-
1
-
-
35148829910
-
Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza
-
Ammiraju JS, Zuccolo A, Yu Y, et al. 2007. Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza. Plant J. 52:342-351.
-
(2007)
Plant J
, vol.52
, pp. 342-351
-
-
Ammiraju, J.S.1
Zuccolo, A.2
Yu, Y.3
-
2
-
-
0018908438
-
A molecular description of telomeric heterochromatin in Secale species
-
Bedbrook JR, Jones J, O'Dell M, Thompson RD, Flavell RB. 1980. A molecular description of telomeric heterochromatin in Secale species. Cell 19:545-560.
-
(1980)
Cell
, vol.19
, pp. 545-560
-
-
Bedbrook, J.R.1
Jones, J.2
O'dell, M.3
Thompson, R.D.4
Flavell, R.B.5
-
3
-
-
0033179883
-
Amount and organization of the heterochromatin in Olea europaea and related species
-
Bitonti MB, et al. 1999. Amount and organization of the heterochromatin in Olea europaea and related species. Heredity 83:188-195.
-
(1999)
Heredity
, vol.83
, pp. 188-195
-
-
Bitonti, M.B.1
-
4
-
-
78650525750
-
Transposable element insertions have strongly affected human evolution
-
Britten RJ. 2010. Transposable element insertions have strongly affected human evolution. Proc Natl Acad Sci U S A. 107:19945-19948.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 9945-19948
-
-
Britten, R.J.1
-
5
-
-
75849125164
-
Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome
-
Cavallini A, et al. 2010. Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome. Theor Appl Genet. 120: 491-508.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 491-508
-
-
Cavallini, A.1
-
6
-
-
0036924031
-
Diversity of Olea genotypes and the origin of cultivated olives
-
Contento A, et al. 2002. Diversity of Olea genotypes and the origin of cultivated olives. Theor Appl Genet. 104:1229-1238.
-
(2002)
Theor Appl Genet
, vol.104
, pp. 1229-1238
-
-
Contento, A.1
-
7
-
-
84860417116
-
A computational study of the dynamics of LTR retrotransposons in the Populus trichocarpa genome
-
Cossu RM, ButiM, Giordani T, Natali L, Cavallini A. 2012. A computational study of the dynamics of LTR retrotransposons in the Populus trichocarpa genome. Tree Genet Genomes. 8:61-75.
-
(2012)
Tree Genet Genomes
, vol.8
, pp. 61-75
-
-
Cossu, R.M.1
Butim Giordani, T.2
Natali, L.3
Cavallini, A.4
-
8
-
-
84893443187
-
An extensive evaluation of read trimming effects on Illumina NGS data analysis
-
Del Fabbro C, Scalabrin S, Morgante M, Giorgi FM. 2013. An extensive evaluation of read trimming effects on Illumina NGS data analysis. PLoS One 8:12.
-
(2013)
PLoS One
, vol.8
, pp. 12
-
-
Del Fabbro, C.1
Scalabrin, S.2
Morgante, M.3
Giorgi, F.M.4
-
9
-
-
0036061848
-
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
-
Devos KM, Brown JKM, Bennetzen JL. 2002. Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res. 12:1075-1079.
-
(2002)
Genome Res
, vol.12
, pp. 1075-1079
-
-
Devos, K.M.1
Jkm, B.2
Bennetzen, J.L.3
-
10
-
-
0345492218
-
Molecular drive in multigene families: How biological novelties arise, spread and are assimilated
-
Dover GA. 1986. Molecular drive in multigene families: how biological novelties arise, spread and are assimilated. Trends Genet. 2:159-165.
-
(1986)
Trends Genet
, vol.2
, pp. 159-165
-
-
Dover, G.A.1
-
11
-
-
84865067382
-
Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences
-
Gemayel R, Cho J, Boeynaems S, Verstrepen KJ. 2012. Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences. Genes 3:461-480.
-
(2012)
Genes
, vol.3
, pp. 461-480
-
-
Gemayel, R.1
Cho, J.2
Boeynaems, S.3
Verstrepen, K.J.4
-
12
-
-
78149432728
-
Variable tandem repeats accelerate evolution of coding and regulatory sequences
-
Gemayel R, Vinces MD, Legendre M, Verstrepen KJ. 2010. Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet. 44:445-477.
-
(2010)
Annu Rev Genet
, vol.44
, pp. 445-477
-
-
Gemayel, R.1
Vinces, M.D.2
Legendre, M.3
Verstrepen, K.J.4
-
13
-
-
84876467721
-
Maize chromosomal knobs are located in gene-dense areas and suppress local recombination
-
Ghaffari R, Cannon EK, Kanizay LB, Lawrence CJ, Dawe RK. 2013. Maize chromosomal knobs are located in gene-dense areas and suppress local recombination. Chromosoma 122:67-75.
-
(2013)
Chromosoma
, vol.122
, pp. 67-75
-
-
Ghaffari, R.1
Cannon, E.K.2
Kanizay, L.B.3
Lawrence, C.J.4
Dawe, R.K.5
-
14
-
-
0036893213
-
Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae
-
Gragg H, Harfe BD, Jinks-Robertson S. 2002. Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae. Mol Cell Biol. 22:8756-8762.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 8756-8762
-
-
Gragg, H.1
Harfe, B.D.2
Jinks-Robertson, S.3
-
15
-
-
59249108807
-
Phylogenetic insights into the pace and pattern of plant genome size evolution
-
Volff JN, editor (Genome dynamics) . Basel (Switzerland): Karger
-
Grover C, Hawkins J, Wendel J. 2008. Phylogenetic insights into the pace and pattern of plant genome size evolution. In: Volff JN, editor. Plant genomes (Genome dynamics. Vol. 4). Basel (Switzerland): Karger, p. 57-68.
-
(2008)
Plant Genomes
, vol.4
, pp. 57-68
-
-
Grover, C.1
Hawkins, J.2
Wendel, J.3
-
16
-
-
39649119604
-
Phylogenetic determination of the pace of transposable element proliferation in plants: Copia and LINE-like elements in Gossypium
-
Hawkins JS, Hu G, Rapp RA, Grafenberg JL, Wendel JF. 2008. Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium. Genome 51: 11-18.
-
(2008)
Genome
, vol.51
, pp. 11-18
-
-
Hawkins, J.S.1
Hu, G.2
Rapp, R.A.3
Grafenberg, J.L.4
Wendel, J.F.5
-
17
-
-
84868568378
-
Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac
-
Hu Y, et al. 2012. Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac. Plant Cell Env. 35:2130-2142.
-
(2012)
Plant Cell Env
, vol.35
, pp. 2130-2142
-
-
Hu, Y.1
-
18
-
-
79952706183
-
The struggle for life of the genome's selfish architects
-
Hua-Van A, Le Rouzic A, Boutin TS, Filee J, Capy P. 2011. The struggle for life of the genome's selfish architects. Biol Direct. 6:19.
-
(2011)
Biol Direct
, vol.6
, pp. 19
-
-
Hua-Van, A.1
Le Rouzic, A.2
Boutin, T.S.3
Filee, J.4
Capy, P.5
-
19
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang X, Madan A. 1999. CAP3: a DNA sequence assembly program. Genome Res. 9:868-877.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
20
-
-
70649085835
-
The genome of the cucumber, Cucumis sativus L
-
Huang S, et al. 2009. The genome of the cucumber, Cucumis sativus L. Nat Genet. 41:1275-1281.
-
(2009)
Nat Genet
, vol.41
, pp. 1275-1281
-
-
Huang, S.1
-
21
-
-
84907150192
-
The map based sequence of the rice genome
-
International Rice Genome Sequencing Project
-
International Rice Genome Sequencing Project. 2005. The map based sequence of the rice genome. Nature 436:793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
22
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillon O, et al. 2007. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449: 463-467.
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
-
23
-
-
0034284437
-
Repbase update a database and an electronic journal of repetitive elements
-
Jurka J. 2000. Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16:418-420.
-
(2000)
Trends Genet
, vol.16
, pp. 418-420
-
-
Jurka, J.1
-
24
-
-
0034612315
-
Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
-
Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH. 2000. Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci U S A. 97:6603-6607.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6603-6607
-
-
Kalendar, R.1
Tanskanen, J.2
Immonen, S.3
Nevo, E.4
Schulman, A.H.5
-
25
-
-
0032144568
-
Genomic organization, sequence interrelationship, and physical localization using in situ hybridization of two tandemly repeated DNA sequences in the genus Olea
-
Katsiotis A, Hagidimitriou M, Douka A, Hatzopoulos P. 1998. Genomic organization, sequence interrelationship, and physical localization using in situ hybridization of two tandemly repeated DNA sequences in the genus Olea. Genome 41:527-534.
-
(1998)
Genome
, vol.41
, pp. 527-534
-
-
Katsiotis, A.1
Hagidimitriou, M.2
Douka, A.3
Hatzopoulos, P.4
-
26
-
-
0029591939
-
Differential homogenisation and amplification of two satellite DNAs in the genus Cucurbita (Cucurbitaceae)
-
King K, Jobst J, Hemleben V. 1995. Differential homogenisation and amplification of two satellite DNAs in the genus Cucurbita (Cucurbitaceae). J Mol Evol. 41:996-1005.
-
(1995)
J Mol Evol
, vol.41
, pp. 996-1005
-
-
King, K.1
Jobst, J.2
Hemleben, V.3
-
27
-
-
1242271304
-
Allele-specific gene expression uncovered
-
Knight JC. 2004. Allele-specific gene expression uncovered. Trends Genet. 20:113-116.
-
(2004)
Trends Genet
, vol.20
, pp. 113-116
-
-
Knight, J.C.1
-
28
-
-
12744253474
-
A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
-
Kotera E, Tasaka M, Shikanai T. 2005. A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature 433:326-330.
-
(2005)
Nature
, vol.433
, pp. 326-330
-
-
Kotera, E.1
Tasaka, M.2
Shikanai, T.3
-
29
-
-
0032426015
-
Repetitive DNA elements as a major component of plant genomes
-
Kubis S, Schmidt T, Heslop-Harrison JS. 1998. Repetitive DNA elements as a major component of plant genomes. Ann Bot. 82:45-55.
-
(1998)
Ann Bot
, vol.82
, pp. 45-55
-
-
Kubis, S.1
Schmidt, T.2
Heslop-Harrison, J.S.3
-
30
-
-
38849170546
-
Sequence-based estimation of minisatellite and microsatellite repeat variability
-
Legendre M, Pochet N, Pak T, Verstrepen KJ. 2007. Sequence-based estimation of minisatellite and microsatellite repeat variability. Genome Res. 17:1787-1796.
-
(2007)
Genome Res
, vol.17
, pp. 1787-1796
-
-
Legendre, M.1
Pochet, N.2
Pak, T.3
Verstrepen, K.J.4
-
31
-
-
0034907357
-
A new repetitive DNA sequence family in the olive (Olea europaea L.)
-
Lorite P, Garcia MF, Carrillo JA, Palomeque T. 2001. A new repetitive DNA sequence family in the olive (Olea europaea L.). Hereditas 134: 73-78.
-
(2001)
Hereditas
, vol.134
, pp. 73-78
-
-
Lorite, P.1
Garcia, M.F.2
Carrillo, J.A.3
Palomeque, T.4
-
32
-
-
33846269337
-
Nuclear DNA content estimations in wild olive (Olea europaea L ssp europaea var sylvestris Brot.) and portuguese cultivars of O. Europaea using flow cytometry
-
Loureiro J, Rodriguez E, Costa A, Santos C. 2007. Nuclear DNA content estimations in wild olive (Olea europaea L. ssp. europaea var. sylvestris Brot.) and portuguese cultivars of O. europaea using flow cytometry. Genet Res Crop Evol. 54:21-25.
-
(2007)
Genet Res Crop Evol
, vol.54
, pp. 21-25
-
-
Loureiro, J.1
Rodriguez, E.2
Costa, A.3
Santos, C.4
-
33
-
-
4344616881
-
Rapid recent growth and divergence of rice nuclear genomes
-
Ma J, Bennetzen JL. 2004. Rapid recent growth and divergence of rice nuclear genomes. Proc Natl Acad Sci U S A. 101:12404-12410.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 12404-12410
-
-
Ma, J.1
Bennetzen, J.L.2
-
34
-
-
2342466982
-
Analyses of LTR retrotransposon structures reveal recent and rapid genomic DNA loss in rice
-
Ma J, Devos KM, Bennetzen JL. 2004. Analyses of LTR retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res. 14:860-869.
-
(2004)
Genome Res
, vol.14
, pp. 860-869
-
-
Ma, J.1
Devos, K.M.2
Bennetzen, J.L.3
-
35
-
-
80255127234
-
Cutadapt removes adapter sequences from highthroughput sequencing reads
-
[internet]. [cited 2014 Apr 1]. Available from
-
Martin M. 2011. Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnet.journal 17 [internet]. [cited 2014 Apr 1]. Available from: http://journal.embnet.org/index.php/embnetjournal/article/view/200/479.
-
(2011)
EMBnet. Journal
, vol.17
-
-
Martin, M.1
-
36
-
-
0034755894
-
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
-
Meyers BC, Tingey SV, Morgante M. 2001. Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res. 11:1660-1676.
-
(2001)
Genome Res
, vol.11
, pp. 1660-1676
-
-
Meyers, B.C.1
Tingey, S.V.2
Morgante, M.3
-
37
-
-
0033678776
-
The chromosome complement of Olea europaea L.: Characterization by differential staining of the chromatin and in-situ hybridization of highly repeated DNA sequences
-
Minelli S, Maggini F, Gelati MT, Angiolillo A, Cionini PG. 2000. The chromosome complement of Olea europaea L.: characterization by differential staining of the chromatin and in-situ hybridization of highly repeated DNA sequences. Chromosome Res. 8:615-619.
-
(2000)
Chromosome Res
, vol.8
, pp. 615-619
-
-
Minelli, S.1
Maggini, F.2
Gelati, M.T.3
Angiolillo, A.4
Cionini, P.G.5
-
38
-
-
42949157236
-
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
-
Ming R, et al. 2008. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452:991-997.
-
(2008)
Nature
, vol.452
, pp. 991-997
-
-
Ming, R.1
-
40
-
-
25144488228
-
Gene duplication and exon shuffling by helitronlike transposons generate intraspecies diversity in maize
-
Morgante M, et al. 2005. Gene duplication and exon shuffling by helitronlike transposons generate intraspecies diversity in maize. Nat Genet. 37:997-1002.
-
(2005)
Nat Genet
, vol.37
, pp. 997-1002
-
-
Morgante, M.1
-
41
-
-
84887212567
-
Evolution of genome size and complexity in Pinus
-
Morse AM, et al. 2009. Evolution of genome size and complexity in Pinus. PLoS One 4:e4332.
-
(2009)
PLoS One 4
-
-
Morse, A.M.1
-
42
-
-
84884959386
-
The repetitive component of the sunflower genome as revealed by different procedures for assembling next generation sequencing reads
-
Natali L, et al. 2013. The repetitive component of the sunflower genome as revealed by different procedures for assembling next generation sequencing reads. BMC Genomics 14:686.
-
(2013)
BMC Genomics
, vol.14
, pp. 686
-
-
Natali, L.1
-
43
-
-
33847228077
-
Isolation of Ty1-Copia putative LTR sequences and their use as a tool to analyse genetic diversity in Olea europaea
-
Natali L, Giordani T, Buti M, Cavallini A. 2007. Isolation of Ty1-Copia putative LTR sequences and their use as a tool to analyse genetic diversity in Olea europaea. Mol Breed. 19:255-265.
-
(2007)
Mol Breed
, vol.19
, pp. 255-265
-
-
Natali, L.1
Giordani, T.2
Buti, M.3
Cavallini, A.4
-
45
-
-
33745371107
-
Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement
-
Neumann P, Koblizkova A, Navratilova A, Macas J. 2006. Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement. Genetics 173: 1047-1056.
-
(2006)
Genetics
, vol.173
, pp. 1047-1056
-
-
Neumann, P.1
Koblizkova, A.2
Navratilova, A.3
Macas, J.4
-
46
-
-
77954854627
-
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
-
Novák P, Neumann P, Macas J. 2010. Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. BMC Bioinformatics 11:378.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 378
-
-
Novák, P.1
Neumann, P.2
Macas, J.3
-
47
-
-
84875165671
-
RepeatExplorer: A Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next generation sequence reads
-
Novák P, Neumann P, Pech J, Steinhaisl J,Macas J. 2013. RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next generation sequence reads. Bioinformatics 29:792-793.
-
(2013)
Bioinformatics
, vol.29
, pp. 792-793
-
-
Novák, P.1
Neumann, P.2
Pech, J.3
Steinhaisl Jmacas, J.4
-
48
-
-
2642614786
-
Expansions and contractions in a tandem repeat induced by double-strand break repair
-
Paques F, Leung WY, Haber JE. 1998. Expansions and contractions in a tandem repeat induced by double-strand break repair. Mol Cell Biol. 18:2045-2054.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 2045-2054
-
-
Paques, F.1
Leung, W.Y.2
Haber, J.E.3
-
49
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, et al. 2009. The Sorghum bicolor genome and the diversification of grasses. Nature 457:551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
-
50
-
-
79953254847
-
Journey through the past: 150 million years of plant genome evolution
-
Proost S, Pattyn P,Gerats T, Van de Peer Y. 2011. Journey through the past: 150 million years of plant genome evolution. Plant J. 66:58-65.
-
(2011)
Plant J
, vol.66
, pp. 58-65
-
-
Proost, S.1
Pattyn Pgerats, T.2
Van De Peer, Y.3
-
51
-
-
61849134400
-
High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: A new vertebrate model for aging research
-
Reichwald K, et al. 2009. High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research. Genome Biol. 10:R16.
-
(2009)
Genome Biol
, vol.10
-
-
Reichwald, K.1
-
52
-
-
0034252264
-
Mini- and microsatellite expansions: The recombination connection
-
Richard GF, Paques F. 2000. Mini- and microsatellite expansions: the recombination connection. EMBO Rep. 1:122-126.
-
(2000)
EMBO Rep
, vol.1
, pp. 122-126
-
-
Richard, G.F.1
Paques, F.2
-
53
-
-
0035404535
-
Evolving responsively: Adaptive mutation
-
Rosenberg SM. 2001. Evolving responsively: adaptive mutation. Nat Rev Genet. 2:504-515.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 504-515
-
-
Rosenberg, S.M.1
-
54
-
-
0031029451
-
Complex evolution of tandem-repetitive DNA in the Chironomus thummi species group
-
Ross R, Hankeln T, Schmidt ER. 1997. Complex evolution of tandem-repetitive DNA in the Chironomus thummi species group. JMol Evol. 44: 321-327.
-
(1997)
JMol Evol
, vol.44
, pp. 321-327
-
-
Ross, R.1
Hankeln, T.2
Schmidt, E.R.3
-
55
-
-
0034535678
-
Alu elements and the human genome
-
Rowold DJ, Herrara RJ. 2000. Alu elements and the human genome. Genetica 108:57-72.
-
(2000)
Genetica
, vol.108
, pp. 57-72
-
-
Rowold, D.J.1
Herrara, R.J.2
-
56
-
-
0032972599
-
DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
-
Rozas J, Rozas R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
57
-
-
0032413101
-
Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
-
SanMiguel P, Bennetzen JL. 1998. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann Bot. 82:37-44.
-
(1998)
Ann Bot
, vol.82
, pp. 37-44
-
-
Sanmiguel, P.1
Bennetzen, J.L.2
-
58
-
-
8144222430
-
Microsatellite mutation directed by an external stimulus
-
Schmidt AL, Mitter V. 2004. Microsatellite mutation directed by an external stimulus. Mutat Res. 568:233-243.
-
(2004)
Mutat Res
, vol.568
, pp. 233-243
-
-
Schmidt, A.L.1
Mitter, V.2
-
59
-
-
0032080757
-
Genomes, genes and junk: The largescale organization of plant chromosomes
-
Schmidt T, Heslop-Harrison JS. 1998. Genomes, genes and junk: the largescale organization of plant chromosomes. Trends Plant Sci. 3:195-199.
-
(1998)
Trends Plant Sci
, vol.3
, pp. 195-199
-
-
Schmidt, T.1
Heslop-Harrison, J.S.2
-
60
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, et al. 2009. The B73 maize genome: complexity, diversity, and dynamics. Science 326:1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
61
-
-
33947398002
-
Minimus: A fast, lightweight genome assembler
-
Sommer DD, Delcher AL, Salzberg SL, Pop M. 2007. Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8:64.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 64
-
-
Sommer, D.D.1
Delcher, A.L.2
Salzberg, S.L.3
Pop, M.4
-
62
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
-
Sonnhammer ELL, Durbin R. 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 167:1-10.
-
(1995)
Gene
, vol.167
, pp. 1-10
-
-
Sonnhammer, E.L.L.1
Durbin, R.2
-
63
-
-
84866730704
-
The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements
-
Staton SE, et al. 2012. The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements. Plant J. 72:142-153.
-
(2012)
Plant J
, vol.72
, pp. 142-153
-
-
Staton, S.E.1
-
64
-
-
0036945043
-
Genomic and chromosomal organization of Ty1-Copia-like sequences in Olea europaea and evolutionary relationships of Olea retroelements
-
Stergiou G, Katsiotis A, Hagidimitriou M, Loukas M. 2002. Genomic and chromosomal organization of Ty1-Copia-like sequences in Olea europaea and evolutionary relationships of Olea retroelements. Theor Appl Genet. 104:926-933.
-
(2002)
Theor Appl Genet
, vol.104
, pp. 926-933
-
-
Stergiou, G.1
Katsiotis, A.2
Hagidimitriou, M.3
Loukas, M.4
-
65
-
-
34250789278
-
Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
-
Swaminathan K, Varala K, Hudson ME. 2007. Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey. BMC Genomics 8:132.
-
(2007)
BMC Genomics
, vol.8
, pp. 132
-
-
Swaminathan, K.1
Varala, K.2
Hudson, M.E.3
-
66
-
-
77956994114
-
Use of cesium sulfate for equilibrium density gradient centrifugation
-
Szybalski W. 1968. Use of cesium sulfate for equilibrium density gradient centrifugation. Methods Enzymol. 12B:330-360.
-
(1968)
Methods Enzymol
, vol.12 B
, pp. 330-360
-
-
Szybalski, W.1
-
67
-
-
0026638651
-
Persistence of repeated sequences that evolve by replication slippage
-
Tachida H, Iizuka M. 1992. Persistence of repeated sequences that evolve by replication slippage. Genetics 131:471-478.
-
(1992)
Genetics
, vol.131
, pp. 471-478
-
-
Tachida, H.1
Iizuka, M.2
-
68
-
-
79960095966
-
Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians
-
Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J. 2011. Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biol Evol. 3: 219-229.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 219-229
-
-
Tenaillon, M.I.1
Hufford, M.B.2
Gaut, B.S.3
Ross-Ibarra, J.4
-
69
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
70
-
-
83855165105
-
Repetitive DNA and next-generation sequencing: Computational challenges and solutions
-
Treangen TJ, Salzberg SL. 2012. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet. 13: 36-46.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 36-46
-
-
Treangen, T.J.1
Salzberg, S.L.2
-
71
-
-
0037112912
-
Variation in satellite DNA profiles-causes and effects
-
Ugarkovic D, Plohl M. 2002. Variation in satellite DNA profiles-causes and effects. EMBO J. 21:5955-5959.
-
(2002)
EMBO J
, vol.21
, pp. 5955-5959
-
-
Ugarkovic, D.1
Plohl, M.2
-
72
-
-
0031905688
-
Comparative analysis of the nucleosomal structure of rye, wheat and their relatives
-
Vershinin AV, Heslop-Harrison JS. 1998. Comparative analysis of the nucleosomal structure of rye, wheat and their relatives. Plant Mol Biol. 36:149-161.
-
(1998)
Plant Mol Biol
, vol.36
, pp. 149-161
-
-
Vershinin, A.V.1
Heslop-Harrison, J.S.2
-
74
-
-
0342883231
-
A chromosome 5-specific repetitive DNA-sequence in rice (Oryza sativa L.)
-
Wang ZX, Kurata N, Saji S, Katayose Y, Minobe Y. 1995. A chromosome 5-specific repetitive DNA-sequence in rice (Oryza sativa L.). Theor Appl Genet. 90:907-913.
-
(1995)
Theor Appl Genet
, vol.90
, pp. 907-913
-
-
Wang, Z.X.1
Kurata, N.2
Saji, S.3
Katayose, Y.4
Minobe, Y.5
-
75
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T, et al. 2007. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 8:973-982.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 973-982
-
-
Wicker, T.1
-
76
-
-
0030068124
-
Destabilization of simple repetitive DNA sequences by transcription in yeast
-
Wierdl M, Greene CN, Datta A, Jinks-Robertson S, Petes TD. 1996. Destabilization of simple repetitive DNA sequences by transcription in yeast. Genetics 143:713-721.
-
(1996)
Genetics
, vol.143
, pp. 713-721
-
-
Wierdl, M.1
Greene, C.N.2
Datta, A.3
Jinks-Robertson, S.4
Petes, T.D.5
-
77
-
-
0029141926
-
Preparation of megabase-size DNA from plant nuclei
-
Zhang HB, Zhao XP, Ding XL, Paterson AH,Wing RA. 1995. Preparation of megabase-size DNA from plant nuclei. Plant J. 7:175-184.
-
(1995)
Plant J
, vol.7
, pp. 175-184
-
-
Zhang, H.B.1
Zhao, X.P.2
Ding, X.L.3
Paterson Ahwing, R.A.4
|