-
1
-
-
9144253940
-
Arabidopsis kinome: after the casting
-
Champion A, Kreis M, Mockaitis K, Picaud A, Henry Y. Arabidopsis kinome: after the casting. Funct Integr Genomics 2004, 4:163-187.
-
(2004)
Funct Integr Genomics
, vol.4
, pp. 163-187
-
-
Champion, A.1
Kreis, M.2
Mockaitis, K.3
Picaud, A.4
Henry, Y.5
-
2
-
-
0038460040
-
Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis
-
10.1104/pp.103.021964, 166995, 12805585
-
Shiu S-H, Bleecker AB. Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis. Plant Physiol 2003, 132:530-543. 10.1104/pp.103.021964, 166995, 12805585.
-
(2003)
Plant Physiol
, vol.132
, pp. 530-543
-
-
Shiu, S.-H.1
Bleecker, A.B.2
-
3
-
-
84856325445
-
Selection-driven divergence after gene duplication in Arabidopsis thaliana
-
10.1007/s00239-011-9463-2, 21965041
-
Gossmann TI, Schmid KJ. Selection-driven divergence after gene duplication in Arabidopsis thaliana. J Mol Evol 2011, 73:153-165. 10.1007/s00239-011-9463-2, 21965041.
-
(2011)
J Mol Evol
, vol.73
, pp. 153-165
-
-
Gossmann, T.I.1
Schmid, K.J.2
-
4
-
-
84861010134
-
Genome and gene duplications and gene expression divergence: a view from plants
-
Wang Y, Wang X, Paterson AH. Genome and gene duplications and gene expression divergence: a view from plants. Ann N Y Acad Sci 2012, 1256(1-14).
-
(2012)
Ann N Y Acad Sci
, vol.1256
, Issue.1-14
-
-
Wang, Y.1
Wang, X.2
Paterson, A.H.3
-
5
-
-
57149089296
-
Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with Rosids
-
10.1104/pp.108.124867, 2593677, 18952863
-
Lyons E, Pedersen B, Kane P, Alam M, Ming R, Tang H, Wang X, Bowers J, Paterson A, Lisch D, Freeling M. Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with Rosids. Plant Physiol 2008, 148:1772-1781. 10.1104/pp.108.124867, 2593677, 18952863.
-
(2008)
Plant Physiol
, vol.148
, pp. 1772-1781
-
-
Lyons, E.1
Pedersen, B.2
Kane, P.3
Alam, M.4
Ming, R.5
Tang, H.6
Wang, X.7
Bowers, J.8
Paterson, A.9
Lisch, D.10
Freeling, M.11
-
6
-
-
84856480832
-
Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the Rosids
-
10.1105/tpc.111.093567, 3269863, 22180627
-
Woodhouse MR, Tang H, Freeling M. Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the Rosids. Plant Cell 2011, 23:4241-4253. 10.1105/tpc.111.093567, 3269863, 22180627.
-
(2011)
Plant Cell
, vol.23
, pp. 4241-4253
-
-
Woodhouse, M.R.1
Tang, H.2
Freeling, M.3
-
7
-
-
84860137835
-
MCScanX: a toolkit for detection and evolutionary analysis of gene syteny and collinearity
-
10.1093/nar/gkr1293, 3326336, 22217600
-
Wang Y, Tang H, DeBarry JD, Tan X, Li J, Wang X, Lee T, Jin H, Marler B, Guo H, Kissinger JC, Paterson A. MCScanX: a toolkit for detection and evolutionary analysis of gene syteny and collinearity. Nucleic Acids Res 2012, 40(7):e49. 10.1093/nar/gkr1293, 3326336, 22217600.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.7
-
-
Wang, Y.1
Tang, H.2
DeBarry, J.D.3
Tan, X.4
Li, J.5
Wang, X.6
Lee, T.7
Jin, H.8
Marler, B.9
Guo, H.10
Kissinger, J.C.11
Paterson, A.12
-
8
-
-
67651039811
-
Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental or by transposition
-
10.1146/annurev.arplant.043008.092122, 19575588
-
Freeling M. Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental or by transposition. Annu Rev Plant Biol 2009, 60:433-453. 10.1146/annurev.arplant.043008.092122, 19575588.
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 433-453
-
-
Freeling, M.1
-
9
-
-
2942620598
-
The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
-
10.1186/1471-2229-4-10, 446195, 15171794
-
Cannon SB, Mitra A, Baumgarten A, Young ND, May G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 2004, 4:10. 10.1186/1471-2229-4-10, 446195, 15171794.
-
(2004)
BMC Plant Biol
, vol.4
, pp. 10
-
-
Cannon, S.B.1
Mitra, A.2
Baumgarten, A.3
Young, N.D.4
May, G.5
-
10
-
-
70549110074
-
The flowering world: a tale of duplications
-
10.1016/j.tplants.2009.09.001, 19818673
-
Van de Peer Y, Fawcett JA, Proost S, Sterck L, Vandepoele K. The flowering world: a tale of duplications. Trends Plant Sci 2009, 14(12):680-688. 10.1016/j.tplants.2009.09.001, 19818673.
-
(2009)
Trends Plant Sci
, vol.14
, Issue.12
, pp. 680-688
-
-
Van de Peer, Y.1
Fawcett, J.A.2
Proost, S.3
Sterck, L.4
Vandepoele, K.5
-
11
-
-
0141678039
-
Genome-level evolution of resistance genes in Arabidopsis thaliana
-
1462749, 14504238
-
Baumgarten A, Cannon S, Spangler R, May G. Genome-level evolution of resistance genes in Arabidopsis thaliana. Genetics 2003, 165:309-319. 1462749, 14504238.
-
(2003)
Genetics
, vol.165
, pp. 309-319
-
-
Baumgarten, A.1
Cannon, S.2
Spangler, R.3
May, G.4
-
12
-
-
80055082271
-
Accelerated Profile HMM Searches
-
10.1371/journal.pcbi.1002195, 3197634, 22039361
-
Eddy SR. Accelerated Profile HMM Searches. PLoS Comput Biol 2011, 7(10):e1002195. 10.1371/journal.pcbi.1002195, 3197634, 22039361.
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.10
-
-
Eddy, S.R.1
-
13
-
-
43249090276
-
Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
-
Hartmann S, Vision TJ. Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?. BMC Evol Biol 2008, 26(8):95.
-
(2008)
BMC Evol Biol
, vol.26
, Issue.8
, pp. 95
-
-
Hartmann, S.1
Vision, T.J.2
-
14
-
-
14644397888
-
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
-
10.1093/bioinformatics/bti191, 15608047
-
Stamatakis A, Ludwig T, Meier H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 2005, 21(4):456-463. 10.1093/bioinformatics/bti191, 15608047.
-
(2005)
Bioinformatics
, vol.21
, Issue.4
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
15
-
-
84876517560
-
PhosPhAt goes kinases - Searchable protein kinase target information in the plant phosphorylation site database PhosPhAt
-
10.1093/nar/gks1081, 3531128, 23172287
-
Zulawski M, Braginets R, Schulze WX. PhosPhAt goes kinases - Searchable protein kinase target information in the plant phosphorylation site database PhosPhAt. Nucleic Acids Res 2013, 41(D1):D1176-D1184. 10.1093/nar/gks1081, 3531128, 23172287.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.D1
-
-
Zulawski, M.1
Braginets, R.2
Schulze, W.X.3
-
16
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
10.1038/ng.807, 3083492, 21478890
-
Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagel M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KF, van de Peer Y, Grigoriev IV, Nordborg M, Weigel D, Guo YL. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet 2011, 43(5):476-481. 10.1038/ng.807, 3083492, 21478890.
-
(2011)
Nat Genet
, vol.43
, Issue.5
, pp. 476-481
-
-
Hu, T.T.1
Pattyn, P.2
Bakker, E.G.3
Cao, J.4
Cheng, J.F.5
Clark, R.M.6
Fahlgren, N.7
Fawcett, J.A.8
Grimwood, J.9
Gundlach, H.10
Haberer, G.11
Hollister, J.D.12
Ossowski, S.13
Ottilar, R.P.14
Salamov, A.A.15
Schneeberger, K.16
Spannagel, M.17
Wang, X.18
Yang, L.19
Nasrallah, M.E.20
Bergelson, J.21
Carrington, J.C.22
Gaut, B.S.23
Schmutz, J.24
Mayer, K.F.25
van de Peer, Y.26
Grigoriev, I.V.27
Nordborg, M.28
Weigel, D.29
Guo, Y.L.30
more..
-
17
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
10.1126/science.1128691, 16973872
-
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Buscov V, Campbell M, Carson J, Chalot M, Chapman J, Chen GL, Cooper D, Couthino PM, Couturier J, Covert S, Cronk Q, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 2006, 313(5793):1596-1604. 10.1126/science.1128691, 16973872.
-
(2006)
Science
, vol.313
, Issue.5793
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
Schein, J.11
Sterck, L.12
Aerts, A.13
Bhalerao, R.R.14
Bhalerao, R.P.15
Blaudez, D.16
Boerjan, W.17
Brun, A.18
Brunner, A.19
Buscov, V.20
Campbell, M.21
Carson, J.22
Chalot, M.23
Chapman, J.24
Chen, G.L.25
Cooper, D.26
Couthino, P.M.27
Couturier, J.28
Covert, S.29
Cronk, Q.30
more..
-
18
-
-
2942610254
-
DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
-
10.1186/gb-2003-4-10-r68, 328457, 14519203
-
Cannon SB, Kozik A, Chan B, Michelmore R, Young ND. DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization. Genome Biol 2003, 4(10):R68. 10.1186/gb-2003-4-10-r68, 328457, 14519203.
-
(2003)
Genome Biol
, vol.4
, Issue.10
-
-
Cannon, S.B.1
Kozik, A.2
Chan, B.3
Michelmore, R.4
Young, N.D.5
-
19
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Royal Stat Soc 1995, 57:289-300.
-
(1995)
J Royal Stat Soc
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
20
-
-
1042304216
-
APE: Analyses of Phylogenetics and Evolution in R language
-
10.1093/bioinformatics/btg412, 14734327
-
Paradis E, Claude J, Strimmer K. APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 2004, 20(2):289-290. 10.1093/bioinformatics/btg412, 14734327.
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
21
-
-
79951548848
-
Phangorn: phylogenetic analysis in R
-
10.1093/bioinformatics/btq706, 3035803, 21169378
-
Schliep KP. phangorn: phylogenetic analysis in R. Bioinformatics 2011, 27(4):592-593. 10.1093/bioinformatics/btq706, 3035803, 21169378.
-
(2011)
Bioinformatics
, vol.27
, Issue.4
, pp. 592-593
-
-
Schliep, K.P.1
-
22
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
10.1101/gr.1239303, 403769, 14597658
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13(11):2498-2504. 10.1101/gr.1239303, 403769, 14597658.
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
23
-
-
84876544295
-
SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis
-
10.1093/nar/gks1151, 3531127, 23180787
-
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I, Millar HA. SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res 2013, 41:D1185-D1191. 10.1093/nar/gks1151, 3531127, 23180787.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Tanz, S.K.1
Castleden, I.2
Hooper, C.M.3
Vacher, M.4
Small, I.5
Millar, H.A.6
-
24
-
-
84857950845
-
A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis
-
10.1104/pp.111.192393, 3291275, 22247268
-
Lloyd J, Meinke D. A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis. Plant Physiol 2012, 158(3):1115-1129. 10.1104/pp.111.192393, 3291275, 22247268.
-
(2012)
Plant Physiol
, vol.158
, Issue.3
, pp. 1115-1129
-
-
Lloyd, J.1
Meinke, D.2
-
25
-
-
84857780876
-
Evidence for network evolution in an Arabidopsis interactome map
-
3170756, 21798944, Arabidopsis Interactome Mapping Consortium T
-
Arabidopsis Interactome Mapping Consortium T Evidence for network evolution in an Arabidopsis interactome map. Science 2011, 333(6042):601-607. 3170756, 21798944, Arabidopsis Interactome Mapping Consortium T.
-
(2011)
Science
, vol.333
, Issue.6042
, pp. 601-607
-
-
-
26
-
-
9144256852
-
Predicting N-terminal myristoylation sites in plant proteins
-
10.1186/1471-2164-5-37, 449705, 15202951
-
Podell S, Gribskow M. Predicting N-terminal myristoylation sites in plant proteins. BMC Genomics 2004, 5(1):37. 10.1186/1471-2164-5-37, 449705, 15202951.
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 37
-
-
Podell, S.1
Gribskow, M.2
-
27
-
-
75549090366
-
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
-
10.1093/nar/gkp810, 2808987, 19880383
-
Durek P, Schmidt R, Heazlewood JL, Jones A, MacLean D, Nagel A, Kersten B, Schulze WX. PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res 2010, 38:D828-D834. 10.1093/nar/gkp810, 2808987, 19880383.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Durek, P.1
Schmidt, R.2
Heazlewood, J.L.3
Jones, A.4
MacLean, D.5
Nagel, A.6
Kersten, B.7
Schulze, W.X.8
-
28
-
-
12144291195
-
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
10.1111/j.1365-313X.2004.02016.x, 14996223
-
Thimm O, Bläsing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 2004, 37(6):914-939. 10.1111/j.1365-313X.2004.02016.x, 14996223.
-
(2004)
Plant J
, vol.37
, Issue.6
, pp. 914-939
-
-
Thimm, O.1
Bläsing, O.2
Gibon, Y.3
Nagel, A.4
Meyer, S.5
Kruger, P.6
Selbig, J.7
Muller, L.A.8
Rhee, S.Y.9
Stitt, M.10
-
29
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
-
D1009-1014
-
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E. The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res 2008, 36(D1009-1014).
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
Foerster, H.6
Li, D.7
Meyer, T.8
Muller, R.9
Ploetz, L.10
Radenbaugh, A.11
Singh, S.12
Swing, V.13
Tissier, C.14
Zhang, P.15
Huala, E.16
-
30
-
-
84865603916
-
ABC1K atypical kinases in plants: filling the organellar kinase void
-
10.1016/j.tplants.2012.05.010, 3926664, 22694836
-
Lundquist PK, Davis JI, Van Wijk KJ. ABC1K atypical kinases in plants: filling the organellar kinase void. Trends Plant Sci 2012, 17(9):546-555. 10.1016/j.tplants.2012.05.010, 3926664, 22694836.
-
(2012)
Trends Plant Sci
, vol.17
, Issue.9
, pp. 546-555
-
-
Lundquist, P.K.1
Davis, J.I.2
Van Wijk, K.J.3
-
31
-
-
77952742019
-
A quantitative mass spectrometry-based approach for identifying protein kinase-clients and quantifying kinase activity
-
10.1016/j.ab.2010.03.028, 20346904
-
Huang Y, Houston NL, Tovar-Mendez A, Stevenson SE, Miernyk JA, Randall DD, Thelen JJ. A quantitative mass spectrometry-based approach for identifying protein kinase-clients and quantifying kinase activity. Anal Biochem 2010, 402(1):69-76. 10.1016/j.ab.2010.03.028, 20346904.
-
(2010)
Anal Biochem
, vol.402
, Issue.1
, pp. 69-76
-
-
Huang, Y.1
Houston, N.L.2
Tovar-Mendez, A.3
Stevenson, S.E.4
Miernyk, J.A.5
Randall, D.D.6
Thelen, J.J.7
-
32
-
-
4644309634
-
Plant two-component systems: principles, functions, complexity and cross talk
-
Grefen C, Harter K. Plant two-component systems: principles, functions, complexity and cross talk. Planta 2004, 219(5):733-742.
-
(2004)
Planta
, vol.219
, Issue.5
, pp. 733-742
-
-
Grefen, C.1
Harter, K.2
-
33
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
10.1038/35048692, 11130711, Arabidopsis Genome Initiative T
-
Arabidopsis Genome Initiative T Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-816. 10.1038/35048692, 11130711, Arabidopsis Genome Initiative T.
-
(2000)
Nature
, vol.408
, pp. 796-816
-
-
-
34
-
-
48149106793
-
Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes
-
10.1042/BJ20080625, 18570633
-
Colcombet J, Hirt H. Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes. Biochem J 2008, 413:217-226. 10.1042/BJ20080625, 18570633.
-
(2008)
Biochem J
, vol.413
, pp. 217-226
-
-
Colcombet, J.1
Hirt, H.2
-
35
-
-
84905046288
-
Reassessing the MAP3K and MAP4K relationships
-
Champion A, Picaud A, Henry Y. Reassessing the MAP3K and MAP4K relationships. Trends Plant Sci 2004, 7:301-308.
-
(2004)
Trends Plant Sci
, vol.7
, pp. 301-308
-
-
Champion, A.1
Picaud, A.2
Henry, Y.3
-
36
-
-
33744950251
-
Activation of Arabidopsis MAPK kinase kinase (AtMEKK1) and induction of AtMEKK1-AtMEK1 pathway by wounding
-
10.1007/s00425-005-0126-7, 16211390
-
Hadiarto T, Nanmori T, Matsuoka D, Iwasaki T, Sato K, Fukami Y, Azuma T, Yasuda T. Activation of Arabidopsis MAPK kinase kinase (AtMEKK1) and induction of AtMEKK1-AtMEK1 pathway by wounding. Planta 2006, 223(4):708-713. 10.1007/s00425-005-0126-7, 16211390.
-
(2006)
Planta
, vol.223
, Issue.4
, pp. 708-713
-
-
Hadiarto, T.1
Nanmori, T.2
Matsuoka, D.3
Iwasaki, T.4
Sato, K.5
Fukami, Y.6
Azuma, T.7
Yasuda, T.8
-
37
-
-
34848892123
-
Arabidopsis MEKK1 can take a short cut: it can directly interact with senescence-related WRKY53 transcription factor on the protein level and can bind to its promoter
-
Miao Y, Laun TM, Smykowski A, Zentgraf U. Arabidopsis MEKK1 can take a short cut: it can directly interact with senescence-related WRKY53 transcription factor on the protein level and can bind to its promoter. Plant Mol Biol 2007, 65(1-2):63-76.
-
(2007)
Plant Mol Biol
, vol.65
, Issue.1-2
, pp. 63-76
-
-
Miao, Y.1
Laun, T.M.2
Smykowski, A.3
Zentgraf, U.4
-
38
-
-
82355169008
-
A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake
-
in press, 10.1111/j.1365-313X.2011.04739.x, 21838775
-
Wingenter K, Trentmann O, Winschuh I, Hörmiller II, Heyer AG, Reinders J, Schulz A, Geiger D, Hedrich R, Neuhaus HE. A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake. Plant J 2011, 68(5):890-900. in press, 10.1111/j.1365-313X.2011.04739.x, 21838775.
-
(2011)
Plant J
, vol.68
, Issue.5
, pp. 890-900
-
-
Wingenter, K.1
Trentmann, O.2
Winschuh, I.3
Hörmiller, I.I.4
Heyer, A.G.5
Reinders, J.6
Schulz, A.7
Geiger, D.8
Hedrich, R.9
Neuhaus, H.E.10
-
39
-
-
0037266972
-
Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis
-
10.1046/j.1365-313X.2003.01620.x, 12535337
-
Huang Y, Li H, Hutchison CE, Laskey J, Kieber JJ. Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis. Plant J 2003, 33(2):221-233. 10.1046/j.1365-313X.2003.01620.x, 12535337.
-
(2003)
Plant J
, vol.33
, Issue.2
, pp. 221-233
-
-
Huang, Y.1
Li, H.2
Hutchison, C.E.3
Laskey, J.4
Kieber, J.J.5
-
40
-
-
0038377588
-
The Arabidopsis CDPK-SnRK superfamily of protein kinases
-
10.1104/pp.102.011999, 167006, 12805596
-
Hrabak EM, Chan CW, Gribskov M, Harper JF, Choi JH, Halford N, Kudla J, Luan S, Nimmo HG, Sussman MR, Thomas M, Walker-Simmons K, Zhu JK, Harmon AC. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol 2003, 132(2):666-680. 10.1104/pp.102.011999, 167006, 12805596.
-
(2003)
Plant Physiol
, vol.132
, Issue.2
, pp. 666-680
-
-
Hrabak, E.M.1
Chan, C.W.2
Gribskov, M.3
Harper, J.F.4
Choi, J.H.5
Halford, N.6
Kudla, J.7
Luan, S.8
Nimmo, H.G.9
Sussman, M.R.10
Thomas, M.11
Walker-Simmons, K.12
Zhu, J.K.13
Harmon, A.C.14
-
41
-
-
0141503468
-
Growth signalling pathways in Arabidopsis and the AGC protein kinases
-
10.1016/S1360-1385(03)00188-2, 13678909
-
Bögre L, Ökresz L, Henriques R, Anthony RG. Growth signalling pathways in Arabidopsis and the AGC protein kinases. Trends Plant Sci 2003, 8(9):424-431. 10.1016/S1360-1385(03)00188-2, 13678909.
-
(2003)
Trends Plant Sci
, vol.8
, Issue.9
, pp. 424-431
-
-
Bögre, L.1
Ökresz, L.2
Henriques, R.3
Anthony, R.G.4
-
42
-
-
0036777092
-
Glycogen synthase kinase 3/SHAGGY-like kinases in plants: an emerging family with novel functions
-
10.1016/S1360-1385(02)02331-2, 12399181
-
Jonak C, Hirt H. Glycogen synthase kinase 3/SHAGGY-like kinases in plants: an emerging family with novel functions. Trends Plant Sci 2002, 7:457-461. 10.1016/S1360-1385(02)02331-2, 12399181.
-
(2002)
Trends Plant Sci
, vol.7
, pp. 457-461
-
-
Jonak, C.1
Hirt, H.2
-
43
-
-
66649105762
-
BIN2 functions redundantly with other Arabidopsis GSK3-like kinases to regulate brassinosteroid signaling
-
10.1104/pp.109.138099, 2689954, 19395409
-
Yan Z, Zhao J, Peng P, Chiara RK, Li J. BIN2 functions redundantly with other Arabidopsis GSK3-like kinases to regulate brassinosteroid signaling. Plant Physiol 2009, 150(2):710-721. 10.1104/pp.109.138099, 2689954, 19395409.
-
(2009)
Plant Physiol
, vol.150
, Issue.2
, pp. 710-721
-
-
Yan, Z.1
Zhao, J.2
Peng, P.3
Chiara, R.K.4
Li, J.5
-
44
-
-
0035999377
-
Genome-wide analysis of core cell cycle genes in Arabidopsis
-
10.1105/tpc.010445, 150691, 11971144
-
Vandepoele K, Raes J, De Veylder L, Rouzé P, Rombauts S, Inzé D. Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell 2002, 14(4):903-916. 10.1105/tpc.010445, 150691, 11971144.
-
(2002)
Plant Cell
, vol.14
, Issue.4
, pp. 903-916
-
-
Vandepoele, K.1
Raes, J.2
De Veylder, L.3
Rouzé, P.4
Rombauts, S.5
Inzé, D.6
-
45
-
-
0028352112
-
Casein kinase II is required for transition of G0/G1, early G1, and G1/S phases of the cell cycle
-
Pepperkok R, Lorenz P, Ansorge W, Pyerin W. Casein kinase II is required for transition of G0/G1, early G1, and G1/S phases of the cell cycle. J Biol Chem 1994, 269(9):6986-6991.
-
(1994)
J Biol Chem
, vol.269
, Issue.9
, pp. 6986-6991
-
-
Pepperkok, R.1
Lorenz, P.2
Ansorge, W.3
Pyerin, W.4
-
46
-
-
57749105199
-
Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules
-
10.1104/pp.108.129346, 2593671, 18945931
-
Ben-Nissan G, Cui W, Kim DJ, Yan Y, Yoo BC, Lee JY. Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules. Plant Physiol 2008, 148(4):1897-1907. 10.1104/pp.108.129346, 2593671, 18945931.
-
(2008)
Plant Physiol
, vol.148
, Issue.4
, pp. 1897-1907
-
-
Ben-Nissan, G.1
Cui, W.2
Kim, D.J.3
Yan, Y.4
Yoo, B.C.5
Lee, J.Y.6
-
47
-
-
84871182396
-
NIMA-related kinases regulate directional cell growth and organ development through microtubule function in Arabidopsis thaliana
-
10.4161/psb.22412, 3578891, 23072999
-
Motose H, Takatani S, Ikeda T, Takahashi T. NIMA-related kinases regulate directional cell growth and organ development through microtubule function in Arabidopsis thaliana. Plant Signal Behav 2012, 7(12):1552-1555. 10.4161/psb.22412, 3578891, 23072999.
-
(2012)
Plant Signal Behav
, vol.7
, Issue.12
, pp. 1552-1555
-
-
Motose, H.1
Takatani, S.2
Ikeda, T.3
Takahashi, T.4
-
48
-
-
84855172189
-
A role for plant AURORA kinases in formative cell division
-
10.1105/tpc.111.231110, 3246327, 22045916
-
Hofmann NR. A role for plant AURORA kinases in formative cell division. Plant Cell 2011, 23(11):3867. 10.1105/tpc.111.231110, 3246327, 22045916.
-
(2011)
Plant Cell
, vol.23
, Issue.11
, pp. 3867
-
-
Hofmann, N.R.1
-
49
-
-
49349117363
-
The plant WNK gene family and regulation of flowering time in Arabidopsis
-
10.1111/j.1438-8677.2008.00072.x, 18761494
-
Wang Y, Liu K, Liao H, Zhuang C, Ma H, Yan X. The plant WNK gene family and regulation of flowering time in Arabidopsis. Plant Biol (Stuttg) 2008, 10(5):548-562. 10.1111/j.1438-8677.2008.00072.x, 18761494.
-
(2008)
Plant Biol (Stuttg)
, vol.10
, Issue.5
, pp. 548-562
-
-
Wang, Y.1
Liu, K.2
Liao, H.3
Zhuang, C.4
Ma, H.5
Yan, X.6
-
50
-
-
0035845575
-
Receptor-like kinases form Arabidopsis form a monophyletic gene family related to animal receptor kinases
-
10.1073/pnas.181141598, 58549, 11526204
-
Shiu S-H, Bleecker AB. Receptor-like kinases form Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci U S A 2001, 98(19):10763-10768. 10.1073/pnas.181141598, 58549, 11526204.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.19
, pp. 10763-10768
-
-
Shiu, S.-H.1
Bleecker, A.B.2
-
51
-
-
0242290313
-
Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote
-
10.1074/jbc.M307321200, 12912986
-
Boisson B, Giglione C, Meinnel T. Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. J Biol Chem 2003, 278(44):43418-43429. 10.1074/jbc.M307321200, 12912986.
-
(2003)
J Biol Chem
, vol.278
, Issue.44
, pp. 43418-43429
-
-
Boisson, B.1
Giglione, C.2
Meinnel, T.3
-
52
-
-
74049108922
-
BLAST+: architecture and applications
-
10.1186/1471-2105-10-421, 2803857, 20003500
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden T. BLAST+: architecture and applications. BMC Bioinformatics 2009, 10:421. 10.1186/1471-2105-10-421, 2803857, 20003500.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.7
-
53
-
-
0035799707
-
Letzality and centrality in protein networks
-
10.1038/35075138, 11333967
-
Jeong H, Mason SP, Barabási AL, Oltvai ZN. Letzality and centrality in protein networks. Nature 2001, 411:41-42. 10.1038/35075138, 11333967.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.L.3
Oltvai, Z.N.4
-
54
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
10.1126/science.1158684, 2746753, 18719252
-
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vaszquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, et al. High-quality binary protein interaction map of the yeast interactome network. Science 2008, 322(5898):104-110. 10.1126/science.1158684, 2746753, 18719252.
-
(2008)
Science
, vol.322
, Issue.5898
, pp. 104-110
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
Sahalie, J.6
Hirozane-Kishikawa, T.7
Gebreab, F.8
Li, N.9
Simonis, N.10
Hao, T.11
Rual, J.F.12
Dricot, A.13
Vaszquez, A.14
Murray, R.R.15
Simon, C.16
Tardivo, L.17
Tam, S.18
Svrzikapa, N.19
Fan, C.20
de Smet, A.S.21
Motyl, A.22
Hudson, M.E.23
Park, J.24
Xin, X.25
Cusick, M.E.26
Moore, T.27
Boone, C.28
Snyder, M.29
Roth, F.P.30
more..
-
55
-
-
84874229463
-
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
-
10.1073/pnas.1300127110, 3581894, 23382190
-
De Smet R, Adams KL, Vandepoele K, Van Montagu MC, Maere S, Van de Peer Y. Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants. Proc Natl Acad Sci U S A 2013, 110(8):2898-2903. 10.1073/pnas.1300127110, 3581894, 23382190.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.8
, pp. 2898-2903
-
-
De Smet, R.1
Adams, K.L.2
Vandepoele, K.3
Van Montagu, M.C.4
Maere, S.5
Van de Peer, Y.6
-
56
-
-
84867640565
-
Genome-wide identification and analysis of MAPK and MAPKK gene families in Brachypodium distachyon
-
10.1371/journal.pone.0046744, 3474763, 23082129
-
Chen L, Hu W, Tan S, Wang M, Ma Z, Zhou S, Deng X, Zhang Y, Huang C, Yang G, He G. Genome-wide identification and analysis of MAPK and MAPKK gene families in Brachypodium distachyon. PLoS One 2012, 7(10):e46744. 10.1371/journal.pone.0046744, 3474763, 23082129.
-
(2012)
PLoS One
, vol.7
, Issue.10
-
-
Chen, L.1
Hu, W.2
Tan, S.3
Wang, M.4
Ma, Z.5
Zhou, S.6
Deng, X.7
Zhang, Y.8
Huang, C.9
Yang, G.10
He, G.11
-
57
-
-
84867593747
-
Genome-wide analysis of lectin receptor-like kinase family from Arabidopsis and rice
-
10.1007/s11103-012-9952-8, 22936328
-
Vaid N, Pandey PK, Tuteja N. Genome-wide analysis of lectin receptor-like kinase family from Arabidopsis and rice. Plant Mol Biol 2012, 80(4-5):365-388. 10.1007/s11103-012-9952-8, 22936328.
-
(2012)
Plant Mol Biol
, vol.80
, Issue.4-5
, pp. 365-388
-
-
Vaid, N.1
Pandey, P.K.2
Tuteja, N.3
-
58
-
-
0035909867
-
Plant receptor-like kinase gene family: diversity, function, and signaling
-
Shiu S-H, Bleecker AB. Plant receptor-like kinase gene family: diversity, function, and signaling. Sci STKE 2001, 113(re22):1-13.
-
(2001)
Sci STKE
, vol.113
, Issue.RE22
, pp. 1-13
-
-
Shiu, S.-H.1
Bleecker, A.B.2
-
59
-
-
84891798301
-
EKPD: a hierarchical database of eukaryotic protein kinases and protien phosphatases
-
3965077, 24214991
-
Wang Y, Liu Z, Chen H, Gao T, Pan Z, Yang Q, Guo A, Xue Y. EKPD: a hierarchical database of eukaryotic protein kinases and protien phosphatases. Nucleic Acids Res 2014, 42(1):D496-D502. 3965077, 24214991.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.1
-
-
Wang, Y.1
Liu, Z.2
Chen, H.3
Gao, T.4
Pan, Z.5
Yang, Q.6
Guo, A.7
Xue, Y.8
-
60
-
-
84891800035
-
Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily
-
10.1093/bioinformatics/btt419, 3777111, 23904509
-
Goldberg JM, Griggs AD, Smith JL, Haas BJ, Wortman JR, Zeng Q. Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily. Bioinformatics 2013, 29(19):2387-2394. 10.1093/bioinformatics/btt419, 3777111, 23904509.
-
(2013)
Bioinformatics
, vol.29
, Issue.19
, pp. 2387-2394
-
-
Goldberg, J.M.1
Griggs, A.D.2
Smith, J.L.3
Haas, B.J.4
Wortman, J.R.5
Zeng, Q.6
-
61
-
-
34547549855
-
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana
-
10.1073/pnas.0705323104, 1914337, 17626786
-
Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2007, 104(29):12057-12062. 10.1073/pnas.0705323104, 1914337, 17626786.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.29
, pp. 12057-12062
-
-
Borevitz, J.O.1
Hazen, S.P.2
Michael, T.P.3
Morris, G.P.4
Baxter, I.R.5
Hu, T.T.6
Chen, H.7
Werner, J.D.8
Nordborg, M.9
Salt, D.E.10
Kay, S.A.11
Chory, J.12
Weigel, D.13
Jones, J.D.14
Ecker, J.R.15
-
62
-
-
77954082066
-
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana
-
10.1186/1471-2164-11-411, 2996939, 20594336
-
Riano-Pachon DM, Kleessen S, Neigenfind J, Durek P, Weber E, Engelsberger WR, Walther D, Selbig J, Schulze WX, Kersten B. Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics 2010, 11(1):411. 10.1186/1471-2164-11-411, 2996939, 20594336.
-
(2010)
BMC Genomics
, vol.11
, Issue.1
, pp. 411
-
-
Riano-Pachon, D.M.1
Kleessen, S.2
Neigenfind, J.3
Durek, P.4
Weber, E.5
Engelsberger, W.R.6
Walther, D.7
Selbig, J.8
Schulze, W.X.9
Kersten, B.10
-
63
-
-
84872317658
-
Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress
-
10.1093/jxb/ers354, 23307915
-
Osakabe Y, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS. Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress. J Exp Bot 2013, 64(2):445-458. 10.1093/jxb/ers354, 23307915.
-
(2013)
J Exp Bot
, vol.64
, Issue.2
, pp. 445-458
-
-
Osakabe, Y.1
Yamaguchi-Shinozaki, K.2
Shinozaki, K.3
Tran, L.S.4
|