Characterization of the calcium-mediated response to alkaline stress in Saccharomyces cerevisiae

Journal of Biological Chemistry

Volumn 279, Issue 42, 2004, Pages 43614-43624

  Viladevall, Laia ^a   Serrano, Raquel ^a,b   Ruiz, Amparo ^a,c   Domenech, Gema ^a   Giraldo, Jesús ^a   Barceló, Anna ^a   Ariño, Joaquín ^a  

^a UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^b Min de Ciencia Y Tecnología   (Spain)

^c Generalitat de Catalunya ^*  (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINE STRESSES; ALKALINIZATION; MUTANTS;

CELLS; DNA; ENZYMES; GENETIC ENGINEERING; LUMINESCENCE; MUTAGENESIS; RNA; SENSITIVITY ANALYSIS; STRESSES;

YEAST;

CALCIUM; TACROLIMUS;

ALKALINITY; ARTICLE; CALCIUM TRANSPORT; CELL MEMBRANE; DNA MICROARRAY; INHIBITION KINETICS; LUMINESCENCE; MUTATION; NONHUMAN; PRIORITY JOURNAL; STRESS;

CALCIUM; DNA PRIMERS; GENE EXPRESSION REGULATION, FUNGAL; GENOTYPE; HYDROGEN-ION CONCENTRATION; KINETICS; POLYMERASE CHAIN REACTION; RNA, FUNGAL; SACCHAROMYCES CEREVISIAE;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 6344278689     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M403606200     Document Type: Article

References (56)

1. Cyert, M. S., Kunisawa, R., Kaim, D., and Thorner, J. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 7376-7380
2. Kuno, T., Tanaka, H., Mukai, H., Chang, C. D., Hiraga, K., Miyakawa, T., and Tanaka, C. (1991) Biochem. Biophys. Res. Commun. 180, 1159-1163
3. Iida, H., Yagawa, Y., and Anraku, Y. (1990) J. Biol. Chem. 265, 13391-13399
4. Muller, E. M., Locke, E. G., and Cunningham, K. W. (2001) Genetics 159, 1527-1538
5. Nakajima-Shimada, J., Iida, H., Tsuji, F. I., and Anraku, Y. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 6878-6882
6. Birchwood, C. J., Saba, J. D., Dickson, R. C., and Cunningham, K. W. (2001) J. Biol. Chem. 276, 11712-11718
7. Batiza, A. F., Schulz, T., and Masson, P. H. (1996) J. Biol. Chem. 271, 23357-23362
8. Denis, V., and Cyert, M. S. (2002) J. Cell Biol. 156, 29-34
9. Matsumoto, T. K., Ellsmore, A. J., Cessna, S. G., Low, P. S., Pardo, J. M., Bressan, R. A., and Hasegawa, P. M. (2002) J. Biol. Chem. 277, 33075-33080
10. Stathopoulos, A. M., and Cyert, M. S. (1997) Genes Dev. 11, 3432-3444
11. Matheos, D. P., Kingsbury, T. J., Ahsan, U. S., and Cunningham, K. W. (1997) Genes Dev. 11, 3445-3458
12. Stathopoulos-Gerontides, A., Guo, J. J., and Cyert, M. S. (1999) Genes Dev. 13, 798-803
13. Yoshimoto, H., Saltsman, K., Gasch, A. P., Li, H. X., Ogawa, N., Botstein, D., Brown, P. O., and Cyert, M. S. (2002) J. Biol. Chem. 277, 31079-31088
14. Serrano, R., Ruiz, A., Bernal, D., Chambers, J. R., and Arino, J. (2002) Mol. Microbiol. 46, 1319-1333
15. Mendoza, I., Rubio, F., Rodriguez-Navarro, A., and Pardo, J. M. (1994) J. Biol. Chem. 269, 8792-8796
16. Nakamura, T., Liu, Y., Hirata, D., Namba, H., Harada, S., Hirokawa, T., and Miyakawa, T. (1993) EMBO J. 12, 4063-4071
17. Adams, A., Gottschling, D. E., Kaiser, C. A., and Stearns, T. (1997) Methods in Yeast Genetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
18. Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., Chu, A. M., Connelly, C., Davis, K., Dietrich, F., Dow, S. W., El Bakkoury, M., Foury, F., Friend, S. H., Gentalen, E., Giaever, G., Hegemann, J. H., Jones, T., Laub, M., Liao, H., and Davis, R. W. (1999) Science 285, 901-906
19. Berben, G., Dumont, J., Gilliquet, V., Bolle, P. A., and Hilger, F. (1991) Yeast 7, 475-477
20. Myers, A. M., Tzagoloff, A., Kinney, D. M., and Lusty, C. J. (1986) Gene (Amst.) 45, 299-310
21. Giaever, G., Chu, A. M., Ni, L., Connelly, C., Riles, L., Veronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., Andre, B., Arkin, A. P., Astromoff, A., El Bakkoury, M., Bangham, R., Benito, R., Brachat, S., Campanaro, S., Curtiss, M., Davis, K., Deutschbauer, A., Entian, K. D., Flaherty, P., Foury, F., Garfinkel, D. J., Gerstein, M., Gotte, D., Guldener, U., Hegemann, J. H., Hempel, S., Herman, Z., Jaramillo, D. F., Kelly, D. E., Kelly, S. L., Kotter, P., LaBonte, D., Lamb, D. C., Lan, N., Liang, H., Liao, H., Liu, L., Luo, C., Lussier, M., Mao, R., Menard, P., Ooi, S. L., Revuelta, J. L., Roberts, C. J., Rose, M., Ross-Macdonald, P., Scherens, B., Schimmack, G., Shafer, B., Shoemaker, D. D., Sookhai-Mahadeo, S., Storms, R. K., Strathern, J. N., Valle, G., Voet, M., Volckaert, G., Wang, C. Y., Ward, T. R., Wilhelmy, J., Winzeler, E. A., Yang, Y., Yen, G., Youngman, E., Yu, K., Bussey, H., Boeke, J. D., Snyder, M., Philippsen, P., Davis, R. W., and Johnston, M. (2002) Nature 418, 387-391
22. Köhrer, K., and Dombey, H. (1991) Methods Enzymol. 194, 398-405
23. Alberola, T. M., García-Martínez, J., Antúnez, O., Viladevall, L., Barceló, A., Ariño, J., and Pérez- Ortĩn, J. E. (2004) Int. Microbiol., in press
24. Hegde, P., Qi, R., Gay, C., Dharap, S., Hughes, J. E., Snesrud, E., Lee, N., and Quackenbush, J. (2000) BioTechniques 29, 548-562
25. Cui, X., and Churchill, G. A. (2003) Genome Biol. 4, 210. Epub 2003 March 17
26. Livak, K. J., and Schmittgen, T. D. (2001) Methods 25, 402-408
27. Cabiscol, E., Belli, G., Tamarit, J., Echave, P., Herrero, E., and Ros, J. (2002) J. Biol. Chem. 277, 44531-44538
28. Serrano, R., Bernal, D., Simon, E., and Arino, J. (2004) J. Biol. Chem. 279, 19698-19704
29. Issel-Tarver, L., Christie, K. R., Dolinski, K., Andrada, R., Balakrishnan, R., Ball, C. A., Binkley, G., Dong, S., Dwight, S. S., Fisk, D. G., Harris, M., Schroeder, M., Sethuraman, A., Tse, K., Weng, S., Botstein, D., and Cherry, J. M. (2002) Methods Enzymol. 350, 329-346
30. van Helden, J., Andre, B., and Collado-Vides, J. (2000) Yeast 16, 177-187
31. Hilioti, Z., and Cunningham, K. W. (2004) in Topics Current in Genetics (Arino, J., and Alexander, D. R., eds) pp. 73-90, Springer-Verlag, Heidelberg, Germany
32. Kingsbury, T. J., and Cunningham, K. W. (2000) Genes Dev. 14, 1595-1604
33. Hilioti, Z., and Cunningham, K. W. (2003) Biochem. Biophys. Res. Commun. 311, 1089-1093
34. Gorlach, J., Fox, D. S., Cutler, N. S., Cox, G. M., Perfect, J. R., and Heitman, J. (2000) EMBO J. 19, 3618-3629
35. Hilioti, Z., Gallagher, D. A., Low-Nam, S. T., Ramaswamy, P., Gajer, P., Kingsbury, T. J., Birchwood, C. J., Levchenko, A., and Cunningham, K. W. (2004) Genes Dev. 18, 35-47
36. Kafadar, K. A., Zhu, H., Snyder, M., and Cyert, M. S. (2003) Genes Dev. 17, 2698-2708
37. Mewes, H. W., Frishman, D., Gruber, C., Geier, B., Haase, D., Kaps, A., Lemcke, K., Mannhaupt, G., Pfeiffer, F., Schuller, C., Stocker, S., and Weil, B. (2000) Nucleic Acids Res. 28, 37-40
38. Halachmi, D., and Eilam, Y. (1989) FEBS Lett. 256, 55-61
39. Strayle, J., Pozzan, T., and Rudolph, H. K. (1999) EMBO J. 18, 4733-4743
40. Paidhungat, M., and Garrett, S. (1997) Mol. Cell. Biol. 17, 6339-6347
41. Fischer, M., Schnell, N., Chattaway, J., Davies, P., Dixon, G., and Sanders, D. (1997) FEBS Lett. 419, 259-262
42. Locke, E. G., Bonilla, M., Liang, L., Takita, Y., and Cunningham, K. W. (2000) Mol. Cell. Biol. 20, 6686-6694
43. Courchesne, W. E., and Ozturk, S. (2003) Mol. Microbiol. 47, 223-234
44. Muller, E. M., Mackin, N. A., Erdman, S. E., and Cunningham, K. W. (2003) J. Biol. Chem. 278, 38461-38469
45. Bonilla, M., and Cunningham, K. W. (2003) Mol. Biol. Cell 14, 4296-4305
46. Lamb, T. M., Xu, W., Diamond, A., and Mitchell, A. P. (2001) J. Biol. Chem. 276, 1850-1856
47. Lamb, T. M., and Mitchell, A. P. (2003) Mol. Cell. Biol. 23, 677-686
48. Parsons, A. B., Brost, R. L., Ding, H., Li, Z., Zhang, C., Sheikh, B., Brown, G. W., Kane, P. M., Hughes, T. R., and Boone, C. (2004) Nat. Biotechnol. 22, 62-69
49. Causton, H. C., Ren, B., Koh, S. S., Harbison, C. T., Kanin, E., Jennings, E. G., Lee, T. I., True, H. L., Lander, E. S., and Young, R. A. (2001) Mol. Biol. Cell 12, 323-337
50. Rodrigues-Pousada, C. A., Nevitt, T., Menezes, R., Azevedo, D., Pereira, J., and Amaral, C. (2004) FEBS Lett. 567, 80-85
51. Monteiro, G., Pereira, G. A., and Netto, L. E. (2002) Free Radic. Biol. Med. 32, 278-288
52. Lagorce, A., Hauser, N. C., Labourdette, D., Rodriguez, C., Martin-Yken, H., Arroyo, J., Hoheisel, J. D., and Francois, J. (2003) J. Biol. Chem. 278, 20345-20357
53. Garcia, R., Bermejo, C., Grau, C., Perez, R., Rodriguez-Pena, J. M., Francois, J., Nombela, C., and Arroyo, J. (2004) J. Biol. Chem. 279, 15183-15195
54. Ezaki, B., Gardner, R. C., Ezaki, Y., Kondo, H., and Matsumoto, H. (1998) FEMS Microbiol. Lett. 159, 99-105
55. Kapteyn, J. C., ter Riet, B., Vink, E., Blad, S., De Nobel, H., Van Den, E. H., and Klis, F. M. (2001) Mol. Microbiol. 39, 469-479
56. de Nadal, E., Clotet, J., Posas, F., Serrano, R., Gomez, N., and Arino, J. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 7357-7362