-
1
-
-
84865060813
-
PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets
-
Pinto AJ, Raskin L (2012) PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets. PLoS One 7: e43093.
-
(2012)
PLoS One
, vol.7
-
-
Pinto, A.J.1
Raskin, L.2
-
2
-
-
2942525588
-
Molecular microbial ecology: Land of the one-eyed king
-
DOI 10.1016/j.mib.2004.04.015, PII S1369527404000530
-
Forney LJ, Zhou X, Brown CJ (2004) Molecular microbial ecology: land of the one-eyed king. Curr Opin Microbiol 7: 210-220. (Pubitemid 38758061)
-
(2004)
Current Opinion in Microbiology
, vol.7
, Issue.3
, pp. 210-220
-
-
Forney, L.J.1
Zhou, X.2
Brown, C.J.3
-
3
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
DOI 10.1016/S0168-6445(97)00057-0, PII S0168644597000570
-
von Wintzingerode F, Gobel UB, Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21: 213-229. (Pubitemid 28018202)
-
(1997)
FEMS Microbiology Reviews
, vol.21
, Issue.3
, pp. 213-229
-
-
Wintzingerode, F.V.1
Gobel, U.B.2
Stackebrandt, E.3
-
4
-
-
72649084530
-
Polymerase chain reaction primers miss half of rRNA microbial diversity
-
Hong S, Bunge J, Leslin C, Jeon S, Epstein SS (2009) Polymerase chain reaction primers miss half of rRNA microbial diversity. ISME J 3: 1365-1373.
-
(2009)
ISME J
, vol.3
, pp. 1365-1373
-
-
Hong, S.1
Bunge, J.2
Leslin, C.3
Jeon, S.4
Epstein, S.S.5
-
5
-
-
84860370749
-
Coverage evaluation of universal bacterial primers using the metagenomic datasets
-
Mao DP, Zhou Q, Chen CY, Quan ZX (2012) Coverage evaluation of universal bacterial primers using the metagenomic datasets. BMC Microbiol 12: 66.
-
(2012)
BMC Microbiol
, vol.12
, pp. 66
-
-
Mao, D.P.1
Zhou, Q.2
Chen, C.Y.3
Quan, Z.X.4
-
6
-
-
34247098019
-
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis
-
DOI 10.1111/j.1574-6941.2007.00283.x
-
Sipos R, Szekely AJ, Palatinszky M, Revesz S, Marialigeti K, et al. (2007) Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis. FEMS Microbiol Ecol 60: 341-350. (Pubitemid 46597310)
-
(2007)
FEMS Microbiology Ecology
, vol.60
, Issue.2
, pp. 341-350
-
-
Sipos, R.1
Szekely, A.J.2
Palatinszky, M.3
Revesz, S.4
Marialigeti, K.5
Nikolausz, M.6
-
7
-
-
17544386645
-
The effects of sequence length and oligonucleotide mismatches on 5′ exonuclease assay efficiency
-
Smith S, Vigilant L, Morin PA (2002) The effects of sequence length and oligonucleotide mismatches on 5′ exonuclease assay efficiency. Nucleic Acids Res 30: e111.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Smith, S.1
Vigilant, L.2
Morin, P.A.3
-
10
-
-
0031790538
-
Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
-
Suzuki M, Rappe MS, Giovannoni SJ (1998) Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl Environ Microbiol 64: 4522-4529. (Pubitemid 28538028)
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.11
, pp. 4522-4529
-
-
Suzuki, M.1
Rappe, M.S.2
Giovannoni, S.J.3
-
11
-
-
0242384034
-
Review and re-analysis of domain-specific 16S primers
-
DOI 10.1016/j.mimet.2003.08.009
-
Baker GC, Smith JJ, Cowan DA (2003) Review and re-analysis of domainspecific 16S primers. J Microbiol Meth 55: 541-555. (Pubitemid 37357207)
-
(2003)
Journal of Microbiological Methods
, vol.55
, Issue.3
, pp. 541-555
-
-
Baker, G.C.1
Smith, J.J.2
Cowan, D.A.3
-
12
-
-
84871808499
-
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and nextgeneration sequencing-based diversity studies
-
Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, et al. (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and nextgeneration sequencing-based diversity studies. Nucleic Acids Res 41: e1.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Klindworth, A.1
Pruesse, E.2
Schweer, T.3
Peplies, J.4
Quast, C.5
-
13
-
-
68549130740
-
Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys
-
Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, et al. (2009) Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol 75: 5227-5236.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5227-5236
-
-
Youssef, N.1
Sheik, C.S.2
Krumholz, L.R.3
Najar, F.Z.4
Roe, B.A.5
-
14
-
-
84885047742
-
The choice of PCR primers has great impact on assessments of bacterial community diversity and dynamics in a wastewater treatment plant
-
Fredriksson NJ, Hermansson M, Wilen BM (2013) The choice of PCR primers has great impact on assessments of bacterial community diversity and dynamics in a wastewater treatment plant. PLoS One 8: e76431.
-
(2013)
PLoS One
, vol.8
-
-
Fredriksson, N.J.1
Hermansson, M.2
Wilen, B.M.3
-
15
-
-
84866065801
-
Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing
-
Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, et al. (2012) Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing. PLoS One 7: e44224.
-
(2012)
PLoS One
, vol.7
-
-
Lee, C.K.1
Herbold, C.W.2
Polson, S.W.3
Wommack, K.E.4
Williamson, S.J.5
-
16
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6: e27310.
-
(2011)
PLoS One
, vol.6
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
17
-
-
84876259793
-
Diversity and heritability of the maize rhizosphere microbiome under field conditions
-
Peiffer JA, Spor A, Koren O, Jin Z, Tringe SG, et al. (2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc Natl Acad Sci U S A 110: 6548-6553.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 6548-6553
-
-
Peiffer, J.A.1
Spor, A.2
Koren, O.3
Jin, Z.4
Tringe, S.G.5
-
18
-
-
79959677258
-
Target region selection is a critical determinant of community fingerprints generated by 16S pyrosequencing
-
Kumar PS, Brooker MR, Dowd SE, Camerlengo T (2011) Target region selection is a critical determinant of community fingerprints generated by 16S pyrosequencing. PLoS One 6: e20956.
-
(2011)
PLoS One
, vol.6
-
-
Kumar, P.S.1
Brooker, M.R.2
Dowd, S.E.3
Camerlengo, T.4
-
19
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, et al. (2010) Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J 4: 642-647.
-
(2010)
ISME J
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
Kunin, V.2
Wrighton, K.C.3
Zvenigorodsky, N.4
Chen, F.5
-
20
-
-
69249109724
-
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
-
Claesson MJ, O'Sullivan O, Wang Q, Nikkila J, Marchesi JR, et al. (2009) Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS One 4: e6669.
-
(2009)
PLoS One
, vol.4
-
-
Claesson, M.J.1
O'Sullivan, O.2
Wang, Q.3
Nikkila, J.4
Marchesi, J.R.5
-
21
-
-
78650453707
-
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
-
Claesson MJ, Wang Q, O'Sullivan O, Greene-Diniz R, Cole JR, et al. (2010) Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res 38: e200.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Claesson, M.J.1
Wang, Q.2
O'Sullivan, O.3
Greene-Diniz, R.4
Cole, J.R.5
-
22
-
-
84872323101
-
Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets
-
Cai L, Ye L, Tong AH, Lok S, Zhang T (2013) Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets. PLoS One 8: e53649.
-
(2013)
PLoS One
, vol.8
-
-
Cai, L.1
Ye, L.2
Tong, A.H.3
Lok, S.4
Zhang, T.5
-
23
-
-
84877765843
-
Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing
-
Guo F, Zhang T (2013) Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing. Appl Microbiol Biotechnol 97: 4607-4616.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 4607-4616
-
-
Guo, F.1
Zhang, T.2
-
24
-
-
84861979991
-
Characterizing microbial communities through space and time
-
Gonzalez A, King A, Robeson II MS, Song S, Shade A, et al. (2012) Characterizing microbial communities through space and time. Curr Opin Biotechnol 23: 431-436.
-
(2012)
Curr Opin Biotechnol
, vol.23
, pp. 431-436
-
-
Gonzalez, A.1
King, A.2
Robeson II, M.S.3
Song, S.4
Shade, A.5
-
25
-
-
84880917983
-
A meta-analysis of changes in bacterial and archaeal communities with time
-
Shade A, Caporaso JG, Handelsman J, Knight R, Fierer N (2013) A meta-analysis of changes in bacterial and archaeal communities with time. ISME J 7: 1493-1506.
-
(2013)
ISME J
, vol.7
, pp. 1493-1506
-
-
Shade, A.1
Caporaso, J.G.2
Handelsman, J.3
Knight, R.4
Fierer, N.5
-
26
-
-
80053126577
-
Fine-scale bacterial community dynamics and the taxa-time relationship within a full-scale activated sludge bioreactor
-
Wells GF, Park HD, Eggleston B, Francis CA, Criddle CS (2011) Fine-scale bacterial community dynamics and the taxa-time relationship within a full-scale activated sludge bioreactor. Water Res 45: 5476-5488.
-
(2011)
Water Res
, vol.45
, pp. 5476-5488
-
-
Wells, G.F.1
Park, H.D.2
Eggleston, B.3
Francis, C.A.4
Criddle, C.S.5
-
27
-
-
0032938864
-
Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community
-
Eichner CA, Erb RW, Timmis KN, Wagner-Dobler I (1999) Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl Environ Microbiol 65: 102-109. (Pubitemid 29029625)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.1
, pp. 102-109
-
-
Eichner, C.A.1
Erb, R.W.2
Timmis, K.N.3
Wagner-Dobler, I.4
-
28
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
30
-
-
84891787231
-
Ribosomal Database Project: Data and tools for high throughput rRNA analysis
-
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, et al. (2014) Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res 42: D633-D642.
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Cole, J.R.1
Wang, Q.2
Fish, J.A.3
Chai, B.4
McGarrell, D.M.5
-
31
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
DOI 10.1128/AEM.71.12.8228-8235.2005
-
Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235. (Pubitemid 41803949)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
32
-
-
43449125882
-
How to get more out of molecular fingerprints: Practical tools for microbial ecology
-
DOI 10.1111/j.1462-2920.2008.01572.x
-
Marzorati M, Wittebolle L, Boon N, Daffonchio D, Verstraete W (2008) How to get more out of molecular fingerprints: practical tools for microbial ecology. Environ Microbiol 10: 1571-1581. (Pubitemid 351670255)
-
(2008)
Environmental Microbiology
, vol.10
, Issue.6
, pp. 1571-1581
-
-
Marzorati, M.1
Wittebolle, L.2
Boon, N.3
Daffonchio, D.4
Verstraete, W.5
-
33
-
-
0042815050
-
Canonical analysis of principal coordinates: A useful method of constrained ordination for ecology
-
Anderson MJ, Willis TJ (2003) Canonical analysis of principal coordinates: a useful method of constrained ordination for ecology. Ecology 84: 511-525. (Pubitemid 36893087)
-
(2003)
Ecology
, vol.84
, Issue.2
, pp. 511-525
-
-
Anderson, M.J.1
Willis, T.J.2
-
34
-
-
0033754288
-
Phylogenetic analysis of and oligonucleotide probe development for eikelboom type 021N filamentous bacteria isolated from bulking activated sludge
-
Kanagawa T, Kamagata Y, Aruga S, Kohno T, Horn M, et al. (2000) Phylogenetic analysis of and oligonucleotide probe development for eikelboom type 021N filamentous bacteria isolated from bulking activated sludge. Appl Environ Microbiol 66: 5043-5052.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5043-5052
-
-
Kanagawa, T.1
Kamagata, Y.2
Aruga, S.3
Kohno, T.4
Horn, M.5
-
35
-
-
73349136275
-
Use of fluorescence in situ hybridization and the daime image analysis program for the cultivation-independent quantification of microorganisms in environmental and medical samples
-
pdb prot5253
-
Daims H (2009) Use of fluorescence in situ hybridization and the daime image analysis program for the cultivation-independent quantification of microorganisms in environmental and medical samples. Cold Spring Harb Protoc 2009: pdb prot5253.
-
(2009)
Cold Spring Harb Protoc
, vol.2009
-
-
Daims, H.1
-
36
-
-
0027339723
-
Optimizing fluorescent in sit hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
-
DOI 10.1002/cyto.990140205
-
Wallner G, Amann R, Beisker W (1993) Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14: 136-143. (Pubitemid 23042736)
-
(1993)
Cytometry
, vol.14
, Issue.2
, pp. 136-143
-
-
Wallner, G.1
Amann, R.2
Beisker, W.3
-
37
-
-
84864663408
-
Soil bacterial diversity screening using single 16S rRNA gene V regions coupled with multi-million read generating sequencing technologies
-
Vasileiadis S, Puglisi E, Arena M, Cappa F, Cocconcelli PS, et al. (2012) Soil bacterial diversity screening using single 16S rRNA gene V regions coupled with multi-million read generating sequencing technologies. PLoS One 7: e42671.
-
(2012)
PLoS One
, vol.7
-
-
Vasileiadis, S.1
Puglisi, E.2
Arena, M.3
Cappa, F.4
Cocconcelli, P.S.5
-
38
-
-
84855999255
-
Species-time relationships for bacteria
-
Hirsch PR, Ogilvie LA, editors. Norwich, UK: Horizon Scientific Press
-
Oliver A, Lilley AK, van der Gast CJ (2011) Species-time relationships for bacteria. In: Hirsch PR, Ogilvie LA, editors. Microbial Ecological Theory: From Individuals to Ecosystems. Norwich, UK: Horizon Scientific Press.
-
(2011)
Microbial Ecological Theory: From Individuals to Ecosystems
-
-
Oliver, A.1
Lilley, A.K.2
Van Der Gast, C.J.3
-
39
-
-
23644438060
-
Evidence for a general species-time-area relationship
-
Adler PB, White EP, Lauenroth WK, Kaufman DM, Rassweiler A, et al. (2005) Evidence for a general species-time-area relationship. Ecology 86: 2032-2039. (Pubitemid 41117471)
-
(2005)
Ecology
, vol.86
, Issue.8
, pp. 2032-2039
-
-
Adler, P.B.1
White, E.P.2
Lauenroth, W.K.3
Kaufman, D.M.4
Rassweiler, A.5
Rusak, J.A.6
-
40
-
-
78650348100
-
Temporal turnover and the maintenance of diversity in ecological assemblages
-
Magurran AE, Henderson PA (2010) Temporal turnover and the maintenance of diversity in ecological assemblages. Philos Trans R Soc Lond B Biol Sci 365: 3611-3620.
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, pp. 3611-3620
-
-
Magurran, A.E.1
Henderson, P.A.2
-
41
-
-
77952481263
-
Nonrandom assembly of bacterial populations in activated sludge flocs
-
Ayarza JM, Guerrero LD, Erijman L (2010) Nonrandom assembly of bacterial populations in activated sludge flocs. Microb Ecol 59: 436-444.
-
(2010)
Microb Ecol
, vol.59
, pp. 436-444
-
-
Ayarza, J.M.1
Guerrero, L.D.2
Erijman, L.3
-
42
-
-
59349111439
-
Microbial community dynamics in replicate membrane bioreactors - natural reproducible fluctuations
-
Falk MW, Song KG, Matiasek MG, Wuertz S (2009) Microbial community dynamics in replicate membrane bioreactors - natural reproducible fluctuations. Water Res 43: 842-852.
-
(2009)
Water Res
, vol.43
, pp. 842-852
-
-
Falk, M.W.1
Song, K.G.2
Matiasek, M.G.3
Wuertz, S.4
-
43
-
-
0344721475
-
How stable is stable? Function versus community composition
-
Fernandez A, Huang S, Seston S, Xing J, Hickey R, et al. (1999) How stable is stable? Function versus community composition. Appl Environ Microbiol 65: 3697-3704. (Pubitemid 29399005)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.8
, pp. 3697-3704
-
-
Fernandez, A.1
Huang, S.2
Seston, S.3
Xing, J.4
Hickey, R.5
Criddle, C.6
Tiedje, J.7
-
44
-
-
0036025191
-
Microbial population dynamics in laboratory-scale activated sludge reactors
-
Kaewpipat K, Grady CP Jr (2002) Microbial population dynamics in laboratory-scale activated sludge reactors. Water Sci Technol 46: 19-27. (Pubitemid 34975595)
-
(2002)
Water Science and Technology
, vol.46
, Issue.1-2
, pp. 19-27
-
-
Kaewpipat, K.1
Grady Jr., C.P.L.2
-
45
-
-
0036131832
-
Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE
-
DOI 10.1016/S0043-1354(01)00277-9, PII S0043135401002779
-
LaPara TM, Nakatsu CH, Pantea LM, Alleman JE (2002) Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE. Water Res 36: 638-646. (Pubitemid 33103754)
-
(2002)
Water Research
, vol.36
, Issue.3
, pp. 638-646
-
-
LaPara, T.M.1
Nakatsu, C.H.2
Pantea, L.M.3
Alleman, J.E.4
-
46
-
-
77956905350
-
Bacterial community dynamics in two full-scale wastewater treatment systems with functional stability
-
Wang X, Wen X, Criddle C, Yan H, Zhang Y, et al. (2010) Bacterial community dynamics in two full-scale wastewater treatment systems with functional stability. J Appl Microbiol 109: 1218-1226.
-
(2010)
J Appl Microbiol
, vol.109
, pp. 1218-1226
-
-
Wang, X.1
Wen, X.2
Criddle, C.3
Yan, H.4
Zhang, Y.5
-
47
-
-
69949084247
-
Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: Betaproteobacterial dynamics and low relative abundance of Crenarchaea
-
Wells GF, Park HD, Yeung CH, Eggleston B, Francis CA, et al. (2009) Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: betaproteobacterial dynamics and low relative abundance of Crenarchaea. Environ Microbiol 11: 2310-2328.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2310-2328
-
-
Wells, G.F.1
Park, H.D.2
Yeung, C.H.3
Eggleston, B.4
Francis, C.A.5
-
48
-
-
79952771096
-
Bacterial community structures are unique and resilient in full-scale bioenergy systems
-
Werner JJ, Knights D, Garcia ML, Scalfone NB, Smith S, et al. (2011) Bacterial community structures are unique and resilient in full-scale bioenergy systems. Proc Natl Acad Sci U S A 108: 4158-4163.
-
(2011)
Proc Natl Acad Sci U S a
, vol.108
, pp. 4158-4163
-
-
Werner, J.J.1
Knights, D.2
Garcia, M.L.3
Scalfone, N.B.4
Smith, S.5
-
49
-
-
43449117763
-
Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors
-
DOI 10.1111/j.1462-2920.2007.01550.x
-
van der Gast CJ, Ager D, Lilley AK (2008) Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors. Environ Microbiol 10: 1411-1418. (Pubitemid 351670240)
-
(2008)
Environmental Microbiology
, vol.10
, Issue.6
, pp. 1411-1418
-
-
Van Der, G.C.J.1
Ager, D.2
Lilley, A.K.3
-
50
-
-
79953750832
-
Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly
-
Ayarza JM, Erijman L (2011) Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly. Microb Ecol 61: 486-495.
-
(2011)
Microb Ecol
, vol.61
, pp. 486-495
-
-
Ayarza, J.M.1
Erijman, L.2
-
51
-
-
79955520101
-
The underpinnings of the relationship of species richness with space and time
-
Scheiner SM, Chiarucci A, Fox GA, Helmus MR, McGlinn DJ, et al. (2011) The underpinnings of the relationship of species richness with space and time. Ecol Monogr 81: 195-213.
-
(2011)
Ecol Monogr
, vol.81
, pp. 195-213
-
-
Scheiner, S.M.1
Chiarucci, A.2
Fox, G.A.3
Helmus, M.R.4
McGlinn, D.J.5
-
52
-
-
33748353399
-
Annually reoccurring bacterial communities are predictable from ocean conditions
-
DOI 10.1073/pnas.0602399103
-
Fuhrman JA, Hewson I, Schwalbach MS, Steele JA, Brown MV, et al. (2006) Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci U S A 103: 13104-13109. (Pubitemid 44338923)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.35
, pp. 13104-13109
-
-
Fuhrman, J.A.1
Hewson, I.2
Schwalbach, M.S.3
Steele, J.A.4
Brown, M.V.5
Naeem, S.6
-
53
-
-
84881420104
-
Seasonality and environmental control of freshwater SAR11 (LD12) in a temperate lake (Lake Erken, Sweden)
-
Heinrich F, Eiler A, Bertilsson S (2013) Seasonality and environmental control of freshwater SAR11 (LD12) in a temperate lake (Lake Erken, Sweden). Aq Microb Ecol 70: 33-44.
-
(2013)
Aq Microb Ecol
, vol.70
, pp. 33-44
-
-
Heinrich, F.1
Eiler, A.2
Bertilsson, S.3
-
54
-
-
77952499443
-
Seasonal and episodic lake mixing stimulate differential planktonic bacterial dynamics
-
Shade A, Chiu C-Y, McMahon KD (2010) Seasonal and episodic lake mixing stimulate differential planktonic bacterial dynamics. Microb Ecol 59: 546-554.
-
(2010)
Microb Ecol
, vol.59
, pp. 546-554
-
-
Shade, A.1
Chiu, C.-Y.2
McMahon, K.D.3
-
55
-
-
84874384831
-
General and rare bacterial taxa demonstrating different temporal dynamic patterns in an activated sludge bioreactor
-
Kim TS, Jeong JY, Wells GF, Park HD (2012) General and rare bacterial taxa demonstrating different temporal dynamic patterns in an activated sludge bioreactor. Appl Microbiol Biotechnol 97: 1755-1765.
-
(2012)
Appl Microbiol Biotechnol
, vol.97
, pp. 1755-1765
-
-
Kim, T.S.1
Jeong, J.Y.2
Wells, G.F.3
Park, H.D.4
-
56
-
-
33746622874
-
An evaluation of full-scale activated sludge dynamics using microbial fatty acid analysis
-
Werker AG (2006) An evaluation of full-scale activated sludge dynamics using microbial fatty acid analysis. Water Sci Technol 54: 11-19.
-
(2006)
Water Sci Technol
, vol.54
, pp. 11-19
-
-
Werker, A.G.1
-
57
-
-
84878512559
-
Industrial activated sludge exhibit unique bacterial community composition at high taxonomic ranks
-
Ibarbalz FM, Figuerola EL, Erijman L (2013) Industrial activated sludge exhibit unique bacterial community composition at high taxonomic ranks. Water Res 47: 3854-3864.
-
(2013)
Water Res
, vol.47
, pp. 3854-3864
-
-
Ibarbalz, F.M.1
Figuerola, E.L.2
Erijman, L.3
-
58
-
-
84905392797
-
Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants
-
doi:10.1111/1462-2920.12355
-
Ju F, Xia Y, Guo F, Wang Z, Zhang T (2014) Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants. Environ Microbiol doi:10.1111/1462-2920.12355
-
(2014)
Environ Microbiol
-
-
Ju, F.1
Xia, Y.2
Guo, F.3
Wang, Z.4
Zhang, T.5
-
59
-
-
84888840669
-
Substrate type drives variation in reactor microbiomes of anaerobic digesters
-
Zhang W, Werner JJ, Agler MT, Angenent LT (2013) Substrate type drives variation in reactor microbiomes of anaerobic digesters. Bioresour Technol 151: 397-401.
-
(2013)
Bioresour Technol
, vol.151
, pp. 397-401
-
-
Zhang, W.1
Werner, J.J.2
Agler, M.T.3
Angenent, L.T.4
|