메뉴 건너뛰기




Volumn 108, Issue 10, 2011, Pages 4158-4163

Bacterial community structures are unique and resilient in full-scale bioenergy systems

Author keywords

Community dynamics; Community function; Digester; Sludge; UniFrac

Indexed keywords

RNA 16S;

EID: 79952771096     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1015676108     Document Type: Article
Times cited : (401)

References (33)
  • 1
    • 4344656907 scopus 로고    scopus 로고
    • Production of bioenergy and biochemicals from industrial and agricultural wastewater
    • DOI 10.1016/j.tibtech.2004.07.001, PII S0167779904001933
    • Angenent LT, Karim K, Al-Dahhan MH, Wrenn BA, Domíguez-Espinosa R (2004) Production of bioenergy and biochemicals from industrial and agricultural wastewater. Trends Biotechnol 22:477-485. (Pubitemid 39141162)
    • (2004) Trends in Biotechnology , vol.22 , Issue.9 , pp. 477-485
    • Angenent, L.T.1    Karim, K.2    Al-Dahhan, M.H.3    Wrenn, B.A.4    Domiguez-Espinosa, R.5
  • 2
    • 0028887804 scopus 로고
    • Anaerobic digestion and wastewater treatment systems
    • Lettinga G (1995) Anaerobic digestion and wastewater treatment systems. Antonie van Leeuwenhoek 67:3-28.
    • (1995) Antonie Van Leeuwenhoek , vol.67 , pp. 3-28
    • Lettinga, G.1
  • 3
    • 33645029463 scopus 로고    scopus 로고
    • The effects of operational and environmental variations on anaerobic wastewater treatment systems: A review
    • Leitão RC, van Haandel AC, Zeeman G, Lettinga G (2006) The effects of operational and environmental variations on anaerobic wastewater treatment systems: A review. Bioresour Technol 97:1105-1118.
    • (2006) Bioresour Technol , vol.97 , pp. 1105-1118
    • Leitão, R.C.1    Van Haandel, A.C.2    Zeeman, G.3    Lettinga, G.4
  • 4
    • 0038482137 scopus 로고    scopus 로고
    • Diversity and dynamics of microbial communities in engineered environments and their implications for process stability
    • DOI 10.1016/S0958-1669(03)00065-X
    • Briones A, Raskin L (2003) Diversity and dynamics of microbial communities in engineered environments and their implications for process stability. Curr Opin Biotechnol 14:270-276. (Pubitemid 36782655)
    • (2003) Current Opinion in Biotechnology , vol.14 , Issue.3 , pp. 270-276
    • Briones, A.1    Raskin, L.2
  • 5
    • 67549099704 scopus 로고    scopus 로고
    • Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge
    • Rivière D, et al. (2009) Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME J 3:700-714.
    • (2009) ISME J , vol.3 , pp. 700-714
    • Rivière, D.1
  • 7
    • 0036131832 scopus 로고    scopus 로고
    • Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE
    • DOI 10.1016/S0043-1354(01)00277-9, PII S0043135401002779
    • LaPara TM, Nakatsu CH, Pantea LM, Alleman JE (2002) Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE. Water Res 36:638-646. (Pubitemid 33103754)
    • (2002) Water Research , vol.36 , Issue.3 , pp. 638-646
    • LaPara, T.M.1    Nakatsu, C.H.2    Pantea, L.M.3    Alleman, J.E.4
  • 8
    • 48749108522 scopus 로고    scopus 로고
    • Ability of DNA content and DGGE analysis to reflect the performance condition of an anaerobic biowaste fermenter
    • Malin C, Illmer P (2008) Ability of DNA content and DGGE analysis to reflect the performance condition of an anaerobic biowaste fermenter. Microbiol Res 163:503-511.
    • (2008) Microbiol Res , vol.163 , pp. 503-511
    • Malin, C.1    Illmer, P.2
  • 9
    • 64749090232 scopus 로고    scopus 로고
    • Effect of biowaste sludge maturation on the diversity of thermophilic bacteria and archaea in an anaerobic reactor
    • Goberna M, Insam H, Franke-Whittle IH (2009) Effect of biowaste sludge maturation on the diversity of thermophilic bacteria and archaea in an anaerobic reactor. Appl Environ Microbiol 75:2566-2572.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2566-2572
    • Goberna, M.1    Insam, H.2    Franke-Whittle, I.H.3
  • 10
    • 0035095377 scopus 로고    scopus 로고
    • Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions-II: Microbial population dynamics
    • DOI 10.1016/S0043-1354(00)00438-3, PII S0043135400004383
    • McMahon KD, Stroot PG, Mackie RI, Raskin L (2001) Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions - II: Microbial population dynamics. Water Res 35:1817-1827. (Pubitemid 32201491)
    • (2001) Water Research , vol.35 , Issue.7 , pp. 1817-1827
    • McMahon, K.D.1    Stroot, P.G.2    Mackie, R.I.3    Raskin, L.4
  • 11
    • 33144462974 scopus 로고    scopus 로고
    • Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester
    • DOI 10.1128/AEM.72.2.1623-1630.2006
    • Hori T, Haruta S, Ueno Y, Ishii M, Igarashi Y (2006) Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester. Appl Environ Microbiol 72:1623-1630. (Pubitemid 43271278)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.2 , pp. 1623-1630
    • Hori, T.1    Haruta, S.2    Ueno, Y.3    Ishii, M.4    Igarashi, Y.5
  • 13
    • 0034547651 scopus 로고    scopus 로고
    • Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis
    • DOI 10.1046/j.1462-2920.2000.00072.x
    • Zumstein E, Moletta R, Godon JJ (2000) Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis. Environ Microbiol 2:69-78. (Pubitemid 33124583)
    • (2000) Environmental Microbiology , vol.2 , Issue.1 , pp. 69-78
    • Zumstein, E.1    Moletta, R.2    Godon, J.-J.3
  • 14
    • 0033827650 scopus 로고    scopus 로고
    • Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose
    • Hashsham SA, et al. (2000) Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose. Appl Environ Microbiol 66:4050-4057.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4050-4057
    • Hashsham, S.A.1
  • 15
    • 63849310200 scopus 로고    scopus 로고
    • Initial community evenness favours functionality under selective stress
    • Wittebolle L, et al. (2009) Initial community evenness favours functionality under selective stress. Nature 458:623-626.
    • (2009) Nature , vol.458 , pp. 623-626
    • Wittebolle, L.1
  • 16
    • 50049126125 scopus 로고    scopus 로고
    • Colloquium paper: Resistance, resilience, and redundancy in microbial communities
    • Allison SD, Martiny JBH (2008) Colloquium paper: Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci USA 105(Suppl 1):11512-11519.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.SUPPL. 1 , pp. 11512-11519
    • Allison, S.D.1    Martiny, J.B.H.2
  • 17
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • DOI 10.1128/AEM.71.12.8228-8235.2005
    • Lozupone C, Knight R (2005) UniFrac: A new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71:8228-8235. (Pubitemid 41803949)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.12 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 18
    • 0027341088 scopus 로고
    • Dissimilatory Fe(III) reduction by the marine microorganism Desulfuromonas acetoxidans
    • Roden EE, Lovley DR (1993) Dissimilatory Fe(III) reduction by the marine microorganism Desulfuromonas acetoxidans. Appl Environ Microbiol 59:734-742. (Pubitemid 23072350)
    • (1993) Applied and Environmental Microbiology , vol.59 , Issue.3 , pp. 734-742
    • Roden, E.E.1    Lovley, D.R.2
  • 20
    • 85047693792 scopus 로고    scopus 로고
    • An eco-informatics tool for microbial community studies: Supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA
    • Yang CY, et al. (2006) An eco-informatics tool for microbial community studies: Supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. J Microbiol Methods 65:49-62.
    • (2006) J Microbiol Methods , vol.65 , pp. 49-62
    • Yang, C.Y.1
  • 21
    • 0013258174 scopus 로고    scopus 로고
    • Molecular characterization of sulfate-reducing bacteria in the Guaymas basin
    • DOI 10.1128/AEM.69.5.2765-2772.2003
    • Dhillon A, Teske A, Dillon J, Stahl DA, Sogin ML (2003) Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol 69:2765-2772. (Pubitemid 36560355)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.5 , pp. 2765-2772
    • Dhillon, A.1    Teske, A.2    Dillon, J.3    Stahl, D.A.4    Sogin, M.L.5
  • 23
    • 77956647726 scopus 로고    scopus 로고
    • Systems approaches to microbial communities and their functioning
    • Röling WFM, Ferrer M, Golyshin PN (2010) Systems approaches to microbial communities and their functioning. Curr Opin Biotechnol 21:532-538.
    • (2010) Curr Opin Biotechnol , vol.21 , pp. 532-538
    • Röling, W.F.M.1    Ferrer, M.2    Golyshin, P.N.3
  • 24
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • DOI 10.1038/nmeth.1184, PII NMETH.1184
    • Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5:235-237. (Pubitemid 351325646)
    • (2008) Nature Methods , vol.5 , Issue.3 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 26
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335-336.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 28
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: A flexible tool for aligning sequences to a template alignment
    • Caporaso JG, et al. (2010) PyNAST: A flexible tool for aligning sequences to a template alignment. Bioinformatics 26:266-267.
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1
  • 29
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, et al. (2009) Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 30
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-approximately maximum-likelihood trees for large alignments
    • Price MN, Dehal PS, Arkin AP (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS ONE 5:e9490.
    • (2010) PLoS ONE , vol.5
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 31
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • DOI 10.1128/AEM.00062-07
    • Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261-5267. (Pubitemid 47326658)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 32
    • 0032967877 scopus 로고    scopus 로고
    • Distance-based redundancy analysis: Testing multispecies responses in multifactorial ecological experiments
    • Legendre P, Anderson MJ (1999) Distance-based redundancy analysis: Testing multispecies responses in multifactorial ecological experiments. Ecol Monogr 69:1-24. (Pubitemid 29073054)
    • (1999) Ecological Monographs , vol.69 , Issue.1 , pp. 1-24
    • Legendre, P.1    Andersson, M.J.2
  • 33
    • 0042815050 scopus 로고    scopus 로고
    • Canonical analysis of principal coordinates: A useful method of constrained ordination for ecology
    • Anderson MJ, Willis TJ (2003) Canonical analysis of principal coordinates: A useful method of constrained ordination for ecology. Ecology 84:511-525. (Pubitemid 36893087)
    • (2003) Ecology , vol.84 , Issue.2 , pp. 511-525
    • Anderson, M.J.1    Willis, T.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.