-
1
-
-
0036527429
-
Protein kinases: the major drug targets of the twenty-first century?
-
Cohen P. Protein kinases: the major drug targets of the twenty-first century?. Nat. Rev. Drug Discov. 2002, 1:309-315.
-
(2002)
Nat. Rev. Drug Discov.
, vol.1
, pp. 309-315
-
-
Cohen, P.1
-
2
-
-
64249149813
-
Snf1-related protein kinases (SnRKs) act within an intricate network that links metabolic and stress signalling in plants
-
Halford N.G., Hey S.J. Snf1-related protein kinases (SnRKs) act within an intricate network that links metabolic and stress signalling in plants. Biochem. J. 2009, 419:247-259.
-
(2009)
Biochem. J.
, vol.419
, pp. 247-259
-
-
Halford, N.G.1
Hey, S.J.2
-
3
-
-
0036999615
-
Salt and drought stress signal transduction in plants
-
Zhu J.-K. Salt and drought stress signal transduction in plants. Annu. Rev. Plant Biol. 2002, 53:247-273.
-
(2002)
Annu. Rev. Plant Biol.
, vol.53
, pp. 247-273
-
-
Zhu, J.-K.1
-
4
-
-
18744415995
-
Kinomics: methods for deciphering the kinome
-
Johnson S.A., Hunter T. Kinomics: methods for deciphering the kinome. Nat. Methods 2005, 2:17-25.
-
(2005)
Nat. Methods
, vol.2
, pp. 17-25
-
-
Johnson, S.A.1
Hunter, T.2
-
5
-
-
33748573639
-
Charging it up: global analysis of protein phosphorylation
-
Ptacek J., Snyder M. Charging it up: global analysis of protein phosphorylation. Trends Genet. 2006, 22:545-554.
-
(2006)
Trends Genet.
, vol.22
, pp. 545-554
-
-
Ptacek, J.1
Snyder, M.2
-
7
-
-
49749106279
-
Linking the kinome and phosphorylome: a comprehensive review of approaches to find kinase targets
-
Sopko R., Andrews B.J. Linking the kinome and phosphorylome: a comprehensive review of approaches to find kinase targets. Mol. Biosyst. 2008, 4:920-933.
-
(2008)
Mol. Biosyst.
, vol.4
, pp. 920-933
-
-
Sopko, R.1
Andrews, B.J.2
-
8
-
-
27644573819
-
High throughput identification of potential Arabidopsis mitogen-activated protein kinase substrates
-
Feilner T., Hultschig C., Lee J., Meyer S., Immink R.G., Koenig A., Possling A., Seitz H., Beveridge A., Scheel D., Cahill D.J., Lehrach H., Kreutzberger J., Kersten B. High throughput identification of potential Arabidopsis mitogen-activated protein kinase substrates. Mol. Cell. Proteomics 2005, 4:1558-1568.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1558-1568
-
-
Feilner, T.1
Hultschig, C.2
Lee, J.3
Meyer, S.4
Immink, R.G.5
Koenig, A.6
Possling, A.7
Seitz, H.8
Beveridge, A.9
Scheel, D.10
Cahill, D.J.11
Lehrach, H.12
Kreutzberger, J.13
Kersten, B.14
-
9
-
-
4043158549
-
Profiling of generic anti-phosphopeptide antibodies and kinases with peptide microarrays using radioactive and fluorescence-based assays
-
Panse S., Dong L., Burian A., Carus R., Schutkowski M., Reimer U., Schneider-Mergener J. Profiling of generic anti-phosphopeptide antibodies and kinases with peptide microarrays using radioactive and fluorescence-based assays. Mol. Divers. 2004, 8:291-299.
-
(2004)
Mol. Divers.
, vol.8
, pp. 291-299
-
-
Panse, S.1
Dong, L.2
Burian, A.3
Carus, R.4
Schutkowski, M.5
Reimer, U.6
Schneider-Mergener, J.7
-
10
-
-
28444460297
-
Global analysis of protein phosphorylation in yeast
-
Ptacek J., Devgan G., Michaud G., Zhu H., Zhu X., Fasolo J., Guo H., Jona G., Breitkreutz A., Sopko R., McCartney R.R., Schmidt M.C., Rachidi N., Lee S.-J., Mah A.S., Meng L., Stark M.J.R., Stern D.F., De Virgilio C., Tyers M., Andrews B., Gerstein M., Schweitzer B., Predki P.F., Snyder M. Global analysis of protein phosphorylation in yeast. Nature 2005, 438:679-684.
-
(2005)
Nature
, vol.438
, pp. 679-684
-
-
Ptacek, J.1
Devgan, G.2
Michaud, G.3
Zhu, H.4
Zhu, X.5
Fasolo, J.6
Guo, H.7
Jona, G.8
Breitkreutz, A.9
Sopko, R.10
McCartney, R.R.11
Schmidt, M.C.12
Rachidi, N.13
Lee, S.-J.14
Mah, A.S.15
Meng, L.16
Stark, M.J.R.17
Stern, D.F.18
De Virgilio, C.19
Tyers, M.20
Andrews, B.21
Gerstein, M.22
Schweitzer, B.23
Predki, P.F.24
Snyder, M.25
more..
-
11
-
-
0036008093
-
A chemical genetic screen for direct v-Src substrates reveals ordered assembly of a retrograde signaling pathway
-
Shah K., Shokat K.M. A chemical genetic screen for direct v-Src substrates reveals ordered assembly of a retrograde signaling pathway. Chem. Biol. 2002, 9:35-47.
-
(2002)
Chem. Biol.
, vol.9
, pp. 35-47
-
-
Shah, K.1
Shokat, K.M.2
-
12
-
-
0242300176
-
Targets of the cyclin-dependent kinase Cdk1
-
Ubersax J.A., Woodbury E.L., Quang P.N., Paraz M., Blethrow J.D., Shah K., Shokat K.M., Morgan D.O. Targets of the cyclin-dependent kinase Cdk1. Nature 2003, 425:859-864.
-
(2003)
Nature
, vol.425
, pp. 859-864
-
-
Ubersax, J.A.1
Woodbury, E.L.2
Quang, P.N.3
Paraz, M.4
Blethrow, J.D.5
Shah, K.6
Shokat, K.M.7
Morgan, D.O.8
-
13
-
-
34447518795
-
A multiplexed protein kinase assay
-
Shults M.D., Kozlov I.A., Nelson N., Kermani B.G., Melnyk P.C., Shevchenko V., Srinivasan A., Musmacker J., Hachmann J.P., Barker D.L., Lebl M., Zhao C. A multiplexed protein kinase assay. ChemBioChem 2007, 8:933-942.
-
(2007)
ChemBioChem
, vol.8
, pp. 933-942
-
-
Shults, M.D.1
Kozlov, I.A.2
Nelson, N.3
Kermani, B.G.4
Melnyk, P.C.5
Shevchenko, V.6
Srinivasan, A.7
Musmacker, J.8
Hachmann, J.P.9
Barker, D.L.10
Lebl, M.11
Zhao, C.12
-
14
-
-
0036199649
-
Peptide chips for the quantitative evaluation of protein kinase activity
-
Houseman B.T., Huh J.H., Kron S.J., Mrksich M. Peptide chips for the quantitative evaluation of protein kinase activity. Nat. Biotechnol. 2002, 20:270-274.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 270-274
-
-
Houseman, B.T.1
Huh, J.H.2
Kron, S.J.3
Mrksich, M.4
-
15
-
-
9244243049
-
Profiling kinase activities by using a peptide chip and mass spectrometry
-
Min D.H., Su J., Mrksich M. Profiling kinase activities by using a peptide chip and mass spectrometry. Angew. Chem. Intl. Ed. Engl. 2004, 43:5973-5977.
-
(2004)
Angew. Chem. Intl. Ed. Engl.
, vol.43
, pp. 5973-5977
-
-
Min, D.H.1
Su, J.2
Mrksich, M.3
-
16
-
-
21444454894
-
A second-site suppressor strategy for chemical genetic analysis of diverse protein kinases
-
Zhang C., Kenski D.M., Paulson J.L., Bonshtien A., Sessa G., Cross J.V., Templeton D.J., Shokat K.M. A second-site suppressor strategy for chemical genetic analysis of diverse protein kinases. Nat. Methods 2005, 2:435-441.
-
(2005)
Nat. Methods
, vol.2
, pp. 435-441
-
-
Zhang, C.1
Kenski, D.M.2
Paulson, J.L.3
Bonshtien, A.4
Sessa, G.5
Cross, J.V.6
Templeton, D.J.7
Shokat, K.M.8
-
17
-
-
68949206409
-
Applying mass spectrometry-based proteomics to genetics, genomics, and network biology
-
Gstaiger M., Aebersold R. Applying mass spectrometry-based proteomics to genetics, genomics, and network biology. Nat. Rev. Genet. 2009, 10:617-627.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 617-627
-
-
Gstaiger, M.1
Aebersold, R.2
-
18
-
-
23944453389
-
Global phosphoproteome of HT-29 human colon adenocarcinoma cells
-
Kim J.E., Tannenbaum S.R., White F.M. Global phosphoproteome of HT-29 human colon adenocarcinoma cells. J. Proteome Res. 2005, 4:1339-1346.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 1339-1346
-
-
Kim, J.E.1
Tannenbaum, S.R.2
White, F.M.3
-
20
-
-
66649127498
-
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks
-
Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A., Grossmann J., Gruissem W., Baginsky S. Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol. 2009, 150:889-903.
-
(2009)
Plant Physiol.
, vol.150
, pp. 889-903
-
-
Reiland, S.1
Messerli, G.2
Baerenfaller, K.3
Gerrits, B.4
Endler, A.5
Grossmann, J.6
Gruissem, W.7
Baginsky, S.8
-
21
-
-
49849088762
-
Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis
-
de la Fuente van Bentem S., Anrather D., Dohnal I., Roitinger E., Csaszar E., Joore J., Buijnink J., Carreri A., Forzani C., Lorkovic Z.J., Barta A., Lecourieux D., Verhounig A., Jonak C., Hirt H. Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. J. Proteome Res. 2008, 7:2458-2470.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 2458-2470
-
-
de la Fuente van Bentem, S.1
Anrather, D.2
Dohnal, I.3
Roitinger, E.4
Csaszar, E.5
Joore, J.6
Buijnink, J.7
Carreri, A.8
Forzani, C.9
Lorkovic, Z.J.10
Barta, A.11
Lecourieux, D.12
Verhounig, A.13
Jonak, C.14
Hirt, H.15
-
22
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
Liu H., Sadygov R.G., Yates J.R. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76:4193-4201.
-
(2004)
Anal. Chem.
, vol.76
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates, J.R.3
-
23
-
-
68549083832
-
Rapid label-free identification of estrogen-induced differential protein expression in vivo from mouse brain and uterine tissue
-
Prokai L., Stevens S.M., Rauniyar N., Nguyen V. Rapid label-free identification of estrogen-induced differential protein expression in vivo from mouse brain and uterine tissue. J. Proteome Res. 2009, 8:3862-3871.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 3862-3871
-
-
Prokai, L.1
Stevens, S.M.2
Rauniyar, N.3
Nguyen, V.4
-
24
-
-
63649131272
-
Validation of gel-free, label-free quantitative proteomics approaches: applications for seed allergen profiling
-
Stevenson S.E., Chu Y., Ozias-Akins P., Thelen J.J. Validation of gel-free, label-free quantitative proteomics approaches: applications for seed allergen profiling. J. Proteomics 2009, 72:555-566.
-
(2009)
J. Proteomics
, vol.72
, pp. 555-566
-
-
Stevenson, S.E.1
Chu, Y.2
Ozias-Akins, P.3
Thelen, J.J.4
-
25
-
-
11144256939
-
Analysis of the catalytic mechanism of pyruvate dehydrogenase kinase
-
Tovar-Mendez A., Hirani T.A., Miernyk J.A., Randall D.D. Analysis of the catalytic mechanism of pyruvate dehydrogenase kinase. Arch. Biochem. Biophys. 2005, 434:159-168.
-
(2005)
Arch. Biochem. Biophys.
, vol.434
, pp. 159-168
-
-
Tovar-Mendez, A.1
Hirani, T.A.2
Miernyk, J.A.3
Randall, D.D.4
-
26
-
-
4444236919
-
Phosphoric acid as a matrix additive for MALDI MS analysis of phosphopeptides and phosphoproteins
-
Kjellström S., Jensen O.N. Phosphoric acid as a matrix additive for MALDI MS analysis of phosphopeptides and phosphoproteins. Anal. Chem. 2004, 76:5109-5117.
-
(2004)
Anal. Chem.
, vol.76
, pp. 5109-5117
-
-
Kjellström, S.1
Jensen, O.N.2
-
27
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127:635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
28
-
-
3042824849
-
A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry
-
Schroeder M.J., Shabanowitz J., Schwartz J.C., Hunt D.F., Coon J.J. A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry. Anal. Chem. 2004, 76:3590-3598.
-
(2004)
Anal. Chem.
, vol.76
, pp. 3590-3598
-
-
Schroeder, M.J.1
Shabanowitz, J.2
Schwartz, J.C.3
Hunt, D.F.4
Coon, J.J.5
-
30
-
-
77952746177
-
Oxidation of an adjacent methionine residue inhibits regulatory seryl-phosphorylation of pyruvate dehydrogenase
-
Miernyk J.A., Johnston M.L., Huber S.C., Tovar-Méndez A., Hoyos E., Randall D.D. Oxidation of an adjacent methionine residue inhibits regulatory seryl-phosphorylation of pyruvate dehydrogenase. Proteomics Insights 2009, 2:15-22.
-
(2009)
Proteomics Insights
, vol.2
, pp. 15-22
-
-
Miernyk, J.A.1
Johnston, M.L.2
Huber, S.C.3
Tovar-Méndez, A.4
Hoyos, E.5
Randall, D.D.6
-
31
-
-
0034234737
-
Pyruvate dehydrogenase kinase from Arabidopsis thaliana: a protein histidine kinase that phosphorylates serine residues
-
Thelen J.J., Miernyk J.A., Randall D.D. Pyruvate dehydrogenase kinase from Arabidopsis thaliana: a protein histidine kinase that phosphorylates serine residues. Biochem. J. 2000, 349:195-201.
-
(2000)
Biochem. J.
, vol.349
, pp. 195-201
-
-
Thelen, J.J.1
Miernyk, J.A.2
Randall, D.D.3
-
32
-
-
0017355369
-
Peptides derived from pyruvate dehydrogenase as substrates for pyruvate dehydrogenase kinase and phosphatase
-
Davis P.F., Pettit F.H., Reed L.J. Peptides derived from pyruvate dehydrogenase as substrates for pyruvate dehydrogenase kinase and phosphatase. Biochem. Biophys. Res. Commun. 1977, 75:541-549.
-
(1977)
Biochem. Biophys. Res. Commun.
, vol.75
, pp. 541-549
-
-
Davis, P.F.1
Pettit, F.H.2
Reed, L.J.3
-
33
-
-
0022395251
-
Synthetic peptide substrates for mammalian pyruvate dehydrogenase kinase and pyruvate dehydrogenase phosphatase
-
Mullinax T.R., Stepp L.R., Brown J.R., Reed L.J. Synthetic peptide substrates for mammalian pyruvate dehydrogenase kinase and pyruvate dehydrogenase phosphatase. Arch. Biochem. Biophys. 1985, 243:655-659.
-
(1985)
Arch. Biochem. Biophys.
, vol.243
, pp. 655-659
-
-
Mullinax, T.R.1
Stepp, L.R.2
Brown, J.R.3
Reed, L.J.4
-
34
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias J.E., Gygi S.P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4:207-214.
-
(2007)
Nat. Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
35
-
-
0032189790
-
Purification of a nitrate reductase kinase from Spinacea oleracea leaves, and its identification as a calmodulin-domain protein kinase
-
Douglas P., Moorhead G., Hong Y., Morrice N., MacKintosh C. Purification of a nitrate reductase kinase from Spinacea oleracea leaves, and its identification as a calmodulin-domain protein kinase. Planta 1998, 206:435-442.
-
(1998)
Planta
, vol.206
, pp. 435-442
-
-
Douglas, P.1
Moorhead, G.2
Hong, Y.3
Morrice, N.4
MacKintosh, C.5
-
36
-
-
0035450520
-
Identification of a novel phosphorylation motif for CDPKs: phosphorylation of synthetic peptides lacking basic residues at P-3/P-4
-
Huang J.Z., Hardin S.C., Huber S.C. Identification of a novel phosphorylation motif for CDPKs: phosphorylation of synthetic peptides lacking basic residues at P-3/P-4. Arch. Biochem. Biophys. 2001, 393:61-66.
-
(2001)
Arch. Biochem. Biophys.
, vol.393
, pp. 61-66
-
-
Huang, J.Z.1
Hardin, S.C.2
Huber, S.C.3
-
37
-
-
0034757497
-
Phosphorylation of synthetic peptides by a CDPK and plant SNF1-related protein kinase: Influence of proline and basic amino acid residues at selected positions
-
Huang J.Z., Huber S.C. Phosphorylation of synthetic peptides by a CDPK and plant SNF1-related protein kinase: Influence of proline and basic amino acid residues at selected positions. Plant Cell Physiol. 2001, 42:1079-1087.
-
(2001)
Plant Cell Physiol.
, vol.42
, pp. 1079-1087
-
-
Huang, J.Z.1
Huber, S.C.2
-
38
-
-
55849104839
-
Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications
-
Wiesner J., Premsler T., Sickmann A. Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications. Proteomics 2008, 8:4466-4483.
-
(2008)
Proteomics
, vol.8
, pp. 4466-4483
-
-
Wiesner, J.1
Premsler, T.2
Sickmann, A.3
-
39
-
-
46849098407
-
Comprehensive comparison of collision induced dissociation and electron transfer dissociation
-
Molina H., Matthiesen R., Kandasamy K., Pandey A. Comprehensive comparison of collision induced dissociation and electron transfer dissociation. Anal. Chem. 2008, 80:4825-4835.
-
(2008)
Anal. Chem.
, vol.80
, pp. 4825-4835
-
-
Molina, H.1
Matthiesen, R.2
Kandasamy, K.3
Pandey, A.4
-
40
-
-
67650756925
-
Identification of peptide substrate and small molecule inhibitors of testis-specific serine/threonine kinase1 (TSSK1) by the developed assays
-
Zhang L., Yan Y., Liu Z., Abliz Z., Liu G. Identification of peptide substrate and small molecule inhibitors of testis-specific serine/threonine kinase1 (TSSK1) by the developed assays. J. Med. Chem. 2009, 52:4419-4428.
-
(2009)
J. Med. Chem.
, vol.52
, pp. 4419-4428
-
-
Zhang, L.1
Yan, Y.2
Liu, Z.3
Abliz, Z.4
Liu, G.5
-
41
-
-
70149092747
-
Coupling oxidative signals to protein phosphorylation via methionine oxidation in Arabidopsis
-
Hardin S.C., Larue C.T., Oh M.H., Jain V., Huber S.C. Coupling oxidative signals to protein phosphorylation via methionine oxidation in Arabidopsis. Biochem. J. 2009, 422:305-312.
-
(2009)
Biochem. J.
, vol.422
, pp. 305-312
-
-
Hardin, S.C.1
Larue, C.T.2
Oh, M.H.3
Jain, V.4
Huber, S.C.5
-
42
-
-
40349092941
-
Covalent capture of kinase-specific phosphopeptides reveals Cdk1-cyclin B substrates
-
Blethrow J.D., Glavy J.S., Morgan D.O., Shokat K.M. Covalent capture of kinase-specific phosphopeptides reveals Cdk1-cyclin B substrates. Proc. Natl. Acad. Sci. USA 2008, 105:1442-1447.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 1442-1447
-
-
Blethrow, J.D.1
Glavy, J.S.2
Morgan, D.O.3
Shokat, K.M.4
-
43
-
-
30044441052
-
KESTREL: a powerful method for identifying the physiological substrates of protein kinases
-
Cohen P., Knebel A. KESTREL: a powerful method for identifying the physiological substrates of protein kinases. Biochem. J. 2006, 393:1-6.
-
(2006)
Biochem. J.
, vol.393
, pp. 1-6
-
-
Cohen, P.1
Knebel, A.2
|