.1
Acquisti, C.2
Kumar, S.3
-
5
-
-
85194761501
-
Ecological stoichiometry: the biology of elements from molecules to the biosphere
-
Princeton University Press, Princeton, NJ
-
Sterner RW, Elser JJ. 2002. Ecological stoichiometry: the biology of elements from molecules to the biosphere. Princeton University Press, Princeton, NJ.
-
(2002)
-
-
Sterner, R.W.1
Elser, J.J.2
-
6
-
-
0037296240
-
Are bacteria more like plants or animals? Growth rate and resource dependence of bacterial C: N: P stoichiometry
-
Makino W, Cotner JB, Sterner RW, Elser JJ. 2003. Are bacteria more like plants or animals? Growth rate and resource dependence of bacterial C: N: P stoichiometry. Funct. Ecol. 17: 121-130. http://dx.doi.org/10.1046/j.1365-2435.2003.00712.x.
-
(2003)
Funct. Ecol.
, vol.17
, pp. 121-130
-
-
Makino, W.1
Cotner, J.B.2
Sterner, R.W.3
Elser, J.J.4
-
7
-
-
4544388687
-
Dual nutrient limited growth: models, experimental observations, and applications
-
Zinn M, Witholt B, Egli T. 2004. Dual nutrient limited growth: models, experimental observations, and applications. J. Biotechnol. 113: 263-279. http://dx.doi.org/10.1016/j.jbiotec.2004.03.030.
-
(2004)
J. Biotechnol.
, vol.113
, pp. 263-279
-
-
Zinn, M.1
Witholt, B.2
Egli, T.3
-
8
-
-
0035854519
-
Molecular evolution of protein atomic composition
-
Baudouin-Cornu P, Surdin-Kerjan Y, Marlière P, Thomas D. 2001. Molecular evolution of protein atomic composition. Science 293: 297-300. http://dx.doi.org/10.1126/science.1061052.
-
(2001)
Science
, vol.293
, pp. 297-300
-
-
Baudouin-Cornu, P.1
Surdin-Kerjan, Y.2
Marlière, P.3
Thomas, D.4
-
9
-
-
58149354386
-
Protein material costs: single atoms can make an evolutionary difference
-
Bragg JG, Wagner A. 2009. Protein material costs: single atoms can make an evolutionary difference. Trends Genet. 25: 5-8. http://dx.doi.org/10 .1016/j.tig.2008.10.007.
-
(2009)
Trends Genet.
, vol.25
, pp. 5-8
-
-
Bragg, J.G.1
Wagner, A.2
-
10
-
-
0020553669
-
Lactobacillus plantarum, an organism not requiring iron
-
Archibald F. 1983. Lactobacillus plantarum, an organism not requiring iron. FEMS Microbiol. Lett. 19: 29-32. http://dx.doi.org/10.1111/j.1574-6968.1983.tb00504.x.
-
(1983)
FEMS Microbiol. Lett.
, vol.19
, pp. 29-32
-
-
Archibald, F.1
-
11
-
-
0034595617
-
Lack of a role for iron in the Lyme disease pathogen
-
Posey JE, Gheridini FC. 2000. Lack of a role for iron in the Lyme disease pathogen. Science 288: 1651-1653. http://dx.doi.org/10.1126/science.288 .5471.1651.
-
(2000)
Science
, vol.288
, pp. 1651-1653
-
-
Posey, J.E.1
Gheridini, F.C.2
-
12
-
-
0033811814
-
Salicylic acid is not a bacterial siderophore: a theoretical study
-
Chipperfield JR, Ratledge C. 2000. Salicylic acid is not a bacterial siderophore: a theoretical study. BioMetals 13: 165-168. http://dx.doi.org/10 .1023/A: 1009227206890.
-
(2000)
BioMetals
, vol.13
, pp. 165-168
-
-
Chipperfield, J.R.1
Ratledge, C.2
-
13
-
-
0036888008
-
Chemical aspects of siderophore mediated iron transport
-
Boukhalfa H, Crumbliss AL. 2002. Chemical aspects of siderophore mediated iron transport. BioMetals 15: 325-339. http://dx.doi.org/10 .1023/A: 1020218608266.
-
(2002)
BioMetals
, vol.15
, pp. 325-339
-
-
Boukhalfa, H.1
Crumbliss, A.L.2
-
14
-
-
0019447069
-
Regulation of ferric iron transport in Escherichia coli K12: isolation of a constitutive mutant
-
Hantke K. 1981. Regulation of ferric iron transport in Escherichia coli K12: isolation of a constitutive mutant. Mol. Gen. Genet. 182: 288-292. http://dx.doi.org/10.1007/BF00269672.
-
(1981)
Mol. Gen. Genet.
, vol.182
, pp. 288-292
-
-
Hantke, K.1
-
15
-
-
0016614384
-
Nutritional immunity-host's attempt to withhold iron from microbial invaders
-
Weinberg ED. 1975. Nutritional immunity-host's attempt to withhold iron from microbial invaders. JAMA 231: 39-41. http://dx.doi.org/10 .1001/jama.1975.03240130021018.
-
(1975)
JAMA
, vol.231
, pp. 39-41
-
-
Weinberg, E.D.1
-
16
-
-
77949885386
-
Nutritional immunity beyond iron: a role for manganese and zinc
-
Kehl-Fie TE, Skaar EP. 2010. Nutritional immunity beyond iron: a role for manganese and zinc. Curr. Opin. Chem. Biol. 14: 218-224. http://dx .doi.org/10.1016/j.cbpa.2009.11.008.
-
(2010)
Curr. Opin. Chem. Biol.
, vol.14
, pp. 218-224
-
-
Kehl-Fie, T.E.1
Skaar, E.P.2
-
18
-
-
77958143617
-
The battle for iron between bacterial pathogens and their vertebrate hosts
-
Skaar EP. 2010. The battle for iron between bacterial pathogens and their vertebrate hosts. PLoS Pathog. 6: e1000949. http://dx.doi.org/10.1371/journal.ppat.1000949.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Skaar, E.P.1
-
20
-
-
0033025239
-
Ferritin mutants of Escherichia coli are iron deficient and growth impaired, and fur mutants are iron deficient
-
Abdul-Tehrani Hudson AJ, Yung-Sheng C, Timms AR, Hawkins C, Williams JM, Harrison PM, Guest JR, Andrews SC. 1999. Ferritin mutants of Escherichia coli are iron deficient and growth impaired, and fur mutants are iron deficient. J. Bacteriol. 181: 1415-1428.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1415-1428
-
-
Abdul-Tehrani Hudson, A.J.1
Yung-Sheng, C.2
Timms, A.R.3
Hawkins, C.4
Williams, J.M.5
Harrison, P.M.6
Guest, J.R.7
Andrews, S.C.8
-
21
-
-
1642506316
-
Adaptation of the photosynthetic electron transport chain in cyanobacteria to iron deficiency: the function of IdiA and IsiA
-
Michel KP, Pistorius EK. 2004. Adaptation of the photosynthetic electron transport chain in cyanobacteria to iron deficiency: the function of IdiA and IsiA. Physiol. Plant. 120: 36-50. http://dx.doi.org/10.1111/j.0031-9317.2004.0229.x.
-
(2004)
Physiol. Plant.
, vol.120
, pp. 36-50
-
-
Michel, K.P.1
Pistorius, E.K.2
-
24
-
-
0033056654
-
Effect of loop deletions on the binding and transport of ferric enterobactin by FepA
-
Newton SMC, Igo JD, Scott DC, Klebba PE. 1999. Effect of loop deletions on the binding and transport of ferric enterobactin by FepA. Mol. Microbiol. 32: 1153-1165. http://dx.doi.org/10.1046/j.1365-2958 .1999.01424.x.
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 1153-1165
-
-
Newton, S.M.C.1
Igo, J.D.2
Scott, D.C.3
Klebba, P.E.4
-
25
-
-
0037010152
-
Iron transport and signaling in Escherichia coli
-
Braun V, Braun M. 2002. Iron transport and signaling in Escherichia coli. FEBS Lett. 529: 78-85. http://dx.doi.org/10.1016/S0014-5793(02)03185-X.
-
(2002)
FEBS Lett.
, vol.529
, pp. 78-85
-
-
Braun, V.1
Braun, M.2
-
26
-
-
0037389797
-
Enterobactin: an archetype for microbial iron transport
-
Raymond KN, Dertz EA, Kim SS. 2003. Enterobactin: an archetype for microbial iron transport. Proc. Natl. Acad. Sci. U. S. A. 100: 3584-3588. http://dx.doi.org/10.1073/pnas.0630018100.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 3584-3588
-
-
Raymond, K.N.1
Dertz, E.A.2
Kim, S.S.3
-
27
-
-
77956653865
-
Iron starvation and siderophore-mediated iron transport
-
Smith AW. 1998. Iron starvation and siderophore-mediated iron transport. Methods Microbiol. 27: 331-342. http://dx.doi.org/10.1016/S0580-9517(08)70294-0.
-
(1998)
Methods Microbiol.
, vol.27
, pp. 331-342
-
-
Smith, A.W.1
-
28
-
-
0032719562
-
Ferredoxin and flavodoxin as biochemical indicators of iron limitation during open-ocean iron enrichment
-
Erdner DL, Anderson DM. 1999. Ferredoxin and flavodoxin as biochemical indicators of iron limitation during open-ocean iron enrichment. Limnol. Oceanogr. 44: 1609-1615. http://dx.doi.org/10.4319/lo.1999.44.7 .1609.
-
(1999)
Limnol. Oceanogr.
, vol.44
, pp. 1609-1615
-
-
Erdner, D.L.1
Anderson, D.M.2
-
29
-
-
0000228768
-
The continuous culture of bacteria; a theoretical and experimental study
-
Herbert D, Elsworth R, Telling RC. 1956. The continuous culture of bacteria; a theoretical and experimental study. J. Gen. Microbiol. 14: 601-622. http://dx.doi.org/10.1099/00221287-14-3-601.
-
(1956)
J. Gen. Microbiol.
, vol.14
, pp. 601-622
-
-
Herbert, D.1
Elsworth, R.2
Telling, R.C.3
-
30
-
-
0001555399
-
Description of the chemostat
-
Novick A, Szilard L. 1950. Description of the chemostat. Science 112: 715-716. http://dx.doi.org/10.1126/science.112.2920.715.
-
(1950)
Science
, vol.112
, pp. 715-716
-
-
Novick, A.1
Szilard, L.2
-
31
-
-
75649152860
-
Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations
-
Boer VM, Crutchfield CA, Bradley PH, Botstein D, Rabinowitz JD. 2010. Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations. Mol. Biol. Cell 21: 198-211. http://dx.doi.org/10.1091/mbc.E09-07-0597.
-
(2010)
Mol. Biol. Cell
, vol.21
, pp. 198-211
-
-
Boer, V.M.1
Crutchfield, C.A.2
Bradley, P.H.3
Botstein, D.4
Rabinowitz, J.D.5
-
32
-
-
0016711037
-
High resolution two-dimensional electrophoresis of proteins
-
O'Farrell PH. 1975. High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250: 4007-4021.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 4007-4021
-
-
O'Farrell, P.H.1
-
33
-
-
10544244161
-
Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels
-
Shevchenko A, Jensen ON, Podtelejnikov AV, Sagliocco F, Wilm M, Vorm O, Mortensen P, Boucherie H, Mann M. 1996. Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels. Proc. Natl. Acad. Sci. U. S. A. 93: 14440-14445. http://dx.doi.org/10.1073/pnas.93.25.14440.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 14440-14445
-
-
Shevchenko, A.1
Jensen, O.N.2
Podtelejnikov, A.V.3
Sagliocco, F.4
Wilm, M.5
Vorm, O.6
Mortensen, P.7
Boucherie, H.8
Mann, M.9
-
34
-
-
43049096460
-
Monitoring of transcriptome and proteome profiles to investigate the cellular response of E coli towards recombinant protein expression under defined chemostat conditions
-
Dürrschmid K, Reischer H, Schmidt-Heck W, Hrebicek T, Guthke R, Rizzi A, Bayer K. 2008. Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat conditions. J. Biotechnol. 135: 34-44. http://dx.doi.org/10.1016/j.jbiotec.2008.02.013.
-
(2008)
J. Biotechnol.
, vol.135
, pp. 34-44
-
-
Dürrschmid, K.1
Reischer, H.2
Schmidt-Heck, W.3
Hrebicek, T.4
Guthke, R.5
Rizzi, A.6
Bayer, K.7
-
35
-
-
33645764133
-
Proteomic analysis of the mode of antibacterial action of silver nanoparticles
-
Lok C-N, Ho C-M, Chen R, He Q-Y, Yu W-Y, Sun H, Tam PK-H, Chiu J-F, Che C-M. 2006. Proteomic analysis of the mode of antibacterial action of silver nanoparticles. J. Proteome Res. 5: 916-924. http://dx.doi .org/10.1021/pr0504079.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 916-924
-
-
Lok, C.-N.1
Ho, C.-M.2
Chen, R.3
He, Q.-Y.4
Yu, W.-Y.5
Sun, H.6
Tam, P.K.-H.7
Chiu, J.-F.8
Che, C.-M.9
-
36
-
-
70449393144
-
Proteome analysis of the Escherichia coli heat shock response under steady-state conditions
-
Lüders S, Fallet C, Franco-Lara E. 2009. Proteome analysis of the Escherichia coli heat shock response under steady-state conditions. Proteome Sci. 7: 36. http://dx.doi.org/10.1186/1477-5956-7-36.
-
(2009)
Proteome Sci.
, vol.7
, pp. 36
-
-
Lüders, S.1
Fallet, C.2
Franco-Lara, E.3
-
37
-
-
84867391844
-
The identification of global patterns and unique signatures of proteins across 14 environments using outer membrane proteomics of bacteria
-
Schliep M, Ryall B, Ferenci T. 2012. The identification of global patterns and unique signatures of proteins across 14 environments using outer membrane proteomics of bacteria. Mol. Biosyst. 8: 3017-3027. http://dx .doi.org/10.1039/c2mb25212k.
-
(2012)
Mol. Biosyst.
, vol.8
, pp. 3017-3027
-
-
Schliep, M.1
Ryall, B.2
Ferenci, T.3
-
38
-
-
0036225829
-
Escherichia coli aconitases and oxidative stress: post-transcriptional regulation of sodA expression
-
Tang Y, Quail MA, Artymiuk PJ, Green J. 2002. Escherichia coli aconitases and oxidative stress: post-transcriptional regulation of sodA expression. Microbiology 148: 1027-1037. http://mic.sgmjournals.org/content/148/4/1027.long.
-
(2002)
Microbiology
, vol.148
, pp. 1027-1037
-
-
Tang, Y.1
Quail, M.A.2
Artymiuk, P.J.3
Green, J.4
-
39
-
-
0035213758
-
Short-and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose limited growth conditions in continuous culture and vice versa
-
Wick LM, Quadroni M, Egli T. 2001. Short-and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose limited growth conditions in continuous culture and vice versa. Environ. Microbiol. 3: 588-599. http://dx.doi.org/10.1046/j.1462-2920.2001.00231.x.
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 588-599
-
-
Wick, L.M.1
Quadroni, M.2
Egli, T.3
-
40
-
-
84875658113
-
Proteomic profiles and kinetics of development of bacteriophage T4 and its rI and rIII mutants in slowly growing Escherichia coli
-
Golec P, Karczewska-Golec J, Voigt B, Albrecht D, Schweder T, Hecker M, We{ogonek}grzyn G, ŁośM. 2013. Proteomic profiles and kinetics of development of bacteriophage T4 and its rI and rIII mutants in slowly growing Escherichia coli. J. Gen. Virol. 94: 896-905. http://dx.doi.org/10.1099/vir.0 .048686-0.
-
(2013)
J. Gen. Virol.
, vol.94
, pp. 896-905
-
-
Golec, P.1
Karczewska-Golec, J.2
Voigt, B.3
Albrecht, D.4
Schweder, T.5
Hecker, M.6
Wegrzyn, G.7
Łoś, M.8
-
41
-
-
0043032822
-
Global iron-dependent gene regulation in Escherichia coli: a new mechanism for iron homeostasis
-
McHugh JP, Rodríguez-Quiñones F, Hossein A-T, Svistunenko DA, Poole RK, Cooper CE, Andrews SC. 2003. Global iron-dependent gene regulation in Escherichia coli: a new mechanism for iron homeostasis. J. Biol. Chem. 278: 29478-29486. http://dx.doi.org/10.1074/jbc.M303381200.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 29478-29486
-
-
McHugh, J.P.1
Rodríguez-Quiñones, F.2
Hossein, A.-T.3
Svistunenko, D.A.4
Poole, R.K.5
Cooper, C.E.6
Andrews, S.C.7
-
42
-
-
0037007078
-
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
-
MasséE, Gottesman S. 2002. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 99: 4620-4625. http://dx.doi.org/10.1073/pnas.032066599.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 4620-4625
-
-
Massé, E.1
Gottesman, S.2
-
43
-
-
3142675034
-
Specific growth rate and not cell density controls the general stress response in Escherichia coli
-
Ihssen J, Egli T. 2004. Specific growth rate and not cell density controls the general stress response in Escherichia coli. Microbiology 150: 1637-1648. http://dx.doi.org/10.1099/mic.0.26849-0.
-
(2004)
Microbiology
, vol.150
, pp. 1637-1648
-
-
Ihssen, J.1
Egli, T.2
-
44
-
-
25144518340
-
Global physiological analysis of carbon-and energy-limited growing Escherichia coli confirms a high degree of catabolic flexibility and preparedness for mixed substrate utilization
-
Ihssen J, Egli T. 2005. Global physiological analysis of carbon-and energy-limited growing Escherichia coli confirms a high degree of catabolic flexibility and preparedness for mixed substrate utilization. Environ. Microbiol. 7: 1568-1581. http://dx.doi.org/10.1111/j.1462-2920 .2005.00846.x.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1568-1581
-
-
Ihssen, J.1
Egli, T.2
-
45
-
-
34447317252
-
Metabolic systems cost-benefit analysis for interpreting network structure and regulation
-
Carlson RP. 2007. Metabolic systems cost-benefit analysis for interpreting network structure and regulation. Bioinformatics 23: 1258-1264. http://dx.doi.org/10.1093/bioinformatics/btm082.
-
(2007)
Bioinformatics
, vol.23
, pp. 1258-1264
-
-
Carlson, R.P.1
-
46
-
-
58049200682
-
Decomposition of complex microbial behaviors into resource-based stress responses
-
Carlson RP. 2009. Decomposition of complex microbial behaviors into resource-based stress responses. Bioinformatics 25: 90-97. http://dx.doi .org/10.1093/bioinformatics/btn589.
-
(2009)
Bioinformatics
, vol.25
, pp. 90-97
-
-
Carlson, R.P.1
-
47
-
-
84878966835
-
Glycolytic strategy as a tradeoff between energy yield and protein cost
-
Flamholz A, Noor E, Bar-Even A, Liebermeister W, Milo R. 2013. Glycolytic strategy as a tradeoff between energy yield and protein cost. Proc. Natl. Acad. Sci. U. S. A. 110: 10039-10044. http://dx.doi.org/10.1073/pnas.1215283110.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 10039-10044
-
-
Flamholz, A.1
Noor, E.2
Bar-Even, A.3
Liebermeister, W.4
Milo, R.5
-
48
-
-
73149109962
-
Shifts in growth strategies reflect tradeoffs in cellular economics
-
Molenaar D, van Berlo R, de Ridder D, Teusink B. 2009. Shifts in growth strategies reflect tradeoffs in cellular economics. Mol. Syst. Biol. 5: 323. http://dx.doi.org/10.1038/msb.2009.82.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 323
-
-
Molenaar, D.1
van Berlo, R.2
de Ridder, D.3
Teusink, B.4
-
49
-
-
3242795003
-
The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks
-
Holzhutter HG. 2004. The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks. Eur. J. Biochem. 271: 2905-2922. http://dx.doi.org/10.1111/j.1432-1033.2004 .04213.x.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 2905-2922
-
-
Holzhutter, H.G.1
-
50
-
-
0004265596
-
Short protocols in molecular biology
-
2nd ed. Greene Publishing Associates and John Wiley & Sons, New York, NY
-
Ausubel F, Brent R, Kingston R, Moore D, Seidman JG, Smith JA, Struhl K (ed). 1992. Short protocols in molecular biology, 2nd ed. Greene Publishing Associates and John Wiley & Sons, New York, NY.
-
(1992)
-
-
Ausubel, F.1
Brent, R.2
Kingston, R.3
Moore, D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
51
-
-
3242657100
-
Colorimetric ferrozine-based assay for the quantitation of iron in cultured cells
-
Riemer J, Hoepken HH, Czerwinska H, Robinson SR, Dringen R. 2004. Colorimetric ferrozine-based assay for the quantitation of iron in cultured cells. Anal. Biochem. 331: 370-375. http://dx.doi.org/10.1016/j.ab.2004 .03.049.
-
(2004)
Anal. Biochem.
, vol.331
, pp. 370-375
-
-
Riemer, J.1
Hoepken, H.H.2
Czerwinska, H.3
Robinson, S.R.4
Dringen, R.5
-
52
-
-
0031859738
-
Regulation of porin-mediated outer membrane permeability by nutrient limitation in Escherichia coli
-
Liu X, Ferenci T. 1998. Regulation of porin-mediated outer membrane permeability by nutrient limitation in Escherichia coli. J. Bacteriol. 180: 3917-3922.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 3917-3922
-
-
Liu, X.1
Ferenci, T.2
-
53
-
-
0028116314
-
The growth of Escherichia coli in glucose-limited chemostat cultures: a re-examination of the kinetics
-
Senn H, Lendenmann U, Snozzi M, Hamer G, Egli T. 1994. The growth of Escherichia coli in glucose-limited chemostat cultures: a re-examination of the kinetics. Biochim. Biophys. Acta 1201: 424-436. http://dx.doi.org/10.1016/0304-4165(94)90072-8.
-
(1994)
Biochim. Biophys. Acta
, vol.1201
, pp. 424-436
-
-
Senn, H.1
Lendenmann, U.2
Snozzi, M.3
Hamer, G.4
Egli, T.5
-
54
-
-
37049093005
-
The Berthelot or indophenol reaction and its use in the analytical chemistry of nitrogen: a review
-
Searle PL. 1984. The Berthelot or indophenol reaction and its use in the analytical chemistry of nitrogen: a review. Analyst 109: 549-568. http://dx .doi.org/10.1039/an9840900549.
-
(1984)
Analyst
, vol.109
, pp. 549-568
-
-
Searle, P.L.1
-
55
-
-
84903882044
-
4500-NH3 F phenate method
-
In Eaton AD, Clesceri LS, Rice EW, Greenberg AE, Franson MAH (ed), 21st (centennial) ed. American Public Health Association/American Water Works Association/Water Environment Federation, Washington, DC
-
Stieg S. 2005. 4500-NH3 F phenate method, p 4-114. In Eaton AD, Clesceri LS, Rice EW, Greenberg AE, Franson MAH (ed), Standard methods for the examination of water and wastewater, 21st (centennial) ed. American Public Health Association/American Water Works Association/Water Environment Federation, Washington, DC.
-
(2005)
Standard methods for the examination of water and wastewater
, pp. 4-114
-
-
Stieg, S.1
-
56
-
-
0023127806
-
Universal chemical assay for the detection and determination of siderophores
-
Schwyn B, Neilands JB. 1987. Universal chemical assay for the detection and determination of siderophores. Anal. Biochem. 160: 47-56. http://dx .doi.org/10.1016/0003-2697(87)90612-9.
-
(1987)
Anal. Biochem.
, vol.160
, pp. 47-56
-
-
Schwyn, B.1
Neilands, J.B.2
-
57
-
-
84903888955
-
Zwitterionic dyes for labeling in proteomic and other biological analyses
-
582+260, January
-
Dratz EA, Grieco PA. January 2004. Zwitterionic dyes for labeling in proteomic and other biological analyses. US patent 7,582,260.
-
(2004)
US patent
, vol.7
-
-
Dratz, E.A.1
Grieco, P.A.2
-
58
-
-
84866412649
-
Proteomic and systems biology analysis of monocytes exposed to securinine, a GABAA receptor antagonist and immune adjuvant
-
Shipman M, Lubick K, Fouchard D, Guram R, Grieco P, Jutila M, Dratz EA. 2012. Proteomic and systems biology analysis of monocytes exposed to securinine, a GABAA receptor antagonist and immune adjuvant. PLoS One 7: e41278. http://dx.doi.org/10.1371/journal.pone.0041278.
-
(2012)
PLoS One
, vol.7
-
-
Shipman, M.1
Lubick, K.2
Fouchard, D.3
Guram, R.4
Grieco, P.5
Jutila, M.6
Dratz, E.A.7
-
59
-
-
3042665732
-
Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis
-
Candiano G, Bruschi M, Musante L, Santucci L, Ghiggeri GM, Carnemolla B, Orecchia P, Zardi L, Righetti PG. 2004. Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis 25: 1327-1333. http://dx.doi.org/10.1002/elps.200305844.
-
(2004)
Electrophoresis
, vol.25
, pp. 1327-1333
-
-
Candiano, G.1
Bruschi, M.2
Musante, L.3
Santucci, L.4
Ghiggeri, G.M.5
Carnemolla, B.6
Orecchia, P.7
Zardi, L.8
Righetti, P.G.9
-
60
-
-
0019801599
-
Iron uptake and iron limited growth of Escherichia coli K-12
-
Hartmann A, Braun V. 1981. Iron uptake and iron limited growth of Escherichia coli K-12. Arch. Microbiol. 130: 353-356. http://dx.doi.org/10 .1007/BF00414599.
-
(1981)
Arch. Microbiol.
, vol.130
, pp. 353-356
-
-
Hartmann, A.1
Braun, V.2
-
61
-
-
0026222925
-
Cybernetic modeling of iron limited growth and siderophore production
-
Alexander ML, Ramkrishna D. 1991. Cybernetic modeling of iron limited growth and siderophore production. Biotechnol. Bioeng. 38: 637-652. http://dx.doi.org/10.1002/bit.260380609.
-
(1991)
Biotechnol. Bioeng.
, vol.38
, pp. 637-652
-
-
Alexander, M.L.1
Ramkrishna, D.2
-
62
-
-
0035809231
-
Formate accumulation due to DNA release in aerobic cultivations of Escherichia coli
-
Castan A, Sven-Olof E. 2002. Formate accumulation due to DNA release in aerobic cultivations of Escherichia coli. Biotechnol. Bioeng. 77: 324-328. http://dx.doi.org/10.1002/bit.1198.
-
(2002)
Biotechnol. Bioeng.
, vol.77
, pp. 324-328
-
-
Castan, A.1
Sven-Olof, E.2
-
63
-
-
33750973382
-
Metabolic characterization of E coli citrate synthase and phosphoenolpyruvate carboxylase mutants in aerobic cultures
-
De Maeseneire SL, De Mey M, Vandedrinck S, Vandamme EJ. 2006. Metabolic characterization of E. coli citrate synthase and phosphoenolpyruvate carboxylase mutants in aerobic cultures. Biotechnol. Lett. 28: 1945-1953. http://dx.doi.org/10.1007/s10529-006-9182-8.
-
(2006)
Biotechnol. Lett.
, vol.28
, pp. 1945-1953
-
-
De Maeseneire, S.L.1
Vandedrinck, S.2
Vandamme, E.J.3
-
64
-
-
0033895840
-
Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli
-
Alexeeva S, de Kort B, Sawers G, Hellingwerf KJ, Teixeira JM. 2000. Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli. J. Bacteriol. 182: 4934-4940. http://dx.doi.org/10.1128/JB.182.17.4934-4940.2000.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 4934-4940
-
-
Alexeeva, S.1
de Kort, B.2
Sawers, G.3
Hellingwerf, K.J.4
Teixeira, J.M.5
-
65
-
-
0036177861
-
Quantitative assessment of oxygen availability: perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli
-
Alexeeva S, Hellingwerf KJ, de Mattos MJT. 2002. Quantitative assessment of oxygen availability: perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli. J. Bacteriol. 184: 1402-1406. http://dx.doi.org/10.1128/JB.184.5.1402-1406.2002.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 1402-1406
-
-
Alexeeva, S.1
Hellingwerf, K.J.2
De Mattos, M.J.T.3
-
66
-
-
0032753923
-
Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
-
Sauer U, Lasko DR, Fiaux J, Hochuli M, Glaser R, Szyperski T, Wüthrich K, Bailey JE. 1999. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 181: 6679-6688.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6679-6688
-
-
Sauer, U.1
Lasko, D.R.2
Fiaux, J.3
Hochuli, M.4
Glaser, R.5
Szyperski, T.6
Wüthrich, K.7
Bailey, J.E.8
-
67
-
-
0029832195
-
Mechanisms of acid resistance in enterohemorrhagic Escherichia coli
-
Lin J, Smith MP, Chapin KC, Baik HS, Bennett GN, Foster JW. 1996. Mechanisms of acid resistance in enterohemorrhagic Escherichia coli. Appl. Environ. Microbiol. 62: 3094-3100.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3094-3100
-
-
Lin, J.1
Smith, M.P.2
Chapin, K.C.3
Baik, H.S.4
Bennett, G.N.5
Foster, J.W.6
-
68
-
-
33947136225
-
The lysine decarboxylase CadA protects Escherichia coli starved of phosphate against fermentation acids
-
Moreau PL. 2007. The lysine decarboxylase CadA protects Escherichia coli starved of phosphate against fermentation acids. J. Bacteriol. 189: 2249-2261. http://dx.doi.org/10.1128/JB.01306-06.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2249-2261
-
-
Moreau, P.L.1
-
69
-
-
0023578514
-
Cloning and promoter identification of the iron-regulated cir gene of Escherichia coli
-
Griggs DW, Tharp BB, Konisky J. 1987. Cloning and promoter identification of the iron-regulated cir gene of Escherichia coli. J. Bacteriol. 169: 5343-5352.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 5343-5352
-
-
Griggs, D.W.1
Tharp, B.B.2
Konisky, J.3
-
70
-
-
34249881603
-
Quantitative profile of the uropathogenic Escherichia coli outer membrane proteome during growth in human urine
-
Alteri CJ, Mobley HLT. 2007. Quantitative profile of the uropathogenic Escherichia coli outer membrane proteome during growth in human urine. Infect. Immun. 75: 2679-2688. http://dx.doi.org/10.1128/IAI .00076-06.
-
(2007)
Infect. Immun.
, vol.75
, pp. 2679-2688
-
-
Alteri, C.J.1
Mobley, H.L.T.2
-
71
-
-
34547637894
-
Uropathogenic Escherichia coli outer membrane antigens expressed during urinary tract infection
-
Hagan EC, Mobley HLT. 2007. Uropathogenic Escherichia coli outer membrane antigens expressed during urinary tract infection. Infect. Immun. 75: 3941-3949. http://dx.doi.org/10.1128/IAI.00337-07.
-
(2007)
Infect. Immun.
, vol.75
, pp. 3941-3949
-
-
Hagan, E.C.1
Mobley, H.L.T.2
-
72
-
-
0041462889
-
Proteomic analysis of the Escherichia coli outer membrane
-
Molloy MP, Herbert BR, Slade MB, Rabilloud T, Nouwens AS, Williams KL, Gooley AA. 2000. Proteomic analysis of the Escherichia coli outer membrane. Eur. J. Biochem. 267: 2871-2881. http://dx.doi.org/10 .1046/j.1432-1327.2000.01296.x.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 2871-2881
-
-
Molloy, M.P.1
Herbert, B.R.2
Slade, M.B.3
Rabilloud, T.4
Nouwens, A.S.5
Williams, K.L.6
Gooley, A.A.7
-
73
-
-
0344443759
-
A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli
-
Fischer E, Sauer U. 2003. A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. J. Biol. Chem. 278: 46446-46451. http://dx.doi.org/10.1074/jbc.M307968200.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 46446-46451
-
-
Fischer, E.1
Sauer, U.2
-
74
-
-
14244270260
-
Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures
-
Hua Q, Yang C, Oshima T, Mori H, Shimizu K. 2004. Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures. Appl. Environ. Microbiol. 70: 2354-2366. http://dx.doi.org/10.1128/AEM.70.4.2354-2366.2004.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2354-2366
-
-
Hua, Q.1
Yang, C.2
Oshima, T.3
Mori, H.4
Shimizu, K.5
-
75
-
-
77957347506
-
Molecular-level tradeoffs and metabolic adaptation to simultaneous stressors
-
Carlson RP, Taffs RL. 2010. Molecular-level tradeoffs and metabolic adaptation to simultaneous stressors. Curr. Opin. Biotechnol. 21: 670-676. http://dx.doi.org/10.1016/j.copbio.2010.05.011.
-
(2010)
Curr. Opin. Biotechnol.
, vol.21
, pp. 670-676
-
-
Carlson, R.P.1
Taffs, R.L.2
-
76
-
-
26444505976
-
Effect of RyhB small RNA on global iron use in Escherichia coli
-
MasséE, Vanderpool CK, Gottesman S. 2005. Effect of RyhB small RNA on global iron use in Escherichia coli. J. Bacteriol. 187: 6962-6971. http://dx.doi.org/10.1128/JB.187.20.6962-6971.2005.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6962-6971
-
-
Massé, E.1
Vanderpool, C.K.2
Gottesman, S.3
-
77
-
-
0036148845
-
AcnC of Escherichia coli is a 2-methylcitrate dehydratase (PrpD) that can use citrate and isocitrate as substrates
-
Blank L, Green J, Guest JR. 2002. AcnC of Escherichia coli is a 2-methylcitrate dehydratase (PrpD) that can use citrate and isocitrate as substrates. Microbiology 148: 133-146. http://mic.sgmjournals.org/content/148/1/1 33.long.
-
(2002)
Microbiology
, vol.148
, pp. 133-146
-
-
Blank, L.1
Green, J.2
Guest, J.R.3
-
78
-
-
0028113546
-
Two genetically-distinct and differentiallyregulated aconitases (AcnA and AcnB) in Escherichia coli
-
Gruer MJ, Guest JR. 1994. Two genetically-distinct and differentiallyregulated aconitases (AcnA and AcnB) in Escherichia coli. Microbiology 140: 2531-2541. http://dx.doi.org/10.1099/00221287-140-10-2531.
-
(1994)
Microbiology
, vol.140
, pp. 2531-2541
-
-
Gruer, M.J.1
Guest, J.R.2
-
79
-
-
0037214441
-
Contrasting sensitivities of Escherichia coli aconitases A and B to oxidation and iron depletion
-
Varghese S, Tang Y, Imlay JA. 2003. Contrasting sensitivities of Escherichia coli aconitases A and B to oxidation and iron depletion. J. Bacteriol. 185: 221-230. http://dx.doi.org/10.1128/JB.185.1.221-230.2003.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 221-230
-
-
Varghese, S.1
Tang, Y.2
Imlay, J.A.3
-
80
-
-
33748043648
-
Staphylococcus aureus redirects central metabolism to increase iron availability
-
Friedman DB, Stauff DL, Pishchany G, Whitwell CW, Torres VJ, Skaar EP. 2006. Staphylococcus aureus redirects central metabolism to increase iron availability. PLoS Pathog. 2: e87. http://dx.doi.org/10.1371/journal .ppat.0020087.
-
(2006)
PLoS Pathog.
, vol.2
-
-
Friedman, D.B.1
Stauff, D.L.2
Pishchany, G.3
Whitwell, C.W.4
Torres, V.J.5
Skaar, E.P.6
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