Origin of replication in circular prokaryotic chromosomes

Environmental Microbiology

Volumn 8, Issue 2, 2006, Pages 353-361

  Worning, Peder ^a,c   Jensen, Lars J ^b,c   Hallin, Peter F ^c   Stærfeldt, Hans Henrik ^c   Ussery, David W ^c  

^a ASTRAZENECA R AND D   (Sweden)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); PROKARYOTA;

CIRCULAR DNA;

ARCHAEBACTERIUM; ARTICLE; BACTERIAL CHROMOSOME; BACTERIUM; CHROMOSOME; DNA REPLICATION; DNA REPLICATION ORIGIN; GENETICS; PHYLOGENY;

ARCHAEA; BACTERIA; CHROMOSOMES, ARCHAEAL; CHROMOSOMES, BACTERIAL; DNA REPLICATION; DNA, CIRCULAR; PHYLOGENY; REPLICATION ORIGIN;

EID: 33644853927     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2005.00917.x     Document Type: Article

References (37)

1. Baker T. 1995 Replication arrest Cell 80 521 524
2. Berquist BR. DasSarma S. 2003 An archaeal chromosomal autonomously replicating sequence element from an extreme halophile, Halobacterium sp. strain NRC-1 J Bacteriol 185 5959 5966
3. Brüggemann H. Bäumer S. Fricke WF. Wiezer A. Liesegang H. Decker I. et al. 2003 The genome sequence of Clostridium tetani, the causative agent of tetanus disease Proc Natl Acad Sci USA 100 1316 1321
4. le Chatelier E. Bécherel OJ. d'Alençon E. Canceill E. Ehrlich SD. Fuchs RP. Jannière L. 2004 Involvement of DnaE, the second replicative DNA polymerase from Bacillus subtilis, in DNA mutagenesis J Biol Chem 279 1757 1767
5. Claverys J-P. Granadel C. Berry AM. Paton JC. 1999 Identification of putative chromosomal origins of replication in Archaea Mol Microbiol 32 883 886
6. Deng W. Burland V. Plunkett G., III, Boutin A. Mayhew GF. Liss P. et al. 2002 Genome sequence of Yersinia pestis KIM J Bacteriol 184 4601 4611
7. Denniston-Thompson K. Moore DD. Kruger KE. Furth ME. Blattner FR. 1977 Physical structure of the replication origin of bacteriophage lambda Science 198 1051 1056
8. Dervyn E. Suski C. Daniel R. Gruand C. Chapuis J. Errington J. et al. 2001 Two essential DNA polymerases at the bacterial replication fork Science 294 1716 1719
9. Eisen JA. Heidelberg JF. White O. Salzberg SL. 2000 Evidence for symmetric chromosomal inversions around the replication origin in Bacteria Genome Biol 1 1 9
10. Frank AC. Lobry JR. 2000 Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes Bioinformatics 16 560 561
11. Freeman JM. Plasterer TN. Smith TF. Mohr SC. 1998 Patterns of genome organization in Bacteria Science 279 1827a
12. Huang YP. Ito J. 1998 The hyperthermophilic bacterium Thermotoga maritima has two different classes of family c dna polymerases: evolutionary implications Nucleic Acids Res 26 5300 5309
13. Kapatral V. Anderson I. Ivanova N. Reznik G. Los T. Lykidis A. et al. 2002 Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586 J Bacteriol 184 2005 2018
14. Khan SA. 2000 Plasmid rolling-circle replication: recent developments Mol Microbiol 37 477 484
15. Kornberg A. Baker T. 1992 DNA Replication 2nd edn New York, USA Freeman.
16. Lobry JR. 1996a Asymmetric substitution patterns in the two DNA strands of bacteria Mol Biol Evol 13 660 665
17. Lobry JR. 1996b Origin of replication of Mycoplasma genitalium Science 272 745 746
18. Lopez P. Hervé P. Myllykllio H. Forterre P. 1999 Identification of putative chromosomal origins of replication in archaea Mol Microbiol 32 883 886
19. Lopez P. Forterre P. le Guyader H. Philippe H. 2000 Origin of replication of Thermotoga maritima Trends Genet 16 59 60
20. McHenry C. 2003 Chromosomal replicases as asymmetric dimers: studies of subunit arrangement and functional consequences Mol Microbiol 49 1157 1165
21. Maisnier-Patin S. Malandrin L. Birkeland N-K. Bernander R. 2002 Chromosome replication patterns in the hyperthermophilic euryarchaea Archaeoglobus fulgidus and Methanocaldococcus (Methanococcus) jannaschii Mol Microbiol 45 1443 1450
22. Myllykallio H. Lopez P. Lopez-Garcia P. Heilig R. Saurin W. Zivanovic Y. et al. 2000 Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon Science 288 2212 2215
23. Parkhill J. Wren BW. Thomson NR. Titball RW. Holden MT. Prentice MB. et al. 2001 Genome sequence of Yersinia pestis, the causitive agent of plague Nature 413 523 527
24. Richter S. Hagemann M. Messer W. 1998 Transcriptional analysis and mutation of a dnaA-like gene in Synechocyctis sp. strain PCC 6803 J Syst Bacteriol 180 4946 4949
25. Robinson NP. Dionne I. Lundgren M. Marsh VL. Bernander R. Bell SD. 2004 Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus Cell 116 25 38
26. Rocha EPC. 2000 Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes? Trends Microbiol 10 393 395
27. Rocha EPC. 2004 The replication-related organization of bacterial genomes Microbiology 150 1609 1627
28. Rocha E. Dancin A. 2001 Ongoing evolution of strand composition in bacterial genomes Mol Biol Evol 18 1789 1799
29. Salzberg SL. Salzberg AJ. Kerlavage AR. Tomb J-F. 1998 Skewed oligomers and the origin of replication Gene 217 57 67
30. Seto S. Miyata M. 1998 Cell reproduction and morphological changes in Mycoplasma capricolum Mol Microbiol 180 256 264
31. Shimizu T. Ohtani K. Hirakawa H. Ohshima K. Yamashita A. Shiba T. et al. 2002 Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater Proc Natl Acad Sci USA 99 996 1001
32. Song Y. Tong Z. Wang J. Wang L. Guo Z. Han Y. et al. 2004 Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans DNA Res 11 179 197
33. Tillier ERM. Collins RA. 2000 Genome rearrangement by replication directed translocation Nat Genet 26 195 197
34. Xu J. Bjursell MK. Himrod J. Deng S. Carmichael LK. Chiang HC. et al. 2003 A genomic view of the human-Bacteroides thetaiotaomicron symbiosis Science 299 2074 2076
35. Yuzhakov A. Turner J. O'Donnell M. 1996 Replisome assembly reveals the basis for asymmetric function in leading and lagging strand replication Cell 86 877 886
36. Zhang R. Zhang C-T. 2002 Single replication origin of the archaeon Methanosarcina mazei revealed by the Z curve method Biochem Biophys Res Comm 297 396 400
37. Zhang R. Zhang C-T. 2003 Multible replication origins of the archaeon Halobacterium species NRC-1 Biochem Biophys Res Comm 302 728 734