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Volumn 97, Issue 4, 2013, Pages 1755-1765

General and rare bacterial taxa demonstrating different temporal dynamic patterns in an activated sludge bioreactor

Author keywords

Activated sludge; Pyrosequencing; Rare species; Species time relationship; Temporal dynamics

Indexed keywords

ACTIVATED SLUDGE; PYROSEQUENCING; RARE SPECIES; SPECIES TIME RELATIONSHIP; TEMPORAL DYNAMICS;

EID: 84874384831     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-012-4002-7     Document Type: Article
Times cited : (88)

References (42)
  • 1
    • 0042128300 scopus 로고    scopus 로고
    • The power of time: Spatiotemporal scaling of species diversity
    • 10.1046/j.1461-0248.2003.00497.x
    • Adler PB, Lauenroth WK (2003) The power of time: spatiotemporal scaling of species diversity. Ecol Lett 6(8):749-756
    • (2003) Ecol Lett , vol.6 , Issue.8 , pp. 749-756
    • Adler, P.B.1    Lauenroth, W.K.2
  • 3
    • 79953750832 scopus 로고    scopus 로고
    • Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly
    • 10.1007/s00248-010-9762-y
    • Ayarza JM, Erijman L (2010) Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly. Microb Ecol 61(3):486-495
    • (2010) Microb Ecol , vol.61 , Issue.3 , pp. 486-495
    • Ayarza, J.M.1    Erijman, L.2
  • 4
    • 0038482137 scopus 로고    scopus 로고
    • Diversity and dynamics of microbial communities in engineered environments and their implications for process stability
    • 10.1016/S0958-1669(03)00065-X 1:CAS:528:DC%2BD3sXltVSqsrY%3D
    • Briones A, Raskin L (2003) Diversity and dynamics of microbial communities in engineered environments and their implications for process stability. Curr Opin Biotechnol 14(3):270-276
    • (2003) Curr Opin Biotechnol , vol.14 , Issue.3 , pp. 270-276
    • Briones, A.1    Raskin, L.2
  • 5
    • 79961239913 scopus 로고    scopus 로고
    • Activity of abundant and rare bacteria in a coastal ocean
    • 10.1073/pnas.1101405108 1:CAS:528:DC%2BC3MXhtVenu7bL
    • Campbell BJ, Yu L, Heidelberg JF, Kirchman DL (2011) Activity of abundant and rare bacteria in a coastal ocean. Proc Natl Acad Sci U S A 108(31):12776-12781
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.31 , pp. 12776-12781
    • Campbell, B.J.1    Yu, L.2    Heidelberg, J.F.3    Kirchman, D.L.4
  • 6
    • 69249109724 scopus 로고    scopus 로고
    • Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
    • 10.1371/journal.pone.0006669
    • Claesson MJ, O'Sullivan O, Wang Q, Nikkilä J, Marchesi JR, Smidt H, de Vos WM, Ross RP, O'Toole PW (2009) Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. Plos One 4(8):e6669
    • (2009) Plos One , vol.4 , Issue.8 , pp. 6669
    • Claesson, M.J.1    O'Sullivan, O.2    Wang, Q.3    Nikkilä, J.4    Marchesi, J.R.5    Smidt, H.6    De Vos, W.M.7    Ross, R.P.8    O'Toole, P.W.9
  • 7
    • 41949103084 scopus 로고    scopus 로고
    • Activated sludge operational regime has significant impact on the type of nitrifying community and its nitrification rates
    • 10.1016/j.watres.2007.12.018
    • Dytczaka MA, Londryb KL, Oleszkiewicza JA (2008) Activated sludge operational regime has significant impact on the type of nitrifying community and its nitrification rates. Water Res 42(8-9):2320-2328
    • (2008) Water Res , vol.42 , Issue.8-9 , pp. 2320-2328
    • Dytczaka, M.A.1    Londryb, K.L.2    Oleszkiewicza, J.A.3
  • 8
    • 42349100152 scopus 로고    scopus 로고
    • Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes
    • 10.1128/AEM.02272-07 1:CAS:528:DC%2BD1cXltVOhsLc%3D
    • Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA, Olsen GJ (2008) Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol 74(8):2461-2470
    • (2008) Appl Environ Microbiol , vol.74 , Issue.8 , pp. 2461-2470
    • Frank, J.A.1    Reich, C.I.2    Sharma, S.3    Weisbaum, J.S.4    Wilson, B.A.5    Olsen, G.J.6
  • 9
    • 76049126745 scopus 로고    scopus 로고
    • Ecology of the rare microbial biosphere of the Arctic Ocean
    • 10.1073/pnas.0908284106 1:CAS:528:DC%2BC3cXmtlarug%3D%3D
    • Galand P, Casamayor E, Kirchman D, Lovejoy C (2009) Ecology of the rare microbial biosphere of the Arctic Ocean. Proc Natl Acad Sci USA 106(52):22427-22432
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.52 , pp. 22427-22432
    • Galand, P.1    Casamayor, E.2    Kirchman, D.3    Lovejoy, C.4
  • 12
    • 80052287608 scopus 로고    scopus 로고
    • Microbial community analysis and identification of alternative host-specific fecal indicators in fecal and river water samples using pyrosequencing
    • 10.1007/s12275-011-0530-6
    • Jeong J-Y, Park H-D, Lee K-H, Weon H-Y, Ka J-O (2011) Microbial community analysis and identification of alternative host-specific fecal indicators in fecal and river water samples using pyrosequencing. J Microbiol 49(4):585-594
    • (2011) J Microbiol , vol.49 , Issue.4 , pp. 585-594
    • Jeong, J.-Y.1    Park, H.-D.2    Lee, K.-H.3    Weon, H.-Y.4    Ka, J.-O.5
  • 13
    • 0036025191 scopus 로고    scopus 로고
    • Microbial population dynamics in laboratory-scale activated sludge reactors
    • 1:CAS:528:DC%2BD3sXhsFaisg%3D%3D
    • Kaewpipat K, Grady CPL (2002) Microbial population dynamics in laboratory-scale activated sludge reactors. Water Sci Technol 46(1-2):19-27
    • (2002) Water Sci Technol , vol.46 , Issue.1-2 , pp. 19-27
    • Kaewpipat, K.1    Grady, C.P.L.2
  • 14
    • 37449020416 scopus 로고    scopus 로고
    • Structure and function of the microbial community in a full-scale enhanced biological phosphorus removal plant
    • 10.1099/mic.0.2007/007245-0 1:CAS:528:DC%2BD1cXmtVU%3D
    • Kong Y, Xia Y, Nielsen JL, Nielsen PH (2007) Structure and function of the microbial community in a full-scale enhanced biological phosphorus removal plant. Microbiology 153:4061-4073
    • (2007) Microbiology , vol.153 , pp. 4061-4073
    • Kong, Y.1    Xia, Y.2    Nielsen, J.L.3    Nielsen, P.H.4
  • 15
    • 78650824224 scopus 로고    scopus 로고
    • Bacterial community composition and diversity of a full-scale integrated fixed-film activated sludge system as investigated by pyrosequencing
    • Kwon S, Kim TS, Yu GH, Jung JH, Park HD (2010) Bacterial community composition and diversity of a full-scale integrated fixed-film activated sludge system as investigated by pyrosequencing. J Microbiol Biotechnol 20(12):1717-1723
    • (2010) J Microbiol Biotechnol , vol.20 , Issue.12 , pp. 1717-1723
    • Kwon, S.1    Kim, T.S.2    Yu, G.H.3    Jung, J.H.4    Park, H.D.5
  • 18
    • 70249103518 scopus 로고    scopus 로고
    • Characterization of bacterial diversity in two aerated lagoons of a wastewater treatment plant using PCR-DGGE analysis
    • 10.1016/j.micres.2007.06.005
    • Moura A, Tacao M, Henriques I, Dias J, Ferreira P, Correia A (2009) Characterization of bacterial diversity in two aerated lagoons of a wastewater treatment plant using PCR-DGGE analysis. Microbiol Res 164(5):560-569
    • (2009) Microbiol Res , vol.164 , Issue.5 , pp. 560-569
    • Moura, A.1    Tacao, M.2    Henriques, I.3    Dias, J.4    Ferreira, P.5    Correia, A.6
  • 19
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • 1:CAS:528:DyaK3sXit1Kktrk%3D
    • Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59(3):695-700
    • (1993) Appl Environ Microbiol , vol.59 , Issue.3 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 20
    • 0034967394 scopus 로고    scopus 로고
    • Development of a novel method for operating magnetic particles, magtration technology, and its use for automating nucleic acid purification
    • 1:CAS:528:DC%2BD3MXlvF2nsbw%3D
    • Obata K, Segawa O, Yakabe M, Ishida Y, Kuroita T, Ikeda K, Kawakami B, Kawamura Y, Yohda M, Matsunaga T, Tajima H (2001) Development of a novel method for operating magnetic particles, magtration technology, and its use for automating nucleic acid purification. J Biosci Bioeng 91(5):500-503
    • (2001) J Biosci Bioeng , vol.91 , Issue.5 , pp. 500-503
    • Obata, K.1    Segawa, O.2    Yakabe, M.3    Ishida, Y.4    Kuroita, T.5    Ikeda, K.6    Kawakami, B.7    Kawamura, Y.8    Yohda, M.9    Matsunaga, T.10    Tajima, H.11
  • 22
    • 3342882929 scopus 로고    scopus 로고
    • Evaluating the effect of dissolved oxygen on ammonia-oxidizing bacterial communities in activated sludge
    • 10.1016/j.watres.2004.04.047 1:CAS:528:DC%2BD2cXlvFalurw%3D
    • Park HD, Noguera DR (2004) Evaluating the effect of dissolved oxygen on ammonia-oxidizing bacterial communities in activated sludge. Water Res 38(14-15):3275-3286
    • (2004) Water Res , vol.38 , Issue.14-15 , pp. 3275-3286
    • Park, H.D.1    Noguera, D.R.2
  • 23
    • 33744745905 scopus 로고    scopus 로고
    • Marine microbial diversity: Can it be determined?
    • 10.1016/j.tim.2006.04.007 1:CAS:528:DC%2BD28XltlGqs7w%3D
    • Pedros-Alio C (2006) Marine microbial diversity: can it be determined? Trends Microbiol 14(6):257-263
    • (2006) Trends Microbiol , vol.14 , Issue.6 , pp. 257-263
    • Pedros-Alio, C.1
  • 24
    • 0001103434 scopus 로고
    • Time and space and the variation of species
    • 10.2307/1931793
    • Preston FW (1960) Time and space and the variation of species. Ecology 41(4):611-627
    • (1960) Ecology , vol.41 , Issue.4 , pp. 611-627
    • Preston, F.W.1
  • 26
    • 0024180269 scopus 로고
    • Extinction, turnover and species diversity in an experimentally fragmented Californina annual grassland
    • Robinson GR, Quinn JF (1988) extinction, turnover and species diversity in an experimentally fragmented Californina annual grassland. Oecologia 76(1):71-82
    • (1988) Oecologia , vol.76 , Issue.1 , pp. 71-82
    • Robinson, G.R.1    Quinn, J.F.2
  • 28
    • 73449146256 scopus 로고    scopus 로고
    • Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
    • 10.1038/ismej.2009.83
    • Roh SW, Kim K-H, Nam Y-D, Chang H-W, Park E-J, Bae J-W (2009) Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. ISME J 4:1-16
    • (2009) ISME J , vol.4 , pp. 1-16
    • Roh, S.W.1    Kim, K.-H.2    Nam, Y.-D.3    Chang, H.-W.4    Park, E.-J.5    Bae, J.-W.6
  • 29
    • 79953742946 scopus 로고    scopus 로고
    • Diversity of dominant bacterial taxa in activated sludge promotes functional resistance following toxic shock loading
    • 10.1007/s00248-010-9783-6 1:CAS:528:DC%2BC3MXksVCnsrs%3D
    • Saikaly PE, Oerther DB (2011) Diversity of dominant bacterial taxa in activated sludge promotes functional resistance following toxic shock loading. Microb Ecol 61(3):557-567
    • (2011) Microb Ecol , vol.61 , Issue.3 , pp. 557-567
    • Saikaly, P.E.1    Oerther, D.B.2
  • 30
    • 62149125541 scopus 로고    scopus 로고
    • Molecular Diversity of a North Carolina Wastewater Treatment Plant as Revealed by Pyrosequencing
    • 10.1128/AEM.01210-08 1:CAS:528:DC%2BD1MXjsFKgsbk%3D
    • Sanapareddy N, Hamp TJ, Gonzalez LC, Hilger HA, Fodor AA, Clinton SM (2009) Molecular Diversity of a North Carolina Wastewater Treatment Plant as Revealed by Pyrosequencing. Appl Environ Microbiol 75(6):1688-1696
    • (2009) Appl Environ Microbiol , vol.75 , Issue.6 , pp. 1688-1696
    • Sanapareddy, N.1    Hamp, T.J.2    Gonzalez, L.C.3    Hilger, H.A.4    Fodor, A.A.5    Clinton, S.M.6
  • 32
    • 0023490860 scopus 로고
    • High population persistence in a system with high turnover
    • 10.1038/330474a0
    • Schoener TW, Spiller DA (1987) High population persistence in a system with high turnover. Nature 330(6147):474-477
    • (1987) Nature , vol.330 , Issue.6147 , pp. 474-477
    • Schoener, T.W.1    Spiller, D.A.2
  • 33
    • 33644843833 scopus 로고    scopus 로고
    • Quantifying the roles of immigration and chance in shaping prokaryote community structure
    • 10.1111/j.1462-2920.2005.00956.x
    • Sloan WT, Lunn M, Woodcock W, Head IM, Nee S, Curtis TP (2006) Quantifying the roles of immigration and chance in shaping prokaryote community structure. Environ Microbiol 8(4):732-740
    • (2006) Environ Microbiol , vol.8 , Issue.4 , pp. 732-740
    • Sloan, W.T.1    Lunn, M.2    Woodcock, W.3    Head, I.M.4    Nee, S.5    Curtis, T.P.6
  • 34
    • 1342332575 scopus 로고    scopus 로고
    • Temporal dynamics and degradation activity of an bacterial inoculum for treating waste metal-working fluid
    • 10.1111/j.1462-2920.2004.00566.x
    • van der Gast CJ, Whiteley AS, Thompson IP (2004) Temporal dynamics and degradation activity of an bacterial inoculum for treating waste metal-working fluid. Environ Microbiol 6(3):254-263
    • (2004) Environ Microbiol , vol.6 , Issue.3 , pp. 254-263
    • Van Der Gast, C.J.1    Whiteley, A.S.2    Thompson, I.P.3
  • 35
    • 43449117763 scopus 로고    scopus 로고
    • Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors
    • 10.1111/j.1462-2920.2007.01550.x
    • van der Gast CJ, Ager D, Lilley AK (2008) Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors. Environ Microbiol 10(6):1411-1418
    • (2008) Environ Microbiol , vol.10 , Issue.6 , pp. 1411-1418
    • Van Der Gast, C.J.1    Ager, D.2    Lilley, A.K.3
  • 36
    • 0036624935 scopus 로고    scopus 로고
    • Bacterial community composition and function in sewage treatment systems
    • 10.1016/S0958-1669(02)00315-4 1:CAS:528:DC%2BD38XkvVemsLs%3D
    • Wagner M, Loy A (2002) Bacterial community composition and function in sewage treatment systems. Curr Opin Biotechnol 13(3):218-227
    • (2002) Curr Opin Biotechnol , vol.13 , Issue.3 , pp. 218-227
    • Wagner, M.1    Loy, A.2
  • 37
    • 0027299353 scopus 로고
    • Probing activated sludge with oligonucleotides specific for proteobacteria: Inadequacy of culture-dependent methods for describing microbial community structure
    • 1:CAS:528:DyaK3sXktlels7s%3D
    • Wagner M, Amann R, Lemmer H, Schleifer KH (1993) Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure. Appl Environ Microbiol 59(5):1520-1525
    • (1993) Appl Environ Microbiol , vol.59 , Issue.5 , pp. 1520-1525
    • Wagner, M.1    Amann, R.2    Lemmer, H.3    Schleifer, K.H.4
  • 38
    • 34548293679 scopus 로고    scopus 로고
    • Naive bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • 10.1128/AEM.00062-07 1:CAS:528:DC%2BD2sXpsleqtrc%3D
    • Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73(16):5261-5267
    • (2007) Appl Environ Microbiol , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 39
    • 69949084247 scopus 로고    scopus 로고
    • Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: Betaproteobacterial dynamics and low relative abundance of Crenarchaea
    • 10.1111/j.1462-2920.2009.01958.x 1:CAS:528:DC%2BD1MXht1Gnt77O
    • Wells GF, Park HD, Yeung CH, Eggleston B, Francis CA, Criddle CS (2009) Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: betaproteobacterial dynamics and low relative abundance of Crenarchaea. Environ Microbiol 11(9):2310-2328
    • (2009) Environ Microbiol , vol.11 , Issue.9 , pp. 2310-2328
    • Wells, G.F.1    Park, H.D.2    Yeung, C.H.3    Eggleston, B.4    Francis, C.A.5    Criddle, C.S.6
  • 40
    • 80053126577 scopus 로고    scopus 로고
    • Fine-scale bacterial community dynamics and the taxa-time relationship within a full-scale activated sludge bioreactor
    • 10.1016/j.watres.2011.08.006 1:CAS:528:DC%2BC3MXht1WltL3I
    • Wells GF, Park HD, Eggleston B, Francis CA, Criddle CS (2011) Fine-scale bacterial community dynamics and the taxa-time relationship within a full-scale activated sludge bioreactor. Water Res 45(17):5476-5488
    • (2011) Water Res , vol.45 , Issue.17 , pp. 5476-5488
    • Wells, G.F.1    Park, H.D.2    Eggleston, B.3    Francis, C.A.4    Criddle, C.S.5


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