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Volumn 158, Issue 3, 2012, Pages 1115-1129

A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; MAGNOLIOPHYTA;

EID: 84857950845     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.111.192393     Document Type: Article
Times cited : (139)

References (66)
  • 2
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 3
    • 84857780876 scopus 로고    scopus 로고
    • Evidence for network evolution in an Arabidopsis interactome map
    • Arabidopsis Interactome Mapping Consortium
    • Arabidopsis Interactome Mapping Consortium (2011) Evidence for network evolution in an Arabidopsis interactome map. Science 333: 601-607
    • (2011) Science , vol.333 , pp. 601-607
  • 4
    • 33646740609 scopus 로고    scopus 로고
    • Ripening in the tomato Green-ripe mutant is inhibited by ectopic expression of a protein that disrupts ethylene signaling
    • Barry CS, Giovannoni JJ (2006) Ripening in the tomato Green-ripe mutant is inhibited by ectopic expression of a protein that disrupts ethylene signaling. Proc Natl Acad Sci USA 103: 7923-7928
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 7923-7928
    • Barry, C.S.1    Giovannoni, J.J.2
  • 5
    • 0036862301 scopus 로고    scopus 로고
    • The maize dek1 gene functions in embryonic pattern formation and cell fate specification
    • Becraft PW, Li K, Dey N, Asuncion-Crabb Y (2002) The maize dek1 gene functions in embryonic pattern formation and cell fate specification. Development 129: 5217-5225
    • (2002) Development , vol.129 , pp. 5217-5225
    • Becraft, P.W.1    Li, K.2    Dey, N.3    Asuncion-Crabb, Y.4
  • 6
    • 33644842895 scopus 로고    scopus 로고
    • Requirement of aminoacyltRNA synthetases for gametogenesis and embryo development in Arabidopsis
    • Berg M, Rogers R, Muralla R, Meinke D (2005) Requirement of aminoacyltRNA synthetases for gametogenesis and embryo development in Arabidopsis. Plant J 44: 866-878
    • (2005) Plant J , vol.44 , pp. 866-878
    • Berg, M.1    Rogers, R.2    Muralla, R.3    Meinke, D.4
  • 7
    • 79953712916 scopus 로고    scopus 로고
    • Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis
    • Bryant N, Lloyd J, Sweeney C, Myouga F, Meinke D (2011) Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol 155: 1678-1689
    • (2011) Plant Physiol , vol.155 , pp. 1678-1689
    • Bryant, N.1    Lloyd, J.2    Sweeney, C.3    Myouga, F.4    Meinke, D.5
  • 8
    • 0037008186 scopus 로고    scopus 로고
    • Loss-of-function mutations in the ethylene receptor ETR1 cause enhanced sensitivity and exaggerated response to ethylene in Arabidopsis
    • Cancel JD, Larsen PB (2002) Loss-of-function mutations in the ethylene receptor ETR1 cause enhanced sensitivity and exaggerated response to ethylene in Arabidopsis. Plant Physiol 129: 1557-1567
    • (2002) Plant Physiol , vol.129 , pp. 1557-1567
    • Cancel, J.D.1    Larsen, P.B.2
  • 9
    • 46149104377 scopus 로고    scopus 로고
    • Evo-devo and an expanding evolutionary synthesis: A genetic theory of morphological evolution
    • Carroll SB (2008) Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 134: 25-36
    • (2008) Cell , vol.134 , pp. 25-36
    • Carroll, S.B.1
  • 10
    • 79959486836 scopus 로고    scopus 로고
    • Uncover disease genes by maximizing information flow in the phenome-interactome network
    • Chen Y, Jiang T, Jiang R (2011) Uncover disease genes by maximizing information flow in the phenome-interactome network. Bioinformatics 27: i167-i176
    • (2011) Bioinformatics , vol.27
    • Chen, Y.1    Jiang, T.2    Jiang, R.3
  • 11
    • 36549014611 scopus 로고    scopus 로고
    • The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1
    • Chuck G, Meeley R, Irish E, Sakai H, Hake S (2007) The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1. Nat Genet 39: 1517-1521
    • (2007) Nat Genet , vol.39 , pp. 1517-1521
    • Chuck, G.1    Meeley, R.2    Irish, E.3    Sakai, H.4    Hake, S.5
  • 12
    • 0346672411 scopus 로고    scopus 로고
    • Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans
    • Conant GC, Wagner A (2004) Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans. Proc Biol Sci 271: 89-96
    • (2004) Proc Biol Sci , vol.271 , pp. 89-96
    • Conant, G.C.1    Wagner, A.2
  • 13
    • 48249132857 scopus 로고    scopus 로고
    • Pervasive and persistent redundancy among duplicated genes in yeast
    • Dean EJ, Davis JC, Davis RW, Petrov DA (2008) Pervasive and persistent redundancy among duplicated genes in yeast. PLoS Genet 4: e1000113
    • (2008) PLoS Genet , vol.4
    • Dean, E.J.1    Davis, J.C.2    Davis, R.W.3    Petrov, D.A.4
  • 14
    • 0033165575 scopus 로고    scopus 로고
    • Gnarley1 is a dominant mutation in the knox4 homeobox gene affecting cell shape and identity
    • Foster T, Yamaguchi J, Wong BC, Veit B, Hake S (1999) gnarley1 is a dominant mutation in the knox4 homeobox gene affecting cell shape and identity. Plant Cell 11: 1239-1252
    • (1999) Plant Cell , vol.11 , pp. 1239-1252
    • Foster, T.1    Yamaguchi, J.2    Wong, B.C.3    Veit, B.4    Hake, S.5
  • 15
    • 79959825697 scopus 로고    scopus 로고
    • Morphological evolution caused by many subtle-effect substitutions in regulatory DNA
    • Frankel N, Erezyilmaz DF, McGregor AP, Wang S, Payre F, Stern DL (2011) Morphological evolution caused by many subtle-effect substitutions in regulatory DNA. Nature 474: 598-603
    • (2011) Nature , vol.474 , pp. 598-603
    • Frankel, N.1    Erezyilmaz, D.F.2    McGregor, A.P.3    Wang, S.4    Payre, F.5    Stern, D.L.6
  • 17
    • 79960909630 scopus 로고    scopus 로고
    • Phenotypemining for functional genomics and gene discovery
    • Groth P, Leser U, Weiss B (2011) Phenotypemining for functional genomics and gene discovery. Methods Mol Biol 760: 159-173
    • (2011) Methods Mol Biol , vol.760 , pp. 159-173
    • Groth, P.1    Leser, U.2    Weiss, B.3
  • 18
    • 0347033256 scopus 로고    scopus 로고
    • Role of duplicate genes in genetic robustness against null mutations
    • Gu Z, Steinmetz LM, Gu X, Scharfe C, Davis RW, Li WH (2003) Role of duplicate genes in genetic robustness against null mutations. Nature 421: 63-66
    • (2003) Nature , vol.421 , pp. 63-66
    • Gu, Z.1    Steinmetz, L.M.2    Gu, X.3    Scharfe, C.4    Davis, R.W.5    Li, W.H.6
  • 19
    • 66049128566 scopus 로고    scopus 로고
    • Distinguishing among evolutionary models for the maintenance of gene duplicates
    • Hahn MW (2009) Distinguishing among evolutionary models for the maintenance of gene duplicates. J Hered 100: 605-617
    • (2009) J Hered , vol.100 , pp. 605-617
    • Hahn, M.W.1
  • 21
    • 24944481699 scopus 로고    scopus 로고
    • An allelic series reveals essential roles for FY in plant development in addition to flowering-time control
    • Henderson IR, Liu F, Drea S, Simpson GG, Dean C (2005) An allelic series reveals essential roles for FY in plant development in addition to flowering-time control. Development 132: 3597-3607
    • (2005) Development , vol.132 , pp. 3597-3607
    • Henderson, I.R.1    Liu, F.2    Drea, S.3    Simpson, G.G.4    Dean, C.5
  • 24
    • 41949116392 scopus 로고    scopus 로고
    • Role of duplicate genes in robustness against deleterious human mutations
    • Hsiao TL, Vitkup D (2008) Role of duplicate genes in robustness against deleterious human mutations. PLoS Genet 4: e1000014
    • (2008) PLoS Genet , vol.4
    • Hsiao, T.L.1    Vitkup, D.2
  • 27
    • 33644808012 scopus 로고    scopus 로고
    • AtDEK1 is essential for specification of embryonic epidermal cell fate
    • Johnson KL, Degnan KA, Ross Walker J, Ingram GC (2005) AtDEK1 is essential for specification of embryonic epidermal cell fate. Plant J 44: 114-127
    • (2005) Plant J , vol.44 , pp. 114-127
    • Johnson, K.L.1    Degnan, K.A.2    Ross Walker, J.3    Ingram, G.C.4
  • 28
    • 6944228992 scopus 로고    scopus 로고
    • Specification of adaxial cell fate during maize leaf development
    • Juarez MT, Twigg RW, Timmermans MC (2004) Specification of adaxial cell fate during maize leaf development. Development 131: 4533-4544
    • (2004) Development , vol.131 , pp. 4533-4544
    • Juarez, M.T.1    Twigg, R.W.2    Timmermans, M.C.3
  • 29
    • 67651097787 scopus 로고    scopus 로고
    • Phenome analysis in plant species using loss-of-function and gain-offunction mutants
    • Kuromori T, Takahashi S, Kondou Y, Shinozaki K, Matsui M (2009) Phenome analysis in plant species using loss-of-function and gain-offunction mutants. Plant Cell Physiol 50: 1215-1231
    • (2009) Plant Cell Physiol , vol.50 , pp. 1215-1231
    • Kuromori, T.1    Takahashi, S.2    Kondou, Y.3    Shinozaki, K.4    Matsui, M.5
  • 30
    • 34447637417 scopus 로고    scopus 로고
    • Mouse duplicate genes are as essential as singletons
    • Liao BY, Zhang J (2007) Mouse duplicate genes are as essential as singletons. Trends Genet 23: 378-381
    • (2007) Trends Genet , vol.23 , pp. 378-381
    • Liao, B.Y.1    Zhang, J.2
  • 31
    • 73949083248 scopus 로고    scopus 로고
    • Gene expression profiling of ozone-treated Arabidopsis abi1td insertional mutant: Protein phosphatase 2C ABI1 modulates biosynthesis ratio of ABA and ethylene
    • Ludwików A, Kierzek D, Gallois P, Zeef L, Sadowski J (2009) Gene expression profiling of ozone-treated Arabidopsis abi1td insertional mutant: protein phosphatase 2C ABI1 modulates biosynthesis ratio of ABA and ethylene. Planta 230: 1003-1017
    • (2009) Planta , vol.230 , pp. 1003-1017
    • Ludwików, A.1    Kierzek, D.2    Gallois, P.3    Zeef, L.4    Sadowski, J.5
  • 33
    • 63449086872 scopus 로고    scopus 로고
    • The complex relationship of gene duplication and essentiality
    • Makino T, Hokamp K, McLysaght A (2009) The complex relationship of gene duplication and essentiality. Trends Genet 25: 152-155
    • (2009) Trends Genet , vol.25 , pp. 152-155
    • Makino, T.1    Hokamp, K.2    McLysaght, A.3
  • 35
    • 34147122065 scopus 로고    scopus 로고
    • Mendelian Inheritance in Man and its online version, OMIM
    • McKusick VA (2007) Mendelian Inheritance in Man and its online version, OMIM. Am J Hum Genet 80: 588-604
    • (2007) Am J Hum Genet , vol.80 , pp. 588-604
    • McKusick, V.A.1
  • 36
    • 0030873995 scopus 로고    scopus 로고
    • Community standards for Arabidopsis genetics
    • Meinke D, Koornneef M (1997) Community standards for Arabidopsis genetics. Plant J 12: 247-253
    • (1997) Plant J , vol.12 , pp. 247-253
    • Meinke, D.1    Koornneef, M.2
  • 38
    • 70350217260 scopus 로고    scopus 로고
    • Integrating the genetic and physical maps of Arabidopsis thaliana: Identification of mapped alleles of cloned essential (EMB) genes
    • Meinke D, Sweeney C, Muralla R (2009) Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes. PLoS ONE 4: e7386
    • (2009) PLoS ONE , vol.4
    • Meinke, D.1    Sweeney, C.2    Muralla, R.3
  • 41
    • 82555185558 scopus 로고    scopus 로고
    • Molecular foundations of reproductive lethality in Arabidopsis thaliana
    • Muralla R, Lloyd J, Meinke D (2011) Molecular foundations of reproductive lethality in Arabidopsis thaliana. PLoS ONE 6: e28398
    • (2011) PLoS ONE , vol.6
    • Muralla, R.1    Lloyd, J.2    Meinke, D.3
  • 42
    • 0036800411 scopus 로고    scopus 로고
    • Expression of a mutant maize gene in the ventral leaf epidermis is sufficient to signal a switch of the leaf's dorsoventral axis
    • Nelson JM, Lane B, Freeling M (2002) Expression of a mutant maize gene in the ventral leaf epidermis is sufficient to signal a switch of the leaf's dorsoventral axis. Development 129: 4581-4589
    • (2002) Development , vol.129 , pp. 4581-4589
    • Nelson, J.M.1    Lane, B.2    Freeling, M.3
  • 44
    • 77950452042 scopus 로고    scopus 로고
    • Linking genotype to phenotype using the Arabidopsis unimutant collection
    • O'Malley RC, Ecker JR (2010) Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J 61: 928-940
    • (2010) Plant J , vol.61 , pp. 928-940
    • O'Malley, R.C.1    Ecker, J.R.2
  • 45
    • 0031428269 scopus 로고    scopus 로고
    • The dominant developmental mutants of tomato, Mouse-ear and Curl, are associated with distinct modes of abnormal transcriptional regulation of a Knotted gene
    • Parnis A, Cohen O, Gutfinger T, Hareven D, Zamir D, Lifschitz E (1997) The dominant developmental mutants of tomato, Mouse-ear and Curl, are associated with distinct modes of abnormal transcriptional regulation of a Knotted gene. Plant Cell 9: 2143-2158
    • (1997) Plant Cell , vol.9 , pp. 2143-2158
    • Parnis, A.1    Cohen, O.2    Gutfinger, T.3    Hareven, D.4    Zamir, D.5    Lifschitz, E.6
  • 46
    • 0030708651 scopus 로고    scopus 로고
    • The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses
    • Peng J, Carol P, Richards DE, King KE, Cowling RJ, Murphy GP, Harberd NP (1997) The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses. Genes Dev 11: 3194-3205
    • (1997) Genes Dev , vol.11 , pp. 3194-3205
    • Peng, J.1    Carol, P.2    Richards, D.E.3    King, K.E.4    Cowling, R.J.5    Murphy, G.P.6    Harberd, N.P.7
  • 47
    • 77956781437 scopus 로고    scopus 로고
    • Maintenance of duplicate genes and their functional redundancy by reduced expression
    • Qian W, Liao BY, Chang AYF, Zhang J (2010) Maintenance of duplicate genes and their functional redundancy by reduced expression. Trends Genet 26: 425-430
    • (2010) Trends Genet , vol.26 , pp. 425-430
    • Qian, W.1    Liao, B.Y.2    Chang, A.Y.F.3    Zhang, J.4
  • 48
    • 1642276286 scopus 로고    scopus 로고
    • An improved prediction of chloroplast proteins reveals diversities and commonalities in the chloroplast proteomes of Arabidopsis and rice
    • Richly E, Leister D (2004) An improved prediction of chloroplast proteins reveals diversities and commonalities in the chloroplast proteomes of Arabidopsis and rice. Gene 329: 11-16
    • (2004) Gene , vol.329 , pp. 11-16
    • Richly, E.1    Leister, D.2
  • 49
    • 0033082657 scopus 로고    scopus 로고
    • Regulation of carotenoid biosynthesis during tomato fruit development: Expression of the gene for lycopene epsilon-cyclase is down-regulated during ripening and is elevated in the mutant Delta
    • Ronen G, Cohen M, Zamir D, Hirschberg J (1999) Regulation of carotenoid biosynthesis during tomato fruit development: expression of the gene for lycopene epsilon-cyclase is down-regulated during ripening and is elevated in the mutant Delta. Plant J 17: 341-351
    • (1999) Plant J , vol.17 , pp. 341-351
    • Ronen, G.1    Cohen, M.2    Zamir, D.3    Hirschberg, J.4
  • 50
    • 1642465435 scopus 로고    scopus 로고
    • An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics
    • Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B (2003) An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. PlantMol Biol 53: 247-259
    • (2003) PlantMol Biol , vol.53 , pp. 247-259
    • Rosso, M.G.1    Li, Y.2    Strizhov, N.3    Reiss, B.4    Dekker, K.5    Weisshaar, B.6
  • 51
    • 79952495788 scopus 로고    scopus 로고
    • Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize
    • Schnable JC, Freeling M (2011) Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize. PLoS ONE 6: e17855
    • (2011) PLoS ONE , vol.6
    • Schnable, J.C.1    Freeling, M.2
  • 53
    • 0028981075 scopus 로고
    • Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf
    • Schneeberger RG, Becraft PW, Hake S, Freeling M (1995) Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf. Genes Dev 9: 2292-2304
    • (1995) Genes Dev , vol.9 , pp. 2292-2304
    • Schneeberger, R.G.1    Becraft, P.W.2    Hake, S.3    Freeling, M.4
  • 55
    • 79953039351 scopus 로고    scopus 로고
    • High-throughput phenotyping of multicellular organisms: Finding the link between genotype and phenotype
    • Sozzani R, Benfey PN (2011) High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype. Genome Biol 12: 219
    • (2011) Genome Biol , vol.12 , pp. 219
    • Sozzani, R.1    Benfey, P.N.2
  • 58
    • 52949151512 scopus 로고    scopus 로고
    • Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution
    • Vavouri T, Semple JI, Lehner B (2008) Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution. Trends Genet 24: 485-488
    • (2008) Trends Genet , vol.24 , pp. 485-488
    • Vavouri, T.1    Semple, J.I.2    Lehner, B.3
  • 59
    • 0028893838 scopus 로고
    • How often do duplicated genes evolve new functions?
    • Walsh JB (1995) How often do duplicated genes evolve new functions? Genetics 139: 421-428
    • (1995) Genetics , vol.139 , pp. 421-428
    • Walsh, J.B.1
  • 61
    • 84855268714 scopus 로고    scopus 로고
    • Natural variation in Arabidopsis: From molecular genetics to ecological genomics
    • Weigel D (2012) Natural variation in Arabidopsis: from molecular genetics to ecological genomics. Plant Physiol 158: 2-22
    • (2012) Plant Physiol , vol.158 , pp. 2-22
    • Weigel, D.1
  • 62
    • 0026871098 scopus 로고
    • The maize auxotrophic mutant orange pericarp is defective in duplicate genes for tryptophan synthase b
    • Wright AD, Moehlenkamp CA, Perrot GH, Neuffer MG, Cone KC (1992) The maize auxotrophic mutant orange pericarp is defective in duplicate genes for tryptophan synthase b. Plant Cell 4: 711-719
    • (1992) Plant Cell , vol.4 , pp. 711-719
    • Wright, A.D.1    Moehlenkamp, C.A.2    Perrot, G.H.3    Neuffer, M.G.4    Cone, K.C.5
  • 63
    • 62549120343 scopus 로고    scopus 로고
    • Discordia1 and alternative discordia1 function redundantly at the cortical division site to promote preprophase band formation and orient division planes in maize
    • Wright AJ, Gallagher K, Smith LG (2009) discordia1 and alternative discordia1 function redundantly at the cortical division site to promote preprophase band formation and orient division planes in maize. Plant Cell 21: 234-247
    • (2009) Plant Cell , vol.21 , pp. 234-247
    • Wright, A.J.1    Gallagher, K.2    Smith, L.G.3
  • 64
    • 33751017706 scopus 로고    scopus 로고
    • Discovering disease-genes by topological features in human protein-protein interaction network
    • Xu J, Li Y (2006) Discovering disease-genes by topological features in human protein-protein interaction network. Bioinformatics 22: 2800-2805
    • (2006) Bioinformatics , vol.22 , pp. 2800-2805
    • Xu, J.1    Li, Y.2
  • 65
    • 79960732452 scopus 로고    scopus 로고
    • Inferring gene-phenotype associations via global protein complex network propagation
    • Yang P, Li X, Wu M, Kwoh CK, Ng SK (2011) Inferring gene-phenotype associations via global protein complex network propagation. PLoS ONE 6: e21502
    • (2011) PLoS ONE , vol.6
    • Yang, P.1    Li, X.2    Wu, M.3    Kwoh, C.K.4    Ng, S.K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.