-
1
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter O, Brown PO, Botstein D, (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci USA 97: 10101-10106
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
2
-
-
0035733887
-
Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions
-
Backhus LE, DeRisi J, Bisson LF, (2001) Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions. FEMS Yeast Res 1: 111-125
-
(2001)
FEMS Yeast Res
, vol.1
, pp. 111-125
-
-
Backhus, L.E.1
Derisi, J.2
Bisson, L.F.3
-
3
-
-
33846798394
-
The transcription factor Gcr1 stimulates cell growth by participating in nutrient-responsive gene expression on a global level
-
Barbara KE, Haley TM, Willis KA, Santangelo GM, (2007) The transcription factor Gcr1 stimulates cell growth by participating in nutrient-responsive gene expression on a global level. Mol Genet Genomics 277: 171-188
-
(2007)
Mol Genet Genomics
, vol.277
, pp. 171-188
-
-
Barbara, K.E.1
Haley, T.M.2
Willis, K.A.3
Santangelo, G.M.4
-
4
-
-
0035114070
-
Osmotic stress causes a G1 cell cycle delay and downregulation of Cln3/Cdc28 activity in Saccharomyces cerevisiae
-
Bellí G, Garí E, Aldea M, Herrero E, (2001) Osmotic stress causes a G1 cell cycle delay and downregulation of Cln3/Cdc28 activity in Saccharomyces cerevisiae. Mol Microbiol 39: 1022-1035
-
(2001)
Mol Microbiol
, vol.39
, pp. 1022-1035
-
-
Bellí, G.1
Garí, E.2
Aldea, M.3
Herrero, E.4
-
5
-
-
77955478355
-
A consensus of core protein complex compositions for Saccharomyces cerevisiae
-
Benschop JJ, Brabers N, van Leenen D, Bakker LV, van Deutekom HWM, van Berkum NL, Apweiler E, Lijnzaad P, Holstege FCP, Kemmeren P, (2010) A consensus of core protein complex compositions for Saccharomyces cerevisiae. Mol Cell 38: 916-928
-
(2010)
Mol Cell
, vol.38
, pp. 916-928
-
-
Benschop, J.J.1
Brabers, N.2
Van Leenen, D.3
Bakker, L.V.4
Van Deutekom, H.W.M.5
Van Berkum, N.L.6
Apweiler, E.7
Lijnzaad, P.8
Holstege, F.C.P.9
Kemmeren, P.10
-
6
-
-
84861897793
-
Mass spectrometry-based proteomics and network biology
-
Bensimon A, Heck AJR, Aebersold R, (2012) Mass spectrometry-based proteomics and network biology. Annu Rev Biochem 81: 379-405
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 379-405
-
-
Bensimon, A.1
Heck, A.J.R.2
Aebersold, R.3
-
8
-
-
38749112941
-
Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast
-
Brauer MJ, Huttenhower C, Airoldi EM, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, Botstein D, (2008) Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol Biol Cell 19: 352-367
-
(2008)
Mol Biol Cell
, vol.19
, pp. 352-367
-
-
Brauer, M.J.1
Huttenhower, C.2
Airoldi, E.M.3
Rosenstein, R.4
Matese, J.C.5
Gresham, D.6
Boer, V.M.7
Troyanskaya, O.G.8
Botstein, D.9
-
9
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, Jennings EG, Lee TI, True HL, Lander ES, Young RA, (2001) Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell 12: 323-337
-
(2001)
Mol Biol Cell
, vol.12
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
Jennings, E.G.6
Lee, T.I.7
True, H.L.8
Lander, E.S.9
Young, R.A.10
-
10
-
-
34347387832
-
Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity
-
Chen Z, Odstrcil EA, Tu BP, McKnight SL, (2007) Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity. Science 316: 1916-1919
-
(2007)
Science
, vol.316
, pp. 1916-1919
-
-
Chen, Z.1
Odstrcil, E.A.2
Tu, B.P.3
McKnight, S.L.4
-
11
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz I, (1998) The transcriptional program of sporulation in budding yeast. Science 282: 699-705
-
(1998)
Science
, vol.282
, pp. 699-705
-
-
Chu, S.1
Derisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
Herskowitz, I.7
-
12
-
-
0037022595
-
Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms
-
Dasgupta A, Darst RP, Martin KJ, Afshari CA, Auble DT, (2002) Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms. Proc Natl Acad Sci USA 99: 2666-2671
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 2666-2671
-
-
Dasgupta, A.1
Darst, R.P.2
Martin, K.J.3
Afshari, C.A.4
Auble, D.T.5
-
13
-
-
3042618914
-
Sir Antagonist 1 (San1) is a ubiquitin ligase
-
Dasgupta A, Ramsey KL, Smith JS, Auble DT, (2004) Sir Antagonist 1 (San1) is a ubiquitin ligase. J Biol Chem 279: 26830-26838
-
(2004)
J Biol Chem
, vol.279
, pp. 26830-26838
-
-
Dasgupta, A.1
Ramsey, K.L.2
Smith, J.S.3
Auble, D.T.4
-
14
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi JL, Iyer VR, Brown PO, (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
Derisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
15
-
-
0035157544
-
Genome-wide responses to mitochondrial dysfunction
-
Epstein CB, Waddle JA, Hale W 4th, Davé V, Thornton J, Macatee TL, Garner HR, Butow RA, (2001) Genome-wide responses to mitochondrial dysfunction. Mol Biol Cell 12: 297-308
-
(2001)
Mol Biol Cell
, vol.12
, pp. 297-308
-
-
Epstein, C.B.1
Waddle, J.A.2
Hale IV, W.3
Davé, V.4
Thornton, J.5
Macatee, T.L.6
Garner, H.R.7
Butow, R.A.8
-
16
-
-
80051716158
-
Commitment to a cellular transition precedes genome-wide transcriptional change
-
Eser U, Falleur-Fettig M, Johnson A, Skotheim JM, (2011) Commitment to a cellular transition precedes genome-wide transcriptional change. Mol Cell 43: 515-527
-
(2011)
Mol Cell
, vol.43
, pp. 515-527
-
-
Eser, U.1
Falleur-Fettig, M.2
Johnson, A.3
Skotheim, J.M.4
-
17
-
-
0034817393
-
Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression
-
Fazzio TG, Kooperberg C, Goldmark JP, Neal C, Basom R, Delrow J, Tsukiyama T, (2001) Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression. Mol Cell Biol 21: 6450-6460
-
(2001)
Mol Cell Biol
, vol.21
, pp. 6450-6460
-
-
Fazzio, T.G.1
Kooperberg, C.2
Goldmark, J.P.3
Neal, C.4
Basom, R.5
Delrow, J.6
Tsukiyama, T.7
-
18
-
-
0033578424
-
Systematic changes in gene expression patterns following adaptive evolution in yeast
-
Ferea TL, Botstein D, Brown PO, Rosenzweig RF, (1999) Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc Natl Acad Sci USA 96: 9721-9726
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 9721-9726
-
-
Ferea, T.L.1
Botstein, D.2
Brown, P.O.3
Rosenzweig, R.F.4
-
19
-
-
0033538465
-
Ploidy regulation of gene expression
-
Galitski T, Saldanha AJ, Styles CA, Lander ES, Fink GR, (1999) Ploidy regulation of gene expression. Science 285: 251-254
-
(1999)
Science
, vol.285
, pp. 251-254
-
-
Galitski, T.1
Saldanha, A.J.2
Styles, C.A.3
Lander, E.S.4
Fink, G.R.5
-
20
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO, (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11: 4241-4257
-
(2000)
Mol Biol Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
21
-
-
0037089082
-
Robust G1 checkpoint arrest in budding yeast: Dependence on DNA damage signaling and repair
-
Gerald JNF, Benjamin JM, Kron SJ, (2002) Robust G1 checkpoint arrest in budding yeast: dependence on DNA damage signaling and repair. J Cell Sci 115: 1749-1757
-
(2002)
J Cell Sci
, vol.115
, pp. 1749-1757
-
-
Gerald, J.N.F.1
Benjamin, J.M.2
Kron, S.J.3
-
22
-
-
77953204308
-
High-resolution transcription atlas of the mitotic cell cycle in budding yeast
-
Granovskaia MV, Jensen LJ, Ritchie ME, Toedling J, Ning Y, Bork P, Huber W, Steinmetz LM, (2010) High-resolution transcription atlas of the mitotic cell cycle in budding yeast. Genome Biol 11: R24
-
(2010)
Genome Biol
, vol.11
-
-
Granovskaia, M.V.1
Jensen, L.J.2
Ritchie, M.E.3
Toedling, J.4
Ning, Y.5
Bork, P.6
Huber, W.7
Steinmetz, L.M.8
-
23
-
-
0033592983
-
Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins
-
Hardwick JS, Kuruvilla FG, Tong JK, Shamji AF, Schreiber SL, (1999) Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins. Proc Natl Acad Sci USA 96: 14866-14870
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 14866-14870
-
-
Hardwick, J.S.1
Kuruvilla, F.G.2
Tong, J.K.3
Shamji, A.F.4
Schreiber, S.L.5
-
24
-
-
52049084405
-
The anchor-away technique: Rapid, conditional establishment of yeast mutant phenotypes
-
Haruki H, Nishikawa J, Laemmli UK, (2008) The anchor-away technique: rapid, conditional establishment of yeast mutant phenotypes. Mol Cell 31: 925-932
-
(2008)
Mol Cell
, vol.31
, pp. 925-932
-
-
Haruki, H.1
Nishikawa, J.2
Laemmli, U.K.3
-
26
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
Holstege FC, Jennings EG, Wyrick JJ, Lee TI, Hengartner CJ, Green MR, Golub TR, Lander ES, Young RA, (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717-728
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
Green, M.R.6
Golub, T.R.7
Lander, E.S.8
Young, R.A.9
-
27
-
-
34247629588
-
Genetic reconstruction of a functional transcriptional regulatory network
-
Hu Z, Killion PJ, Iyer VR, (2007) Genetic reconstruction of a functional transcriptional regulatory network. Nat Genet 39: 683-687
-
(2007)
Nat Genet
, vol.39
, pp. 683-687
-
-
Hu, Z.1
Killion, P.J.2
Iyer, V.R.3
-
28
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, Bennett HA, Coffey E, Dai H, He YD, et al, (2000) Functional discovery via a compendium of expression profiles. Cell 102: 109-126
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.R.1
Marton, M.J.2
Jones, A.R.3
Roberts, C.J.4
Stoughton, R.5
Armour, C.D.6
Bennett, H.A.7
Coffey, E.8
Dai, H.9
He, Y.D.10
-
30
-
-
18244384210
-
Multiple-laboratory comparison of microarray platforms
-
Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JGN, Geoghegan J, Germino G, et al, (2005) Multiple-laboratory comparison of microarray platforms. Nat Methods 2: 345-350
-
(2005)
Nat Methods
, vol.2
, pp. 345-350
-
-
Irizarry, R.A.1
Warren, D.2
Spencer, F.3
Kim, I.F.4
Biswal, S.5
Frank, B.C.6
Gabrielson, E.7
Garcia, J.G.N.8
Geoghegan, J.9
Germino, G.10
-
31
-
-
0033772765
-
Regulatory networks revealed by transcriptional profiling of damaged Saccharomyces cerevisiae cells: Rpn4 links base excision repair with proteasomes
-
Jelinsky SA, Estep P, Church GM, Samson LD, (2000) Regulatory networks revealed by transcriptional profiling of damaged Saccharomyces cerevisiae cells: Rpn4 links base excision repair with proteasomes. Mol Cell Biol 20: 8157-8167
-
(2000)
Mol Cell Biol
, vol.20
, pp. 8157-8167
-
-
Jelinsky, S.A.1
Estep, P.2
Church, G.M.3
Samson, L.D.4
-
32
-
-
0018955106
-
Ribosomal precursor RNA metabolism and cell division in the yeast Saccharomyces cerevisiae
-
Johnston GC, Singer RA, (1980) Ribosomal precursor RNA metabolism and cell division in the yeast Saccharomyces cerevisiae. Mol Genet Genomics 178: 357-360
-
(1980)
Mol Genet Genomics
, vol.178
, pp. 357-360
-
-
Johnston, G.C.1
Singer, R.A.2
-
33
-
-
84899514789
-
Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors
-
Kemmeren P, Sameith K, van de Pasch LAL, Benschop JJ, Lenstra TL, Margaritis T, O'Duibhir E, Apweiler E, van Wageningen S, Ko CW, et al, (2014) Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors. Cell 157: 740-752
-
(2014)
Cell
, vol.157
, pp. 740-752
-
-
Kemmeren, P.1
Sameith, K.2
Van De Pasch, L.A.L.3
Benschop, J.J.4
Lenstra, T.L.5
Margaritis, T.6
O'Duibhir, E.7
Apweiler, E.8
Van Wageningen, S.9
Ko, C.W.10
-
34
-
-
84889244978
-
Promoters maintain their relative activity levels under different growth conditions
-
Keren L, Zackay O, Lotan-Pompan M, Barenholz U, Dekel E, Sasson V, Aidelberg G, Bren A, Zeevi D, Weinberger A, et al, (2013) Promoters maintain their relative activity levels under different growth conditions. Mol Syst Biol 9: 701.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 701
-
-
Keren, L.1
Zackay, O.2
Lotan-Pompan, M.3
Barenholz, U.4
Dekel, E.5
Sasson, V.6
Aidelberg, G.7
Bren, A.8
Zeevi, D.9
Weinberger, A.10
-
35
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
36
-
-
0001262663
-
Redundant roles for the TFIID and SAGA complexes in global transcription
-
Lee TI, Causton HC, Holstege FC, Shen WC, Hannett N, Jennings EG, Winston F, Green MR, Young RA, (2000) Redundant roles for the TFIID and SAGA complexes in global transcription. Nature 405: 701-704
-
(2000)
Nature
, vol.405
, pp. 701-704
-
-
Lee, T.I.1
Causton, H.C.2
Holstege, F.C.3
Shen, W.C.4
Hannett, N.5
Jennings, E.G.6
Winston, F.7
Green, M.R.8
Young, R.A.9
-
37
-
-
79955949044
-
The specificity and topology of chromatin interaction pathways in yeast
-
Lenstra TL, Benschop JJ, Kim T, Schulze JM, Brabers NACH, Margaritis T, van de Pasch LAL, van Heesch SAAC, Brok MO, Groot Koerkamp MJA, et al, (2011) The specificity and topology of chromatin interaction pathways in yeast. Mol Cell 42: 536-549
-
(2011)
Mol Cell
, vol.42
, pp. 536-549
-
-
Lenstra, T.L.1
Benschop, J.J.2
Kim, T.3
Schulze, J.M.4
Brabers, N.5
Margaritis, T.6
Van De Pasch, L.A.L.7
Van Heesch, S.8
Brok, M.O.9
Groot Koerkamp, M.J.A.10
-
38
-
-
84897397058
-
FeatureCounts: An efficient general purpose program for assigning sequence reads to genomic features
-
Liao Y, Smyth GK, Shi W, (2014) featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30: 923-930
-
(2014)
Bioinformatics
, vol.30
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
-
39
-
-
47649125318
-
Tuning gene expression to changing environments: From rapid responses to evolutionary adaptation
-
Lõpez-Maury L, Marguerat S, Bähler J, (2008) Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet 9: 583-593
-
(2008)
Nat Rev Genet
, vol.9
, pp. 583-593
-
-
Lõpez-Maury, L.1
Marguerat, S.2
Bähler, J.3
-
40
-
-
0042838315
-
Expression deconvolution: A reinterpretation of DNA microarray data reveals dynamic changes in cell populations
-
Lu P, Nakorchevskiy A, Marcotte EM, (2003) Expression deconvolution: a reinterpretation of DNA microarray data reveals dynamic changes in cell populations. Proc Natl Acad Sci USA 100: 10370-10375
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 10370-10375
-
-
Lu, P.1
Nakorchevskiy, A.2
Marcotte, E.M.3
-
41
-
-
33645769260
-
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
-
MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E, (2006) An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7: 113
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
Macisaac, K.D.1
Wang, T.2
Gordon, D.B.3
Gifford, D.K.4
Stormo, G.D.5
Fraenkel, E.6
-
42
-
-
0033607161
-
Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants
-
Madhani HD, Galitski T, Lander ES, Fink GR, (1999) Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants. Proc Natl Acad Sci USA 96: 12530-12535
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 12530-12535
-
-
Madhani, H.D.1
Galitski, T.2
Lander, E.S.3
Fink, G.R.4
-
43
-
-
0020264211
-
Quantitative analysis of the heat shock response of Saccharomyces cerevisiae
-
Miller MJ, Xuong NH, Geiduschek EP, (1982) Quantitative analysis of the heat shock response of Saccharomyces cerevisiae. J Bacteriol 151: 311-327
-
(1982)
J Bacteriol
, vol.151
, pp. 311-327
-
-
Miller, M.J.1
Xuong, N.H.2
Geiduschek, E.P.3
-
44
-
-
78650930357
-
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
-
Miller C, Schwalb B, Maier K, Schulz D, Dümcke S, Zacher B, Mayer A, Sydow J, Marcinowski L, Dölken L, et al, (2011) Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol 7: 458
-
(2011)
Mol Syst Biol
, vol.7
, pp. 458
-
-
Miller, C.1
Schwalb, B.2
Maier, K.3
Schulz, D.4
Dümcke, S.5
Zacher, B.6
Mayer, A.7
Sydow, J.8
Marcinowski, L.9
Dölken, L.10
-
45
-
-
84859586432
-
The response to heat shock and oxidative stress in Saccharomyces cerevisiae
-
Morano KA, Grant CM, Moye-Rowley WS, (2012) The response to heat shock and oxidative stress in Saccharomyces cerevisiae. Genetics 190: 1157-1195
-
(2012)
Genetics
, vol.190
, pp. 1157-1195
-
-
Morano, K.A.1
Grant, C.M.2
Moye-Rowley, W.S.3
-
46
-
-
73349085934
-
An auxin-based degron system for the rapid depletion of proteins in nonplant cells
-
Nishimura K, Fukagawa T, Takisawa H, Kakimoto T, Kanemaki M, (2009) An auxin-based degron system for the rapid depletion of proteins in nonplant cells. Nat Methods 6: 917-922
-
(2009)
Nat Methods
, vol.6
, pp. 917-922
-
-
Nishimura, K.1
Fukagawa, T.2
Takisawa, H.3
Kakimoto, T.4
Kanemaki, M.5
-
47
-
-
0033637520
-
New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis
-
Ogawa N, DeRisi J, Brown PO, (2000) New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis. Mol Biol Cell 11: 4309-4321
-
(2000)
Mol Biol Cell
, vol.11
, pp. 4309-4321
-
-
Ogawa, N.1
Derisi, J.2
Brown, P.O.3
-
48
-
-
0037721238
-
Budding yeast CTDK-I is required for DNA damage-induced transcription
-
Ostapenko D, Solomon MJ, (2003) Budding yeast CTDK-I is required for DNA damage-induced transcription. Eukaryot Cell 2: 274-283
-
(2003)
Eukaryot Cell
, vol.2
, pp. 274-283
-
-
Ostapenko, D.1
Solomon, M.J.2
-
49
-
-
0033672594
-
The core meiotic transcriptome in budding yeasts
-
Primig M, Williams RM, Winzeler EA, Tevzadze GG, Conway AR, Hwang SY, Davis RW, Esposito RE, (2000) The core meiotic transcriptome in budding yeasts. Nat Genet 26: 415-423
-
(2000)
Nat Genet
, vol.26
, pp. 415-423
-
-
Primig, M.1
Williams, R.M.2
Winzeler, E.A.3
Tevzadze, G.G.4
Conway, A.R.5
Hwang, S.Y.6
Davis, R.W.7
Esposito, R.E.8
-
50
-
-
33845935641
-
Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae
-
Regenberg B, Grotkjaer T, Winther O, Fausbøll A, Akesson M, Bro C, Hansen LK, Brunak S, Nielsen J, (2006) Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae. Genome Biol 7: R107
-
(2006)
Genome Biol
, vol.7
-
-
Regenberg, B.1
Grotkjaer, T.2
Winther, O.3
Fausbøll, A.4
Akesson, M.5
Bro, C.6
Hansen, L.K.7
Brunak, S.8
Nielsen, J.9
-
51
-
-
0034603061
-
Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles
-
Roberts CJ, Nelson B, Marton MJ, Stoughton R, Meyer MR, Bennett HA, He YD, Dai H, Walker WL, Hughes TR, et al, (2000) Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Science 287: 873-880
-
(2000)
Science
, vol.287
, pp. 873-880
-
-
Roberts, C.J.1
Nelson, B.2
Marton, M.J.3
Stoughton, R.4
Meyer, M.R.5
Bennett, H.A.6
He, Y.D.7
Dai, H.8
Walker, W.L.9
Hughes, T.R.10
-
52
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
53
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth FP, Hughes JD, Estep PW, Church GM, (1998) Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat Biotechnol 16: 939-945
-
(1998)
Nat Biotechnol
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
54
-
-
0027509063
-
Heat shock-mediated cell cycle blockage and G1 cyclin expression in the yeast Saccharomyces cerevisiae
-
Rowley A, Johnston GC, Butler B, Werner-Washburne M, Singer RA, (1993) Heat shock-mediated cell cycle blockage and G1 cyclin expression in the yeast Saccharomyces cerevisiae. Mol Cell Biol 13: 1034-1041
-
(1993)
Mol Cell Biol
, vol.13
, pp. 1034-1041
-
-
Rowley, A.1
Johnston, G.C.2
Butler, B.3
Werner-Washburne, M.4
Singer, R.A.5
-
55
-
-
0036628541
-
Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods
-
Shedden K, Cooper S, (2002) Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods. Nucleic Acids Res 30: 2920-2929
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2920-2929
-
-
Shedden, K.1
Cooper, S.2
-
56
-
-
33644872577
-
Limma: Linear models for microarray data
-
In, Gentleman R. Carey V. Dudoit S. Irizarry R. Huber W. (eds), pp. New York: Springer
-
Smyth GK, (2005) Limma: linear models for microarray data. In Bioinformatics and Computational Biology Solutions using R and Bioconductor, Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, (eds), pp 397-420. New York: Springer
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
57
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B, (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9: 3273-3297
-
(1998)
Mol Biol Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
58
-
-
84865249952
-
Transcription factors: From enhancer binding to developmental control
-
Spitz F, Furlong EEM, (2012) Transcription factors: from enhancer binding to developmental control. Nat Rev Genet 13: 613-626
-
(2012)
Nat Rev Genet
, vol.13
, pp. 613-626
-
-
Spitz, F.1
Furlong, E.E.M.2
-
59
-
-
0034724520
-
Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation
-
Travers KJ, Patil CK, Wodicka L, Lockhart DJ, Weissman JS, Walter P, (2000) Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. Cell 101: 249-258
-
(2000)
Cell
, vol.101
, pp. 249-258
-
-
Travers, K.J.1
Patil, C.K.2
Wodicka, L.3
Lockhart, D.J.4
Weissman, J.S.5
Walter, P.6
-
60
-
-
27944487902
-
Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes
-
Tu BP, Kudlicki A, Rowicka M, McKnight SL, (2005) Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 310: 1152-1158
-
(2005)
Science
, vol.310
, pp. 1152-1158
-
-
Tu, B.P.1
Kudlicki, A.2
Rowicka, M.3
McKnight, S.L.4
-
61
-
-
79960065233
-
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast
-
Van Dijk EL, Chen CL, d' Aubenton-Carafa Y, Gourvennec S, Kwapisz M, Roche V, Bertrand C, Silvain M, Legoix-Né P, Loeillet S, et al, (2011) XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast. Nature 475: 114-117
-
(2011)
Nature
, vol.475
, pp. 114-117
-
-
Van Dijk, E.L.1
Chen, C.L.2
Aubenton-Carafa Y, D.'.3
Gourvennec, S.4
Kwapisz, M.5
Roche, V.6
Bertrand, C.7
Silvain, M.8
Legoix-Né, P.9
Loeillet, S.10
-
62
-
-
0037214318
-
Yeast Isw1p forms two separable complexes in vivo
-
Vary JC Jr, Gangaraju VK, Qin J, Landel CC, Kooperberg C, Bartholomew B, Tsukiyama T, (2003) Yeast Isw1p forms two separable complexes in vivo. Mol Cell Biol 23: 80-91
-
(2003)
Mol Cell Biol
, vol.23
, pp. 80-91
-
-
Vary, Jr.J.C.1
Gangaraju, V.K.2
Qin, J.3
Landel, C.C.4
Kooperberg, C.5
Bartholomew, B.6
Tsukiyama, T.7
-
63
-
-
6344278689
-
Characterization of the calcium-mediated response to alkaline stress in Saccharomyces cerevisiae
-
Viladevall L, Serrano R, Ruiz A, Domenech G, Giraldo J, Barcelõ A, Ariño J, (2004) Characterization of the calcium-mediated response to alkaline stress in Saccharomyces cerevisiae. J Biol Chem 279: 43614-43624
-
(2004)
J Biol Chem
, vol.279
, pp. 43614-43624
-
-
Viladevall, L.1
Serrano, R.2
Ruiz, A.3
Domenech, G.4
Giraldo, J.5
Barcelõ, A.6
Ariño, J.7
-
64
-
-
0035222942
-
Protein interaction maps for model organisms
-
Walhout AJ, Vidal M, (2001) Protein interaction maps for model organisms. Nat Rev Mol Cell Biol 2: 55-62
-
(2001)
Nat Rev Mol Cell Biol
, vol.2
, pp. 55-62
-
-
Walhout, A.J.1
Vidal, M.2
-
65
-
-
0033529707
-
Functional characterization of the S. Cerevisiae genome by gene deletion and parallel analysis
-
Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, et al, (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
-
66
-
-
0038506725
-
Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8
-
Young ET, Dombek KM, Tachibana C, Ideker T, (2003) Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8. J Biol Chem 278: 26146-26158
-
(2003)
J Biol Chem
, vol.278
, pp. 26146-26158
-
-
Young, E.T.1
Dombek, K.M.2
Tachibana, C.3
Ideker, T.4
-
67
-
-
58549084410
-
How Saccharomyces responds to nutrients
-
Zaman S, Lippman SI, Zhao X, Broach JR, (2008) How Saccharomyces responds to nutrients. Annu Rev Genet 42: 27-81
-
(2008)
Annu Rev Genet
, vol.42
, pp. 27-81
-
-
Zaman, S.1
Lippman, S.I.2
Zhao, X.3
Broach, J.R.4
-
68
-
-
0342868306
-
Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth
-
Zhu G, Spellman PT, Volpe T, Brown PO, Botstein D, Davis TN, Futcher B, (2000) Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth. Nature 406: 90-94
-
(2000)
Nature
, vol.406
, pp. 90-94
-
-
Zhu, G.1
Spellman, P.T.2
Volpe, T.3
Brown, P.O.4
Botstein, D.5
Davis, T.N.6
Futcher, B.7
|