Fourier ring correlation as a resolution criterion for super-resolution microscopy

Journal of Structural Biology

Volumn 183, Issue 3, 2013, Pages 363-367

  Banterle, Niccolò ^a   Bui, Khanh Huy ^a   Lemke, Edward A ^a   Beck, Martin ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Fourier ring correlation; Resolution; Super resolution microscopy

Indexed keywords

ARTICLE; CALCULATION; COMPUTER PROGRAM; COMPUTER SIMULATION; ELECTRON MICROSCOPY; FLUORESCENT LIGHTING; FOURIER ANALYSIS; HUMAN; HUMAN CELL; IMAGE RECONSTRUCTION; MICROSCOPY; NUCLEAR PORE COMPLEX; PRIORITY JOURNAL; SUPER RESOLUTION MICROSCOPY;

FOURIER RING CORRELATION; RESOLUTION; SUPER-RESOLUTION MICROSCOPY;

ALGORITHMS; CELL LINE; COMPUTER SIMULATION; FOURIER ANALYSIS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; NUCLEAR PORE; SOFTWARE;

EID: 84883459241     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2013.05.004     Document Type: Article

References (18)

1. Annibale P., Vanni S., Scarselli M., Rothlisberger U., Radenovic A. Quantitative photo activated localization microscopy: unraveling the effects of photoblinking. Plos One 2011, 6:e22678.
2. Beckmann R., Bubeck D., Grassucci R., Penczek P., Verschoor A., Blobel G., Frank J. Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex. Science 1997, 278:2123-2126.
3. Betzig E., Patterson G.H., Sougrat R., Lindwasser O.W., Olenych S., Bonifacino J.S., Davidson M.W., Lippincott-Schwartz J., Hess H.F. Imaging intracellular fluorescent proteins at nanometer resolution. Science 2006, 313:1642-1645.
4. Fitzgerald J.E., Lu J., Schnitzer M.J. Estimation theoretic measure of resolution for stochastic localization microscopy. Phys. Rev. Lett. 2012, 109:048102.
5. Folling J., Bossi M., Bock H., Medda R., Wurm C.A., Hein B., Jakobs S., Eggeling C., Hell S.W. Fluorescence nanoscopy by ground-state depletion and single-molecule return. Nat. Methods 2008, 5:943-945.
6. Harauz G., van Heel M. Exact filters for general geometry three dimensional reconstruction. Optik 1986, 73:146-156.
7. Heilemann M., van de Linde S., Schuttpelz M., Kasper R., Seefeldt B., Mukherjee A., Tinnefeld P., Sauer M. Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes. Angew. Chem. Int. Ed. Engl. 2008, 47:6172-6176.
8. Hess S.T., Girirajan T.P., Mason M.D. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys. J. 2006, 91:4258-4272.
9. Lee S.H., Shin J.Y., Lee A., Bustamante C. Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM). Proc. Natl. Acad. Sci. USA 2012, 109:17436-17441.
10. Liao H.Y., Frank J. Definition and estimation of resolution in single-particle reconstructions. Structure 2010, 18:768-775.
11. Mukamel E.A., Schnitzer M.J. Unified resolution bounds for conventional and stochastic localization fluorescence microscopy. Phys. Rev. Lett. 2012, 109:168102.
12. Nieuwenhuizen R.P., Lidke K.A., Bates M., Puig D.L., Grunwald D., Stallinga S., Rieger B. Measuring image resolution in optical nanoscopy. Nat. Methods 2013, 10:557-562.
13. Ori A., Banterle N., Iskar M., Andrés-Pons A., Escher C., Bui H.K., Sparks L., Solis-Mezarino V., Rinner O., Bork P., Lemke E.A., Beck M. Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines. Mol. Syst. Biol. 2013, 9:648.
14. Rust M.J., Bates M., Zhuang X. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 2006, 3:793-795.
15. Saxton W.O., Baumeister W. The correlation averaging of a regularly arranged bacterial cell envelope protein. J. Microsc. 1982, 127:127-138.
16. Schmied J.J., Gietl A., Holzmeister P., Forthmann C., Steinhauer C., Dammeyer T., Tinnefeld P. Fluorescence and super-resolution standards based on DNA origami. Nat. Methods 2012, 9:1133-1134.
17. Sengupta P., Jovanovic-Talisman T., Skoko D., Renz M., Veatch S.L., Lippincott-Schwartz J. Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis. Nat. Methods 2011, 8:969-975.
18. Shroff H., Galbraith C.G., Galbraith J.A., Betzig E. Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics. Nat. Methods 2008, 5:417-423.