-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
40849083514
-
Functional organization of a plant Photosystem I: Evolution of a highly efficient photochemical machine
-
Amunts A, Nelson N. 2008. Functional organization of a plant Photosystem I: evolution of a highly efficient photochemical machine. Plant Physiol Biochem. 46: 228-237.
-
(2008)
Plant Physiol Biochem
, vol.46
, pp. 228-237
-
-
Amunts, A.1
Nelson, N.2
-
4
-
-
1942444640
-
Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome
-
Bachvaroff TR, Concepcion GT, Rogers CR, Herman EM, Delwiche CF. 2004. Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome. Protist 155: 65-78.
-
(2004)
Protist
, vol.155
, pp. 65-78
-
-
Bachvaroff, T.R.1
Concepcion, G.T.2
Rogers, C.R.3
Herman, E.M.4
Delwiche, C.F.5
-
5
-
-
33845320124
-
Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes
-
Barbrook AC, Santucci N, Plenderleith LJ, Hiller RG, Howe CJ. 2006. Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes. BMC Genomics 7: 297.
-
(2006)
BMC Genomics
, vol.7
, pp. 297
-
-
Barbrook, A.C.1
Santucci, N.2
Plenderleith, L.J.3
Hiller, R.G.4
Howe, C.J.5
-
6
-
-
0035210751
-
Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum
-
Barbrook AC, Symington H, Nisbet RE, Larkum A, Howe CJ. 2001. Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum. Mol Genet Genomics. 266: 632-638.
-
(2001)
Mol Genet Genomics
, vol.266
, pp. 632-638
-
-
Barbrook, A.C.1
Symington, H.2
Nisbet, R.E.3
Larkum, A.4
Howe, C.J.5
-
7
-
-
84862007700
-
Polyuridylylation and processing of transcripts from multiple gene minicircles in chloroplasts of the dinoflagellate Amphidinium carterae
-
Barbrook AC, et al. 2012. Polyuridylylation and processing of transcripts from multiple gene minicircles in chloroplasts of the dinoflagellate Amphidinium carterae. Plant Mol Biol. 79: 347-357.
-
(2012)
Plant Mol Biol
, vol.79
, pp. 347-357
-
-
Barbrook, A.C.1
-
8
-
-
0035997389
-
RNA editing by adenosine deaminases that act on RNA
-
Bass BL. 2002. RNA editing by adenosine deaminases that act on RNA. Annu Rev Biochem. 71: 817-846.
-
(2002)
Annu Rev Biochem
, vol.71
, pp. 817-846
-
-
Bass, B.L.1
-
9
-
-
84859996524
-
Symbiodinium transcriptomes: Genome insights into the dinoflagellate symbionts of reef-building corals
-
Bayer T, et al. 2012. Symbiodinium transcriptomes: genome insights into the dinoflagellate symbionts of reef-building corals. PLoS One 7: e35269.
-
(2012)
PLoS One
, vol.7
-
-
Bayer, T.1
-
11
-
-
67349147862
-
Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a foldingmodel for its divergent chloroplast 16S rRNA
-
Dang Y, Green BR. 2009. Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a foldingmodel for its divergent chloroplast 16S rRNA. Gene 442: 73-80.
-
(2009)
Gene
, vol.442
, pp. 73-80
-
-
Dang, Y.1
Green, B.R.2
-
12
-
-
77949313245
-
Long transcripts from dinoflagellate chloroplast minicircles suggest "rolling circle" transcription
-
Dang Y, Green BR. 2010. Long transcripts from dinoflagellate chloroplast minicircles suggest "rolling circle" transcription. J Biol Chem. 285: 5196-5203.
-
(2010)
J Biol Chem
, vol.285
, pp. 5196-5203
-
-
Dang, Y.1
Green, B.R.2
-
13
-
-
0027983037
-
Convergent evolution: The need to be explicit
-
Doolittle RF. 1994. Convergent evolution: the need to be explicit. Trends Biochem Sci. 19: 15-18.
-
(1994)
Trends Biochem Sci
, vol.19
, pp. 15-18
-
-
Doolittle, R.F.1
-
14
-
-
84869210902
-
Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors
-
Dorrell RG, Howe CJ. 2012a. Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors. Proc Natl Acad Sci U S A. 109: 18879-18884.
-
(2012)
Proc Natl Acad Sci U S A.
, vol.109
, pp. 18879-18884
-
-
Dorrell, R.G.1
Howe, C.J.2
-
15
-
-
84863100082
-
What makes a chloroplast? Reconstructing the establishment of photosynthetic symbioses
-
Dorrell RG, Howe CJ. 2012b. What makes a chloroplast? Reconstructing the establishment of photosynthetic symbioses. J Cell Sci. 125: 1865-1875.
-
(2012)
J Cell Sci
, vol.125
, pp. 1865-1875
-
-
Dorrell, R.G.1
Howe, C.J.2
-
16
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, et al. 2010. The Pfam protein families database. Nucleic Acids Res. 38:D211-D222.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
-
17
-
-
0043122944
-
ExPASy: The proteomics server for indepth protein knowledge and analysis
-
Gasteiger E, et al. 2003. ExPASy: the proteomics server for indepth protein knowledge and analysis. Nucleic Acids Res. 31: 3784-3788.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
-
18
-
-
77953162491
-
A long antisense RNA in plant chloroplasts
-
Georg J, Honsel A, Voss B, Rennenberg H, Hess WR. 2010. A long antisense RNA in plant chloroplasts. New Phytol. 186: 615-622.
-
(2010)
New Phytol
, vol.186
, pp. 615-622
-
-
Georg, J.1
Honsel, A.2
Voss, B.3
Rennenberg, H.4
Hess, W.R.5
-
19
-
-
0034729663
-
The origin of alternation of generations in land plants: A focus onmatrotrophy and hexose transport
-
Graham LK, Wilcox LW. 2000. The origin of alternation of generations in land plants: a focus onmatrotrophy and hexose transport. Philos Trans R Soc Lond B Biol Sci. 355: 757.
-
(2000)
Philos Trans R Soc Lond B Biol Sci
, vol.355
, pp. 757
-
-
Graham, L.K.1
Wilcox, L.W.2
-
20
-
-
1242265736
-
Migration of the plastid genome to the nucleus in a peridinin dinoflagellate
-
Hackett JD, et al. 2004. Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Curr Biol. 14: 213-218.
-
(2004)
Curr Biol
, vol.14
, pp. 213-218
-
-
Hackett, J.D.1
-
21
-
-
0035929245
-
"Empty" minicircles and petB/atpA and psbD/psbE (cytb559 alpha) genes in tandem in Amphidinium carterae plastid DNA
-
Hiller RG. 2001. "Empty" minicircles and petB/atpA and psbD/psbE (cytb559 alpha) genes in tandem in Amphidinium carterae plastid DNA. FEBS Lett. 505: 449-452.
-
(2001)
FEBS Lett
, vol.505
, pp. 449-452
-
-
Hiller, R.G.1
-
22
-
-
0028920225
-
The light-harvesting chlorophyll a-c-binding protein of dinoflagellates: A putative polyprotein
-
Hiller RG, Wrench PM, Sharples FP. 1995. The light-harvesting chlorophyll a-c-binding protein of dinoflagellates: a putative polyprotein. FEBS Lett. 363: 175-178.
-
(1995)
FEBS Lett
, vol.363
, pp. 175-178
-
-
Hiller, R.G.1
Wrench, P.M.2
Sharples, F.P.3
-
23
-
-
79955123430
-
Evolution of lightharvesting complex proteins from Chl c-containing algae
-
Hoffman GE, Sanchez Puerta MV, Delwiche CF. 2011. Evolution of lightharvesting complex proteins from Chl c-containing algae. BMC Evol Biol. 11: 101.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 101
-
-
Hoffman, G.E.1
Sanchez Puerta, M.V.2
Delwiche, C.F.3
-
24
-
-
43049169011
-
The remarkable chloroplast genome of dinoflagellates
-
Howe CJ, Nisbet RE, Barbrook AC. 2008. The remarkable chloroplast genome of dinoflagellates. J Exp Bot. 59: 1035-1045.
-
(2008)
J Exp Bot
, vol.59
, pp. 1035-1045
-
-
Howe, C.J.1
Nisbet, R.E.2
Barbrook, A.C.3
-
25
-
-
0037471714
-
Evolution of the chloroplast genome
-
Howe CJ, et al. 2003. Evolution of the chloroplast genome. Philos Trans R Soc Lond B Biol Sci. 358: 97-99.
-
(2003)
Philos Trans R Soc Lond B Biol Sci
, vol.358
, pp. 97-99
-
-
Howe, C.J.1
-
26
-
-
84875620376
-
A tertiary plastid gains RNA editing in its new host
-
Jackson CJ, Gornik SG, Waller RF. 2013. A tertiary plastid gains RNA editing in its new host. Mol Biol Evol. 30: 788-792.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 788-792
-
-
Jackson, C.J.1
Gornik, S.G.2
Waller, R.F.3
-
27
-
-
77954636478
-
A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
-
Janouskovec J, Horak A, Obornik M, Lukes J, Keeling PJ. 2010. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Natl Acad Sci U S A. 107: 10949-10954.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 10949-10954
-
-
Janouskovec, J.1
Horak, A.2
Obornik, M.3
Lukes, J.4
Keeling, P.J.5
-
28
-
-
84888586835
-
Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia
-
Janouskovec J, et al. 2013. Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Mol Biol Evol. 30: 2447-2462.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2447-2462
-
-
Janouskovec, J.1
-
29
-
-
0000854319
-
Construction of an obligate photoheterotrophic mutant of the cyanobacterium Synechocystis 6803: Inactivation of the psbA gene family
-
Jansson C, Debus RJ, Osiewacz HD, Gurevitz M, McIntosh L. 1987. Construction of an obligate photoheterotrophic mutant of the cyanobacterium Synechocystis 6803: inactivation of the psbA gene family. Plant Physiol. 85: 1021-1025.
-
(1987)
Plant Physiol
, vol.85
, pp. 1021-1025
-
-
Jansson, C.1
Debus, R.J.2
Osiewacz, H.D.3
Gurevitz, M.4
McIntosh, L.5
-
30
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
31
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30: 3059-3066.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
32
-
-
0041620359
-
MATRAS: A program for protein 3D structure comparison
-
Kawabata T. 2003. MATRAS: a program for protein 3D structure comparison. Nucleic Acids Res. 31: 3367-3369.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3367-3369
-
-
Kawabata, T.1
-
33
-
-
77349112000
-
The endosymbiotic origin, diversification and fate of plastids
-
Keeling PJ. 2010. The endosymbiotic origin, diversification and fate of plastids. Philos Trans R Soc Lond B Biol Sci. 365: 729-748.
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, pp. 729-748
-
-
Keeling, P.J.1
-
34
-
-
58149193233
-
The SWISSMODEL Repository and associated resources
-
Kiefer F, Arnold K, Kunzli M, Bordoli L, Schwede T. 2009. The SWISSMODEL Repository and associated resources. Nucleic Acids Res. 37: D387-92.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
35
-
-
84886042057
-
MarinegenomicsDB: An integrated genome viewer for community-based annotation of genomes
-
Koyanagi R, et al. 2013. MarinegenomicsDB: an integrated genome viewer for community-based annotation of genomes. Zool Sci. 30: 797-800.
-
(2013)
Zool Sci
, vol.30
, pp. 797-800
-
-
Koyanagi, R.1
-
36
-
-
0028178516
-
The assembly of cytochrome b6/f complexes: An approach using genetic transformation of the green alga Chlamydomonas reinhardtii
-
Kuras R, Wollman FA. 1994. The assembly of cytochrome b6/f complexes: an approach using genetic transformation of the green alga Chlamydomonas reinhardtii. EMBO J. 13: 1019-1027.
-
(1994)
EMBO J.
, vol.13
, pp. 1019-1027
-
-
Kuras, R.1
Wollman, F.A.2
-
37
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
38
-
-
36448991500
-
ClustalWand Clustal X version 2.0
-
Larkin MA, et al. 2007. ClustalWand Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
39
-
-
64549148801
-
The replication of plastid minicircles involves rolling circle intermediates
-
Leung SK, Wong JT. 2009. The replication of plastid minicircles involves rolling circle intermediates. Nucleic Acids Res. 37: 1991-2002.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1991-2002
-
-
Leung, S.K.1
Wong, J.T.2
-
40
-
-
77949587649
-
Fast and accurate long-read alignmentwith Burrows- Wheeler transform
-
Li H, Durbin R. 2010. Fast and accurate long-read alignmentwith Burrows- Wheeler transform. Bioinformatics 26: 589-595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
41
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, et al. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
42
-
-
0036303481
-
Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates
-
Lin S, Zhang H, Spencer DF, Norman JE, GrayMW. 2002. Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates. J Mol Biol. 320: 727-739.
-
(2002)
J Mol Biol
, vol.320
, pp. 727-739
-
-
Lin, S.1
Zhang, H.2
Spencer, D.F.3
Norman, J.E.4
Gray, M.W.5
-
43
-
-
84858328300
-
Widespread RNA and DNA sequence differences in the human transcriptome."
-
Comment On; author reply 1302
-
Lin W, Piskol R, Tan MH, Li JB. 2012. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome." Science 335: 1302; author reply 1302.
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Lin, W.1
Piskol, R.2
Tan, M.H.3
Li, J.B.4
-
44
-
-
67650297002
-
Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans and dinoflagellates
-
Lukes J, Leander BS, Keeling PJ. 2009. Cascades of convergent evolution: the corresponding evolutionary histories of euglenozoans and dinoflagellates. Proc Natl Acad Sci U S A. 106(Suppl), 9963-9970.
-
(2009)
Proc Natl Acad Sci U S A.
, vol.106
, Issue.SUPPL.
, pp. 9963-9970
-
-
Lukes, J.1
Leander, B.S.2
Keeling, P.J.3
-
45
-
-
84885985865
-
RNase J participates in a pentatricopeptide repeat protein-mediated 5' end maturation of chloroplast mRNAs
-
Luro S, Germain A, Sharwood RE, Stern DB. 2013. RNase J participates in a pentatricopeptide repeat protein-mediated 5' end maturation of chloroplast mRNAs. Nucleic Acids Res. 41: 9141-9151.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 9141-9151
-
-
Luro, S.1
Germain, A.2
Sharwood, R.E.3
Stern, D.B.4
-
46
-
-
84892547787
-
Massively convergent evolution for ribosomal protein gene content in plastid and mitochondrial genomes
-
Maier UG, et al. 2013. Massively convergent evolution for ribosomal protein gene content in plastid and mitochondrial genomes. Genome Biol Evol. 5: 2318-2329.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 2318-2329
-
-
Maier, U.G.1
-
47
-
-
0036845754
-
The Chlamydomonas reinhardtii plastid chromosome: Islands of genes in a sea of repeats
-
Maul JE, et al. 2002. The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell 14: 2659-2679.
-
(2002)
Plant Cell
, vol.14
, pp. 2659-2679
-
-
Maul, J.E.1
-
48
-
-
79953715968
-
Mechanismof plastid division: From a bacterium to an organelle
-
Miyagishima SY. 2011. Mechanismof plastid division: from a bacterium to an organelle. Plant Physiol. 155: 1533-1544.
-
(2011)
Plant Physiol
, vol.155
, pp. 1533-1544
-
-
Miyagishima, S.Y.1
-
49
-
-
0344465344
-
Highly organized structure in the non-coding region of the psbA minicircle from clade C Symbiodinium
-
Moore RB, Ferguson KM, Loh WK, Hoegh-Guldberg O, Carter DA. 2003. Highly organized structure in the non-coding region of the psbA minicircle from clade C Symbiodinium. Int J Syst Evol Microbiol. 53: 1725-1734.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1725-1734
-
-
Moore, R.B.1
Ferguson, K.M.2
Loh, W.K.3
Hoegh-Guldberg, O.4
Carter, D.A.5
-
50
-
-
79959830057
-
Transcriptomic response of the red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition
-
Morey JS, et al. 2011. Transcriptomic response of the red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition. BMC Genomics 12: 346.
-
(2011)
BMC Genomics
, vol.12
, pp. 346
-
-
Morey, J.S.1
-
51
-
-
34547588704
-
KAAS: An automatic genome annotation and pathway reconstruction server
-
Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. 2007. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35:W182-W185.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.C.4
Kanehisa, M.5
-
52
-
-
84863957655
-
Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants
-
Nakamura T, Yagi Y, Kobayashi K. 2012. Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants. Plant Cell Physiol. 53: 1171-1179.
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 1171-1179
-
-
Nakamura, T.1
Yagi, Y.2
Kobayashi, K.3
-
53
-
-
84877654048
-
Photosystem II assembly: From cyanobacteria to plants
-
Nickelsen J, Rengstl B. 2013. Photosystem II assembly: from cyanobacteria to plants. Annu Rev Plant Biol. 64: 609-635.
-
(2013)
Annu Rev Plant Biol
, vol.64
, pp. 609-635
-
-
Nickelsen, J.1
Rengstl, B.2
-
54
-
-
11144331773
-
Novel plastid gene minicircles in the dinoflagellate Amphidinium operculatum
-
Nisbet RE, Koumandou L, Barbrook AC, Howe CJ. 2004. Novel plastid gene minicircles in the dinoflagellate Amphidinium operculatum. Gene 331: 141-147.
-
(2004)
Gene
, vol.331
, pp. 141-147
-
-
Nisbet, R.E.1
Koumandou, L.2
Barbrook, A.C.3
Howe, C.J.4
-
55
-
-
84856233652
-
Morphology, ultrastructure and life cycle of Vitrella brassicaformis n sp, n gen, a novel chromerid from the Great Barrier Reef
-
Obornik M, et al. 2012. Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef. Protist 163: 306-323.
-
(2012)
Protist
, vol.163
, pp. 306-323
-
-
Obornik, M.1
-
56
-
-
0037572303
-
Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae
-
Ohta N, et al. 2003. Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res. 10: 67-77.
-
(2003)
DNA Res
, vol.10
, pp. 67-77
-
-
Ohta, N.1
-
57
-
-
84858328300
-
Widespread RNA and DNA sequence differences in the human transcriptome
-
Comment On; author reply 1302
-
Pickrell JK, Gilad Y, Pritchard JK. 2012. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome." Science 335: 1302; author reply 1302.
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Pickrell, J.K.1
Gilad, Y.2
Pritchard, J.K.3
-
58
-
-
34748924950
-
Pentatricopeptide repeat proteins in Trypanosoma brucei function in mitochondrial ribosomes
-
Pusnik M, Small I, Read LK, Fabbro T, Schneider A. 2007. Pentatricopeptide repeat proteins in Trypanosoma brucei function in mitochondrial ribosomes. Mol Cell Biol. 27: 6876-6888.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 6876-6888
-
-
Pusnik, M.1
Small, I.2
Read, L.K.3
Fabbro, T.4
Schneider, A.5
-
59
-
-
84860692434
-
A-to-I RNA editing: Effects on proteins key to neural excitability
-
Rosenthal JJ, Seeburg PH. 2012. A-to-I RNA editing: effects on proteins key to neural excitability. Neuron 74: 432-439.
-
(2012)
Neuron
, vol.74
, pp. 432-439
-
-
Rosenthal, J.J.1
Seeburg, P.H.2
-
60
-
-
34548133226
-
A hypothesis on the identification of the editing enzyme in plant organelles
-
Salone V, et al. 2007. A hypothesis on the identification of the editing enzyme in plant organelles. FEBS Lett. 581: 4132-4138.
-
(2007)
FEBS Lett
, vol.581
, pp. 4132-4138
-
-
Salone, V.1
-
61
-
-
23144460836
-
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
-
DOI 10.1093/nar/gki366
-
Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686-W689. (Pubitemid 44530010)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS
-
-
Schattner, P.1
Brooks, A.N.2
Lowe, T.M.3
-
62
-
-
56549095978
-
Pentatricopeptide repeat proteins: A socket set for organelle gene expression
-
Schmitz-Linneweber C, Small I. 2008. Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13: 663-670.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 663-670
-
-
Schmitz-Linneweber, C.1
Small, I.2
-
63
-
-
79958770092
-
Photosystem I: Its biogenesis and function in higher plants
-
Schottler MA, Albus CA, Bock R. 2011. Photosystem I: its biogenesis and function in higher plants. J Plant Physiol. 168: 1452-1461.
-
(2011)
J Plant Physiol
, vol.168
, pp. 1452-1461
-
-
Schottler, M.A.1
Albus, C.A.2
Bock, R.3
-
64
-
-
0035283304
-
Reducing the genome size of organelles favours gene transfer to the nucleus
-
Selosse M, Albert B, Godelle B. 2001. Reducing the genome size of organelles favours gene transfer to the nucleus. Trends Ecol Evol. 16: 135-141.
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 135-141
-
-
Selosse, M.1
Albert, B.2
Godelle, B.3
-
65
-
-
84881317368
-
Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure
-
Shoguchi E, et al. 2013. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr Biol. 23: 1399-1408.
-
(2013)
Curr Biol
, vol.23
, pp. 1399-1408
-
-
Shoguchi, E.1
-
66
-
-
0026006390
-
Targeted genetic inactivation of the photosystemI reaction center in the cyanobacterium Synechocystis sp. PCC 6803
-
Smart LB, Anderson SL, McIntosh L. 1991. Targeted genetic inactivation of the photosystemI reaction center in the cyanobacterium Synechocystis sp. PCC 6803. EMBO J. 10: 3289-3296.
-
(1991)
EMBO J.
, vol.10
, pp. 3289-3296
-
-
Smart, L.B.1
Anderson, S.L.2
McIntosh, L.3
-
67
-
-
41949121273
-
Heat stress causes inhibition of the de novo synthesis of antenna proteins and photobleaching in cultured Symbiodinium
-
Takahashi S, Whitney S, Itoh S, Maruyama T, Badger M. 2008. Heat stress causes inhibition of the de novo synthesis of antenna proteins and photobleaching in cultured Symbiodinium. Proc Natl Acad Sci U S A. 105: 4203-4208.
-
(2008)
Proc Natl Acad Sci U S A.
, vol.105
, pp. 4203-4208
-
-
Takahashi, S.1
Whitney, S.2
Itoh, S.3
Maruyama, T.4
Badger, M.5
-
68
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
69
-
-
32644474412
-
Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium
-
Wang Y, Morse D. 2006. Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium. Nucleic Acids Res. 34: 613-619.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 613-619
-
-
Wang, Y.1
Morse, D.2
-
71
-
-
0007691921
-
The structure, function and biogenesis of cytochrome b6f Complexes
-
Rochaix JD, Goldschmidt-Clermont M, Merchant S, editors. The Netherlands: Springer
-
Wollman FA. 1998. The structure, function and biogenesis of cytochrome b6f Complexes. In: Rochaix JD, Goldschmidt-Clermont M, Merchant S, editors. The molecular biology of chloroplasts and mitochondria in Chlamydomonas. The Netherlands: Springer. p. 459-476.
-
(1998)
The Molecular Biology of Chloroplasts and Mitochondria in Chlamydomonas
, pp. 459-476
-
-
Wollman, F.A.1
-
72
-
-
79955550076
-
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
-
Yamashita R, et al. 2011. Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis. Genome Res. 21: 775-789.
-
(2011)
Genome Res
, vol.21
, pp. 775-789
-
-
Yamashita, R.1
-
73
-
-
48849111306
-
Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles
-
Yura K, Go M. 2008. Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles. BMC Plant Biol. 8: 79.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 79
-
-
Yura, K.1
Go, M.2
-
74
-
-
8844264552
-
Substitutional editing of transcripts from genes of cyanobacterial origin in the dinoflagellate Ceratium horridum
-
Zauner S, Greilinger D, Laatsch T, Kowallik K V, Maier UG. 2004. Substitutional editing of transcripts from genes of cyanobacterial origin in the dinoflagellate Ceratium horridum. FEBS Lett. 577: 535-538.
-
(2004)
FEBS Lett
, vol.577
, pp. 535-538
-
-
Zauner, S.1
Greilinger, D.2
Laatsch, T.3
Kowallik, K.V.4
Maier, U.G.5
-
75
-
-
40549142072
-
Mitochondrial cob and cox1 genes and editing of the corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with special reference to the phylogenetic position of the genus Dinophysis
-
Zhang H, Bhattacharya D, Maranda L, Lin S. 2008. Mitochondrial cob and cox1 genes and editing of the corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with special reference to the phylogenetic position of the genus Dinophysis. Appl EnvironMicrobiol. 74: 1546-1554.
-
(2008)
Appl EnvironMicrobiol
, vol.74
, pp. 1546-1554
-
-
Zhang, H.1
Bhattacharya, D.2
Maranda, L.3
Lin, S.4
-
76
-
-
0034910778
-
A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate
-
Zhang Z, Cavalier-Smith T, Green BR. 2001. A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate. Mol Biol Evol. 18: 1558-1565.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1558-1565
-
-
Zhang, Z.1
Cavalier-Smith, T.2
Green, B.R.3
-
77
-
-
0036215266
-
Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their putative replicon origins
-
Zhang Z, Cavalier-Smith T, Green BR. 2002. Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their putative replicon origins. Mol Biol Evol. 19: 489-500.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 489-500
-
-
Zhang, Z.1
Cavalier-Smith, T.2
Green, B.R.3
-
78
-
-
0033536215
-
Single gene circles in dinoflagellate chloroplast genomes
-
Zhang Z, Green BR, Cavalier-Smith T. 1999. Single gene circles in dinoflagellate chloroplast genomes. Nature 400: 155-159.
-
(1999)
Nature
, vol.400
, pp. 155-159
-
-
Zhang, Z.1
Green, B.R.2
Cavalier-Smith, T.3
-
79
-
-
0030614556
-
Mutations of cytochrome b6 in Chlamydomonas reinhardtii disclose the functional significance for a proline to leucine conversion by petB editing in maize and tobacco
-
Zito F, Kuras R, Choquet Y, Kossel H, Wollman FA. 1997. Mutations of cytochrome b6 in Chlamydomonas reinhardtii disclose the functional significance for a proline to leucine conversion by petB editing in maize and tobacco. Plant Mol Biol. 33: 79-86. Technology Technology
-
(1997)
Plant Mol Biol
, vol.33
, pp. 79-86
-
-
Zito, F.1
Kuras, R.2
Choquet, Y.3
Kossel, H.4
Wollman, F.A.5
|