Complete genome sequence of Clostridium stercorarium subsp. stercorarium strain DSM 8532, a thermophilic degrader of plant cell wall fibers

Genome Announcements

Volumn 1, Issue 2, 2013, Pages

  Poehlein, Anja ^a   Zverlov, Vladimir V ^b,c   Daniel, Rolf ^a   Schwarz, Wolfgang H ^b   Liebl, Wolfgang ^b  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^c INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84923336294     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00073-13     Document Type: Article

References (22)

1. Fardeau ML, Ollivier B, Garcia JL, Patel BKC. 2001. Transfer of Thermobacteroides leptospartum and Clostridium thermolacticum as Clostridium stercorarium subsp. leptospartum subsp. thermolacticum subsp. nov., comb. nov. and C. stercorarium subsp. thermolacticum subsp. nov., comb. nov. Int. J. Syst Evol. Microbiol. 51:1127-1131.
2. Le Ruyet P, Dubourguier HC, Albagnac G, Prensier G. 1985. Characterization of Clostridium thermolacticum sp. nov., a hydrolytic thermophilic anaerobe producing high amounts of lactate. Syst. Appl. Microbiol. 6:196-202.
3. Toda Y, Saiki T, Uozumi T, Beppu T. 1988. Isolation and characterization of a protease-producing, thermophilic, anaerobic bacterium, Thermobacteroides leptospartum sp. Agric. Biol. Chem. 52:1339-1344.
4. Collins MD, Lawson PA, Willems A, Cordoba JJ, Fernandez-Garayzabal J, Garcia P, Cai J, Hippe H, Farrow JAE. 1994. The phylogeny of the genus clostridium: proposal of five new genera and eleven new species combinations. Int. J. Syst. Bacteriol. 44:812-826.
5. Ludwig W, Schleifer K-H, Whitman WB. 2009. Revised road map to the phylum Firmicutes, p 1-13. In De Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, WhitmanWB(ed), Bergey's manual of systematic bacteriology, the Firmicutes, 2nd ed, vol 3. Springer-Verlag, New York, NY.
6. Riedel K, Ritter J, Bronnenmeier K. 1997. Synergistic interaction of the Clostridium stercorarium cellulases Avicelase I (CelZ) and Avicelase II (CelY) in the degradation of microcrystalline cellulose. FEMS Microbiol. Lett. 147:239-243.
7. Zverlov VV, Hiegl W, Köck DE, Kellermann J, Köllmeier T, Schwarz WH. 2010. Hydrolytic bacteria in mesophilic and thermophilic degradation of plant biomass. Eng. Life Sci. 10:528-536.
8. Zverlov VV, Schwarz WH. 2008. Bacterial hydrolysis in anaerobic environmental subsystems-Clostridium thermocellum and Clostridium stercorarium, thermophilic plant-fiber degraders. Ann. N. Y. Acad. Sci. 1125: 298-307.
9. Donaghy JA, Bronnenmeier K, Soto-Kelly PF, McKay AM. 2000. Purification and characterization of an extracellular feruloyl esterase from the thermophilic anaerobe Clostridium stercorarium. J. Appl. Microbiol. 88: 458-466.
10. Zverlov VV, Liebl W, Bachleitner M, Schwarz WH. 1998. Nucleotide sequence of arfB of Clostridium stercorarium, and prediction of catalytic residues of alfa-L-arabinofuranosidases based on local similarity with several families of glycosyl hydrolases. FEMS Microbiol. Lett. 164:337-343.
11. Zverlov VV, Hertel C, Bronnenmeier K, Hroch A, Kellermann J, Schwarz WH. 2000. The thermostable alpha-L-rhamnosidase RamA of Clostridium stercorarium: biochemical characterization and primary structure of a bacterial alfa-L-rhamnoside hydrolase, a new type of inverting glycosyl hydrolase. Mol. Microbiol. 35:173-179.
12. Sakka K, Kojima Y, Yoshikawa K, Shimada K. 1990. Cloning and expression in Escherichia coli of Clostridium stercorarium strain F9 genes related to xylan hydrolysis. Agric. Biol. Chem. 54:337-342.
13. Adelsberger H, Hertel C, Glawischnig E, Zverlov VV, Schwarz WH. 2004. Enzyme system of Clostridium stercorarium for hydrolysis of arabinoxylan: reconstitution of the in vivo system from recombinant enzymes. Microbiology 150:2257-2266.
14. Kaur A, Singh S, Singh RS, Schwarz WH, Puri M. 2010. Hydrolysis of citrus peel naringin by recombinant alpha-L-rhamnosidase from Clostridium stercorarium. J. Chem. Technol. Biotechnol. 85:1419-1422.
15. Schwarz WH, Bronnenmeier K, Landmann B, Wanner G, Staudenbauer WL, Kurose N, Takayama T. 1995. Molecular characterization of four strains of the cellulolytic thermophile Clostridium stercorarium. Biosci. Biotechnol. Biochem. 9:1661-1665.
16. Chevreux B, Wetter T, Suhai S. 1999. Genome sequence assembly using trace signals and additional sequence information. Computer Science and Biology Proceedings of the German Conference on Bioinformatics GCB (1999) 99:45-56.
17. Markowitz VM, Mavromatis K, Ivanova NN, Chen IM, Chu K, Kyrpides NC. 2009. IMG er: a system for microbial genome annotation expert review and curation. Bioinformatics 25:2271-2278.
18. Zdobnov EM, Apweiler R. 2001. InterProScan-an integration platform for the signature recognition methods in interpro. Bioinformatics 17: 847-848.
19. Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
20. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
21. Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, van der Oost J, Koonin EV. 2011. Evolution and classification of the CRISPR-Cas systems. Nat. Rev. Microbiol. 9:467-477.
22. Madden H. 1983. Isolation and characterization of Clostridium stercorarium sp. nov., cellulolytic thermophile. Int. J. Syst. Bacteriol. 33: 837-840.