Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Schellenberg, John J ^a   Verbeke, Tobin J ^a   McQueen, Peter ^b   Krokhin, Oleg V ^b   Zhang, Xiangli ^a   Alvare, Graham ^a   Fristensky, Brian ^a   Thallinger, Gerhard G ^c,d   Henrissat, Bernard ^e,f   Wilkins, John A ^b   Levin, David B ^a   Sparling, Richard ^a  

^a UNIVERSITY OF MANITOBA   (Canada)

^b UNIVERSITY OF MANITOBA   (Canada)

^c AUSTRIAN CENTRE OF INDUSTRIAL BIOTECHNOLOGY   (Austria)

^d GRAZ UNIVERSITY OF TECHNOLOGY   (Austria)

^e AIX MARSEILLE UNIVERSITY   (France)

^f CNRS   (France)

Author keywords

Genome; Glycolysis; Pentose phosphate pathway; Proteogenomics; Proteome; RNA seq; Tandem mass spectrometry; Transaldolase; Transcriptome

Indexed keywords

HEMICELLULOSE; PENTOSE PHOSPHATE; PHOSPHATE; PYRUVIC ACID; SEDOHEPTULOSE 7 PHOSPHATE; TRANSALDOLASE; TRYPSIN; UNCLASSIFIED DRUG; XYLAN; XYLOSE; BACTERIAL PROTEIN; TRANSCRIPTOME;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; BACTERIAL METABOLISM; BACTERIAL STRAIN; CARBOHYDRATE TRANSPORT; CLOSTRIDIUM; CLOSTRIDIUM STERCORARIUM; COMPUTER MODEL; CONTROLLED STUDY; GENE SEQUENCE; GENETIC ALGORITHM; GLYCOLYSIS; HIGH THROUGHPUT SEQUENCING; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPTIDE MAPPING; PROTEOMICS; PSEUDOGENE; REPLICON; RNA SEQUENCE; SEQUENCE ANALYSIS; TANDEM MASS SPECTROMETRY; TRANSCRIPTOMICS; WHOLE GENOME SEQUENCE; CARBOHYDRATE METABOLISM; GENE EXPRESSION PROFILING; GENETICS; METABOLISM; MOLECULAR GENETICS;

BACTERIAL PROTEINS; CARBOHYDRATE METABOLISM; CLOSTRIDIUM; GENE EXPRESSION PROFILING; GENOME, BACTERIAL; MOLECULAR SEQUENCE ANNOTATION; PROTEOMICS; PSEUDOGENES; SEQUENCE ANALYSIS, RNA; TANDEM MASS SPECTROMETRY; TRANSCRIPTOME;

EID: 84903680404     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-567     Document Type: Article

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