The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Natali, Lucia ^a   Cossu, Rosa M ^a   Barghini, Elena ^a   Giordani, Tommaso ^a   Buti, Matteo ^a   Mascagni, Flavia ^a   Morgante, Michele ^b   Gill, Navdeep ^c   Kane, Nolan C ^c,d   Rieseberg, Loren ^c   Cavallini, Andrea ^a  

^a UNIVERSITY OF PISA   (Italy)

^b UNIVERSITY OF UDINE   (Italy)

^c UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^d UNIVERSITY OF COLORADO   (United States)

Author keywords

Genome structure; Next Generation Sequencing; Repetitive DNA; Retrotransposon; Sunflower

Indexed keywords

PLANT DNA; REPETITIVE DNA; RETROPOSON; SPACER DNA;

ACCURACY; ARTICLE; CONTIG MAPPING; DNA SEQUENCE; GENE LIBRARY; GENE SEQUENCE; GENETIC CODE; GENETIC DATABASE; GENETIC PROCEDURES; MOLECULAR EVOLUTION; NEXT GENERATION SEQUENCING; NONHUMAN; PLANT GENOME; RELIABILITY; RETROPOSON; SEQUENCE HOMOLOGY; SUNFLOWER; GENETICS; HIGH THROUGHPUT SEQUENCING; LONG TERMINAL REPEAT; NUCLEIC ACID DATABASE; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PLANT GENE; PROCEDURES;

DICOTYLEDONEAE; HELIANTHUS;

BASE SEQUENCE; DATABASES, NUCLEIC ACID; DNA, INTERGENIC; GENES, PLANT; GENOME, PLANT; HELIANTHUS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; REPETITIVE SEQUENCES, NUCLEIC ACID; RETROELEMENTS; TERMINAL REPEAT SEQUENCES;

EID: 84884959386     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-686     Document Type: Article

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