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Volumn 77, Issue 7, 2014, Pages 502-509

Super-resolution imaging with stochastic single-molecule localization: Concepts, technical developments, and biological applications

Author keywords

Fluorescence microscopy; PALM; STORM; Super resolution

Indexed keywords

DIFFRACTION; OPTICAL RESOLVING POWER; STOCHASTIC SYSTEMS;

EID: 84903129343     PISSN: 1059910X     EISSN: 10970029     Source Type: Journal    
DOI: 10.1002/jemt.22346     Document Type: Article
Times cited : (31)

References (65)
  • 1
    • 84884212705 scopus 로고    scopus 로고
    • Identification of the factors affecting co-localization precision for quantitative multicolor localization microscopy
    • Annibale P, Scarselli M, Greco M, Radenovic A. 2012. Identification of the factors affecting co-localization precision for quantitative multicolor localization microscopy. Opt Nanoscopy 1:9.
    • (2012) Opt Nanoscopy , vol.1 , pp. 9
    • Annibale, P.1    Scarselli, M.2    Greco, M.3    Radenovic, A.4
  • 2
    • 84865556074 scopus 로고    scopus 로고
    • A high-density 3D localization algorithm for stochastic optical reconstruction microscopy
    • Babcock H, Yaron MS, Zhuang X. 2012. A high-density 3D localization algorithm for stochastic optical reconstruction microscopy. Opt Nanoscopy 1:6.
    • (2012) Opt Nanoscopy , vol.1 , pp. 6
    • Babcock, H.1    Yaron, M.S.2    Zhuang, X.3
  • 3
    • 84874484606 scopus 로고    scopus 로고
    • Correlative live-cell and superresolution microscopy reveals cargo transport dynamics at microtubule intersections
    • Balint S, Verdeny Vilanova I, Sandoval Alvarez A, Lakadamyali M. 2013. Correlative live-cell and superresolution microscopy reveals cargo transport dynamics at microtubule intersections. Proc Natl Acad Sci USA 110:3375-3380.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 3375-3380
    • Balint, S.1    Verdeny Vilanova, I.2    Sandoval Alvarez, A.3    Lakadamyali, M.4
  • 4
    • 84883459241 scopus 로고    scopus 로고
    • Fourier ring correlation as a resolution criterion for super-resolution microscopy
    • Banterle N, Bui KH, Lemke EA, Beck M. 2013. Fourier ring correlation as a resolution criterion for super-resolution microscopy. J Struct Biol 183:363-367.
    • (2013) J Struct Biol , vol.183 , pp. 363-367
    • Banterle, N.1    Bui, K.H.2    Lemke, E.A.3    Beck, M.4
  • 5
    • 18044373456 scopus 로고    scopus 로고
    • Short-range spectroscopic ruler based on a single-molecule optical switch
    • Bates M, Blosser TR, Zhuang X. 2005. Short-range spectroscopic ruler based on a single-molecule optical switch. Phys Rev Lett 94:108101.
    • (2005) Phys Rev Lett , vol.94 , pp. 108101
    • Bates, M.1    Blosser, T.R.2    Zhuang, X.3
  • 6
    • 34648826792 scopus 로고    scopus 로고
    • Multicolor super-resolution imaging with photo-switchable fluorescent probes
    • Bates M, Huang B, Dempsey GT, Zhuang X. 2007. Multicolor super-resolution imaging with photo-switchable fluorescent probes. Science 317:1749-1753.
    • (2007) Science , vol.317 , pp. 1749-1753
    • Bates, M.1    Huang, B.2    Dempsey, G.T.3    Zhuang, X.4
  • 7
    • 84862908708 scopus 로고    scopus 로고
    • Multicolor super-resolution fluorescence imaging via multi-parameter fluorophore detection
    • Bates M, Dempsey GT, Chen KH, Zhuang X. 2012. Multicolor super-resolution fluorescence imaging via multi-parameter fluorophore detection. ChemPhysChem 13:99-107.
    • (2012) ChemPhysChem , vol.13 , pp. 99-107
    • Bates, M.1    Dempsey, G.T.2    Chen, K.H.3    Zhuang, X.4
  • 8
    • 84855870640 scopus 로고    scopus 로고
    • Live-cell dSTORM of cellular DNA based on direct DNA labeling
    • Benke A, Manley S. 2012. Live-cell dSTORM of cellular DNA based on direct DNA labeling. ChemBioChem 13:298-301.
    • (2012) ChemBioChem , vol.13 , pp. 298-301
    • Benke, A.1    Manley, S.2
  • 13
    • 78649927344 scopus 로고    scopus 로고
    • Superresolution imaging of chemical synapses in the brain
    • Dani A, Huang B, Bergan J, Dulac C, Zhuang X. 2010. Superresolution imaging of chemical synapses in the brain. Neuron 68:843-856.
    • (2010) Neuron , vol.68 , pp. 843-856
    • Dani, A.1    Huang, B.2    Bergan, J.3    Dulac, C.4    Zhuang, X.5
  • 14
    • 82355191588 scopus 로고    scopus 로고
    • Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging
    • Dempsey GT, Vaughan JC, Chen KH, Bates M, Zhuang X. 2011. Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging. Nat Methods 8:1027-1036.
    • (2011) Nat Methods , vol.8 , pp. 1027-1036
    • Dempsey, G.T.1    Vaughan, J.C.2    Chen, K.H.3    Bates, M.4    Zhuang, X.5
  • 15
    • 84895068066 scopus 로고    scopus 로고
    • Single-molecule evaluation of fluorescent protein photoactivation efficiency using an in vivo nanotemplate
    • Durisic N, Laparra-Cuervo L, Sandoval-Alvarez A, Borbely JS, Lakadamyali M. 2014. Single-molecule evaluation of fluorescent protein photoactivation efficiency using an in vivo nanotemplate. Nat Methods 11:156-162.
    • (2014) Nat Methods , vol.11 , pp. 156-162
    • Durisic, N.1    Laparra-Cuervo, L.2    Sandoval-Alvarez, A.3    Borbely, J.S.4    Lakadamyali, M.5
  • 17
    • 56749104130 scopus 로고    scopus 로고
    • Fluorescent probes for super-resolution imaging in living cells
    • Fernandez-Suarez M, Ting AY. 2008. Fluorescent probes for super-resolution imaging in living cells. Nat Rev Mol Cell Biol 9:929-943.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 929-943
    • Fernandez-Suarez, M.1    Ting, A.Y.2
  • 18
    • 77951960808 scopus 로고    scopus 로고
    • Photoswitching of monomeric and dimeric DNA-intercalating cyanine dyes for super-resolution microscopy applications
    • Flors C. 2010. Photoswitching of monomeric and dimeric DNA-intercalating cyanine dyes for super-resolution microscopy applications. Photochem Photobiol Sci 9:643-648.
    • (2010) Photochem Photobiol Sci , vol.9 , pp. 643-648
    • Flors, C.1
  • 19
    • 24944539530 scopus 로고    scopus 로고
    • Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution
    • Gustafsson MG. 2005. Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution. Proc Natl Acad Sci USA 102:13081-13086.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 13081-13086
    • Gustafsson, M.G.1
  • 20
    • 15744396330 scopus 로고    scopus 로고
    • Carbocyanine dyes as efficient reversible single-molecule optical switch
    • Heilemann M, Margeat E, Kasper R, Sauer M, Tinnefeld P. 2005. Carbocyanine dyes as efficient reversible single-molecule optical switch. J Am Chem Soc 127:3801-3806.
    • (2005) J Am Chem Soc , vol.127 , pp. 3801-3806
    • Heilemann, M.1    Margeat, E.2    Kasper, R.3    Sauer, M.4    Tinnefeld, P.5
  • 23
    • 34249945258 scopus 로고    scopus 로고
    • Far-field optical nanoscopy
    • Hell SW. 2007. Far-field optical nanoscopy. Science 316:1153-1158.
    • (2007) Science , vol.316 , pp. 1153-1158
    • Hell, S.W.1
  • 24
    • 33845360042 scopus 로고    scopus 로고
    • Ultra-high resolution imaging by fluorescence photoactivation localization microscopy
    • Hess ST, Girirajan TP, Mason MD. 2006. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys J 91:4258-4272.
    • (2006) Biophys J , vol.91 , pp. 4258-4272
    • Hess, S.T.1    Girirajan, T.P.2    Mason, M.D.3
  • 25
    • 79953283371 scopus 로고    scopus 로고
    • DAOSTORM: An algorithm for high- density super-resolution microscopy
    • Holden SJ, Uphoff S, Kapanidis AN. 2011. DAOSTORM: An algorithm for high- density super-resolution microscopy. Nat Methods 8:279-280.
    • (2011) Nat Methods , vol.8 , pp. 279-280
    • Holden, S.J.1    Uphoff, S.2    Kapanidis, A.N.3
  • 26
    • 38949216802 scopus 로고    scopus 로고
    • Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy
    • Huang B, Wang W, Bates M, Zhuang X. 2008. Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy. Science 319:810-813.
    • (2008) Science , vol.319 , pp. 810-813
    • Huang, B.1    Wang, W.2    Bates, M.3    Zhuang, X.4
  • 27
    • 67650762824 scopus 로고    scopus 로고
    • Super-resolution fluorescence microscopy
    • Huang B, Bates M, Zhuang X. 2009. Super-resolution fluorescence microscopy. Annu Rev Biochem 78:993-1016.
    • (2009) Annu Rev Biochem , vol.78 , pp. 993-1016
    • Huang, B.1    Bates, M.2    Zhuang, X.3
  • 28
    • 78650512639 scopus 로고    scopus 로고
    • Breaking the diffraction barrier: Super-resolution imaging of cells
    • Huang B, Babcock H, Zhuang X. 2010. Breaking the diffraction barrier: Super-resolution imaging of cells. Cell 143:1047-1058.
    • (2010) Cell , vol.143 , pp. 1047-1058
    • Huang, B.1    Babcock, H.2    Zhuang, X.3
  • 30
    • 4043090758 scopus 로고    scopus 로고
    • Optical sectioning deep inside live embryos by selective plane illumination microscopy
    • Huisken J, Swoger J, Del Bene F, Wittbrodt J, Stelzer EH. 2004. Optical sectioning deep inside live embryos by selective plane illumination microscopy. Science 305:1007-1009.
    • (2004) Science , vol.305 , pp. 1007-1009
    • Huisken, J.1    Swoger, J.2    Del Bene, F.3    Wittbrodt, J.4    Stelzer, E.H.5
  • 31
    • 79957823841 scopus 로고    scopus 로고
    • Fast, three-dimensional super-resolution imaging of live cells
    • Jones SA, Shim SH, He J, Zhuang X. 2011. Fast, three-dimensional super-resolution imaging of live cells. Nat Methods 8:499-508.
    • (2011) Nat Methods , vol.8 , pp. 499-508
    • Jones, S.A.1    Shim, S.H.2    He, J.3    Zhuang, X.4
  • 32
    • 0032607671 scopus 로고    scopus 로고
    • Subdiffraction resolution in far-field fluorescence microscopy
    • Klar TA, Hell SW. 1999. Subdiffraction resolution in far-field fluorescence microscopy. Opt Lett 24:954-956.
    • (1999) Opt Lett , vol.24 , pp. 954-956
    • Klar, T.A.1    Hell, S.W.2
  • 33
    • 0034682512 scopus 로고    scopus 로고
    • Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission
    • Klar TA, Jakobs S, Dyba M, Egner A, Hell SW. 2000. Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission. Proc Natl Acad Sci USA 97:8206-8210.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 8206-8210
    • Klar, T.A.1    Jakobs, S.2    Dyba, M.3    Egner, A.4    Hell, S.W.5
  • 35
    • 84856194192 scopus 로고    scopus 로고
    • 3D multicolor super-resolution imaging offers improved accuracy in neuron tracing
    • Lakadamyali M, Babcock H, Bates M, Zhuang X, Lichtman J. 2012. 3D multicolor super-resolution imaging offers improved accuracy in neuron tracing. PLoS One 7:e30826.
    • (2012) PLoS One , vol.7
    • Lakadamyali, M.1    Babcock, H.2    Bates, M.3    Zhuang, X.4    Lichtman, J.5
  • 36
    • 84896398732 scopus 로고    scopus 로고
    • Super-resolution microscopy: Going live and going fast
    • doi: 10.1002/cphc.201300720.
    • Lakadamyali M. 2013. Super-resolution microscopy: Going live and going fast. ChemPhysChem, doi: 10.1002/cphc.201300720.
    • (2013) ChemPhysChem
    • Lakadamyali, M.1
  • 38
    • 70350302609 scopus 로고    scopus 로고
    • Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging
    • Lippincott-Schwartz J, Patterson GH. 2009. Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging. Trends Cell Biol 19:555-565.
    • (2009) Trends Cell Biol , vol.19 , pp. 555-565
    • Lippincott-Schwartz, J.1    Patterson, G.H.2
  • 39
    • 84858110907 scopus 로고    scopus 로고
    • Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution
    • Loschberger A, van de Linde S, Dabauvalle MC, Rieger B, Heilemann M, Krohne G, Sauer M. 2012. Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution. J Cell Sci 125 (Part 3):570-575.
    • (2012) J Cell Sci , vol.125 , Issue.PART 3 , pp. 570-575
    • Loschberger, A.1    van de Linde, S.2    Dabauvalle, M.C.3    Rieger, B.4    Heilemann, M.5    Krohne, G.6    Sauer, M.7
  • 40
    • 77952215650 scopus 로고    scopus 로고
    • Optimized localization analysis for single-molecule tracking and super-resolution microscopy
    • Mortensen KI, Churchman LS, Spudich JA, Flyvbjerg H. 2010. Optimized localization analysis for single-molecule tracking and super-resolution microscopy. Nat Methods 7:377-381.
    • (2010) Nat Methods , vol.7 , pp. 377-381
    • Mortensen, K.I.1    Churchman, L.S.2    Spudich, J.A.3    Flyvbjerg, H.4
  • 41
    • 84878279566 scopus 로고    scopus 로고
    • Super-resolution microscopy reveals specific recruitment of HIV-1 envelope proteins to viral assembly sites dependent on the envelope C-terminal tail
    • Muranyi W, Malkusch S, Muller B, Heilemann M, Krausslich HG. 2013. Super-resolution microscopy reveals specific recruitment of HIV-1 envelope proteins to viral assembly sites dependent on the envelope C-terminal tail. PLoS Pathog 9:e1003198.
    • (2013) PLoS Pathog , vol.9
    • Muranyi, W.1    Malkusch, S.2    Muller, B.3    Heilemann, M.4    Krausslich, H.G.5
  • 43
    • 84880418689 scopus 로고    scopus 로고
    • Resolution doubling in 3D-STORM imaging through improved buffers
    • Olivier N, Keller D, Gonczy P, Manley S. 2013. Resolution doubling in 3D-STORM imaging through improved buffers. PLoS One 8:e69004.
    • (2013) PLoS One , vol.8
    • Olivier, N.1    Keller, D.2    Gonczy, P.3    Manley, S.4
  • 44
    • 0037072602 scopus 로고    scopus 로고
    • A photoactivatable GFP for selective photolabeling of proteins and cells
    • Patterson GH, Lippincott-Schwartz J. 2002. A photoactivatable GFP for selective photolabeling of proteins and cells. Science 297:1873-1877.
    • (2002) Science , vol.297 , pp. 1873-1877
    • Patterson, G.H.1    Lippincott-Schwartz, J.2
  • 45
  • 46
    • 84861979783 scopus 로고    scopus 로고
    • A simple, versatile method for GFP-based super-resolution microscopy via nanobodies
    • Ries J, Kaplan C, Platonova E, Eghlidi H, Ewers H. 2012. A simple, versatile method for GFP-based super-resolution microscopy via nanobodies. Nat Methods 9:582-584.
    • (2012) Nat Methods , vol.9 , pp. 582-584
    • Ries, J.1    Kaplan, C.2    Platonova, E.3    Eghlidi, H.4    Ewers, H.5
  • 47
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • Rust MJ, Bates M, Zhuang X. 2006. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 3:793-795.
    • (2006) Nat Methods , vol.3 , pp. 793-795
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 50
    • 42949083695 scopus 로고    scopus 로고
    • Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics
    • Shroff H, Galbraith CG, Galbraith JA, Betzig E. 2008. Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics. Nat Methods 5:417-423.
    • (2008) Nat Methods , vol.5 , pp. 417-423
    • Shroff, H.1    Galbraith, C.G.2    Galbraith, J.A.3    Betzig, E.4
  • 53
    • 84864829889 scopus 로고    scopus 로고
    • The effect of background on localization uncertainty in single emitter imaging
    • Stallinga S, Rieger B. 2012. The effect of background on localization uncertainty in single emitter imaging. IEEE Int Symp Biomed Imaging 988-991.
    • (2012) IEEE Int Symp Biomed Imaging , pp. 988-991
    • Stallinga, S.1    Rieger, B.2
  • 54
    • 84881241505 scopus 로고    scopus 로고
    • Nuclear pore scaffold structure analyzed by super-resolution microscopy and particle averaging
    • Szymborska A, de Marco A, Daigle N, Cordes VC, Briggs JA, Ellenberg J. 2013. Nuclear pore scaffold structure analyzed by super-resolution microscopy and particle averaging. Science 341:655-658.
    • (2013) Science , vol.341 , pp. 655-658
    • Szymborska, A.1    de Marco, A.2    Daigle, N.3    Cordes, V.C.4    Briggs, J.A.5    Ellenberg, J.6
  • 55
    • 0036231415 scopus 로고    scopus 로고
    • Precise nanometer localization analysis for individual fluorescent probes
    • Thompson RE, Larson DR, Webb WW. 2002. Precise nanometer localization analysis for individual fluorescent probes. Biophys J 82:2775-2783.
    • (2002) Biophys J , vol.82 , pp. 2775-2783
    • Thompson, R.E.1    Larson, D.R.2    Webb, W.W.3
  • 57
    • 84859920287 scopus 로고    scopus 로고
    • Live-cell super-resolution imaging with synthetic fluorophores
    • van de Linde S, Heilemann M, Sauer M. 2012. Live-cell super-resolution imaging with synthetic fluorophores. Annu Rev Phys Chem 63:519-540.
    • (2012) Annu Rev Phys Chem , vol.63 , pp. 519-540
    • van de Linde, S.1    Heilemann, M.2    Sauer, M.3
  • 59
    • 84873838453 scopus 로고    scopus 로고
    • Phosphine quenching of cyanine dyes as a versatile tool for fluorescence microscopy
    • Vaughan JC, Dempsey GT, Sun E, Zhuang X. 2013. Phosphine quenching of cyanine dyes as a versatile tool for fluorescence microscopy. J Am Chem Soc 135:1197-1200.
    • (2013) J Am Chem Soc , vol.135 , pp. 1197-1200
    • Vaughan, J.C.1    Dempsey, G.T.2    Sun, E.3    Zhuang, X.4
  • 61
    • 84856479181 scopus 로고    scopus 로고
    • Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton
    • Xu K, Babcock HP, Zhuang X. 2012. Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton. Nat Methods 9:185-188.
    • (2012) Nat Methods , vol.9 , pp. 185-188
    • Xu, K.1    Babcock, H.P.2    Zhuang, X.3
  • 62
    • 84872796017 scopus 로고    scopus 로고
    • Actin, spectrin, and associated proteins form a periodic cytoskeletal structure in axons
    • Xu K, Zhong G, Zhuang X. 2013. Actin, spectrin, and associated proteins form a periodic cytoskeletal structure in axons. Science 339:452-456.
    • (2013) Science , vol.339 , pp. 452-456
    • Xu, K.1    Zhong, G.2    Zhuang, X.3
  • 63
    • 4444364789 scopus 로고    scopus 로고
    • Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin
    • Yildiz A, Park H, Safer D, Yang Z, Chen LQ, Selvin PR, Sweeney HL. 2004. Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin. J Biol Chem 279:37223-37226.
    • (2004) J Biol Chem , vol.279 , pp. 37223-37226
    • Yildiz, A.1    Park, H.2    Safer, D.3    Yang, Z.4    Chen, L.Q.5    Selvin, P.R.6    Sweeney, H.L.7
  • 64
    • 84857032212 scopus 로고    scopus 로고
    • Super-resolution fluorescence imaging of chromosomal DNA
    • Zessin PJ, Finan K, Heilemann M. 2012. Super-resolution fluorescence imaging of chromosomal DNA. J Struct Biol 177:344-348.
    • (2012) J Struct Biol , vol.177 , pp. 344-348
    • Zessin, P.J.1    Finan, K.2    Heilemann, M.3


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