메뉴 건너뛰기




Volumn 7, Issue , 2006, Pages

Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; TRANSFER RNA;

EID: 33845320124     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-297     Document Type: Article
Times cited : (41)

References (39)
  • 1
    • 0033536215 scopus 로고    scopus 로고
    • Single gene circles in dinoflagellate chloroplast genomes
    • Zhang Z, Green BR, Cavalier-Smith T: Single gene circles in dinoflagellate chloroplast genomes. Nature 1999, 400:155-159.
    • (1999) Nature , vol.400 , pp. 155-159
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3
  • 2
    • 0033834347 scopus 로고    scopus 로고
    • Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum
    • Barbrook AC, Howe CJ: Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum. Mol Gen Genet 2000, 263:152-158.
    • (2000) Mol Gen Genet , vol.263 , pp. 152-158
    • Barbrook, A.C.1    Howe, C.J.2
  • 3
    • 0035929245 scopus 로고    scopus 로고
    • 559 α) genes in tandem in Amphidinium carterae plastid DNA
    • 559 α) genes in tandem in Amphidinium carterae plastid DNA. FEBS Lett 2001, 505:449-452.
    • (2001) FEBS Lett , vol.505 , pp. 449-452
    • Hiller, R.G.1
  • 4
    • 3042692463 scopus 로고    scopus 로고
    • Plastid-derived single gene minicircles of the dinoflagellate Ceratium horridum are localized in the nucleus
    • Laatsch T, Zauner S, Stoebe-Maler B, Kowallik KV, Maier U-G: Plastid-derived single gene minicircles of the dinoflagellate Ceratium horridum are localized in the nucleus. Mol Biol Evol 2004, 21:1318-1322.
    • (2004) Mol Biol Evol , vol.21 , pp. 1318-1322
    • Laatsch, T.1    Zauner, S.2    Stoebe-Maler, B.3    Kowallik, K.V.4    Maier, U.-G.5
  • 5
    • 24944505217 scopus 로고    scopus 로고
    • Double hairpin elements and tandem repeats in the non-coding region of Adenoides eludens chloroplast gene minicircles
    • Nelson MJ, Green BR: Double hairpin elements and tandem repeats in the non-coding region of Adenoides eludens chloroplast gene minicircles. Gene 2005, 358:102-110.
    • (2005) Gene , vol.358 , pp. 102-110
    • Nelson, M.J.1    Green, B.R.2
  • 8
    • 1942444640 scopus 로고    scopus 로고
    • Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome
    • Bachvaroff TR, Concepcion GT, Rogers CR, Herman EM, Delwiche C: Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome. Protist 2004, 155:65-78.
    • (2004) Protist , vol.155 , pp. 65-78
    • Bachvaroff, T.R.1    Concepcion, G.T.2    Rogers, C.R.3    Herman, E.M.4    Delwiche, C.5
  • 9
    • 4644285876 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum during dark phase
    • Tanikawa N, Akimoto H, Ogoh K, Chun W, Ohmiya Y: Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum during dark phase. Photochem Photobiol 2004, 80:31-35.
    • (2004) Photochem Photobiol , vol.80 , pp. 31-35
    • Tanikawa, N.1    Akimoto, H.2    Ogoh, K.3    Chun, W.4    Ohmiya, Y.5
  • 11
    • 33645791470 scopus 로고    scopus 로고
    • The plastid-encoded psbA gene in the dinoflagellate Gonyoulax is not encoded on a minicircle
    • Wang Y, Morse D: The plastid-encoded psbA gene in the dinoflagellate Gonyoulax is not encoded on a minicircle. Gene 2006, 371:206-210.
    • (2006) Gene , vol.371 , pp. 206-210
    • Wang, Y.1    Morse, D.2
  • 12
    • 0035984030 scopus 로고    scopus 로고
    • The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications
    • Simpson CL, Stern DB: The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications. Plant Physiol 2002, 129:957-966.
    • (2002) Plant Physiol , vol.129 , pp. 957-966
    • Simpson, C.L.1    Stern, D.B.2
  • 13
    • 11144331773 scopus 로고    scopus 로고
    • Novel plastid gene minicircles in the dinoflagellate Amphidinium operculatum
    • Nisbet RER, Koumandou VL, Barbrook AC, Howe CJ: Novel plastid gene minicircles in the dinoflagellate Amphidinium operculatum. Gene 2004, 331:141-147.
    • (2004) Gene , vol.331 , pp. 141-147
    • Nisbet, R.E.R.1    Koumandou, V.L.2    Barbrook, A.C.3    Howe, C.J.4
  • 14
    • 0034910778 scopus 로고    scopus 로고
    • A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate
    • Zhang Z, Cavalier-Smith T, Green BR: A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate. Mol Biol Evol 2001, 18:1558-1565.
    • (2001) Mol Biol Evol , vol.18 , pp. 1558-1565
    • Zhang, Z.1    Cavalier-Smith, T.2    Green, B.R.3
  • 15
    • 0035210751 scopus 로고    scopus 로고
    • Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum
    • Barbrook AC, Symington H, Nisbet RER, Larkum A, Howe CJ: Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum. Mol Genet Genomics 2001, 266:632-638.
    • (2001) Mol Genet Genomics , vol.266 , pp. 632-638
    • Barbrook, A.C.1    Symington, H.2    Nisbet, R.E.R.3    Larkum, A.4    Howe, C.J.5
  • 16
    • 0036215266 scopus 로고    scopus 로고
    • Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their replicon origins
    • Zhang Z Cavalier-Smith T, Green BR: Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their replicon origins. Mol Biol Evol 2002, 19:489-500.
    • (2002) Mol Biol Evol , vol.19 , pp. 489-500
    • Zhang, Z.1    Cavalier-Smith, T.2    Green, B.R.3
  • 17
    • 0038480129 scopus 로고    scopus 로고
    • Comparison of phylogenies based on nuclear-encoded SSU rDNA and plastid-encoded psbA in the symbiotic dinoflagellate genus Symbiodinium
    • Takashita K, Ishikura M, Koike K, Maruyame T: Comparison of phylogenies based on nuclear-encoded SSU rDNA and plastid-encoded psbA in the symbiotic dinoflagellate genus Symbiodinium. Phycologia 2003, 42:2850-291.
    • (2003) Phycologia , vol.42 , pp. 2850-2891
    • Takashita, K.1    Ishikura, M.2    Koike, K.3    Maruyame, T.4
  • 18
    • 14544267655 scopus 로고    scopus 로고
    • Synthesis and degradation of dinoflagellate plastid-encoded psbA proteins are light-regulated, not circadian-regulated
    • Wang Y, Jensen L, Højrup P, Morse D: Synthesis and degradation of dinoflagellate plastid-encoded psbA proteins are light-regulated, not circadian-regulated. Proc Natl Acad Sci USA 2005, 102:2844-2849.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 2844-2849
    • Wang, Y.1    Jensen, L.2    Højrup, P.3    Morse, D.4
  • 20
    • 33744942629 scopus 로고    scopus 로고
    • Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase
    • Kawai M, Uchiyama I, Kobayashi I: Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase. DNA Res 2005, 12:389-401.
    • (2005) DNA Res , vol.12 , pp. 389-401
    • Kawai, M.1    Uchiyama, I.2    Kobayashi, I.3
  • 21
    • 0033929166 scopus 로고    scopus 로고
    • Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: A possible common origin of sporozoan and dinoflagellate plastids
    • Zhang Z, Green BR, Cavalier-Smith T: Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin of sporozoan and dinoflagellate plastids. J Mol Evol 2000, 51:26-40.
    • (2000) J Mol Evol , vol.51 , pp. 26-40
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3
  • 22
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nuc Acids Res 1997, 25:955-964.
    • (1997) Nuc Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 24
    • 0035967880 scopus 로고    scopus 로고
    • FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
    • Shi J, Blundell TL, Mizuguchi K: FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J Mol Biol 2001, 310:243-257.
    • (2001) J Mol Biol , vol.310 , pp. 243-257
    • Shi, J.1    Blundell, T.L.2    Mizuguchi, K.3
  • 26
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
    • Ban N, Nissen P, Hansen J, Moore PB, Steiz TA: The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 2000, 289:905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steiz, T.A.5
  • 27
    • 0036655744 scopus 로고    scopus 로고
    • Evolution of length variation and heteroplasmy in the chloroplast rDNA of symbiotic dinoflagellates (Symbiodinium, Dinophyta) and a novel insertion in the universal core region of the large subunit rDNA
    • Santos SR, Taylor DJ, Kinzie RA III, Sakai K, Coffroth MA: Evolution of length variation and heteroplasmy in the chloroplast rDNA of symbiotic dinoflagellates (Symbiodinium, Dinophyta) and a novel insertion in the universal core region of the large subunit rDNA. Phycologia 2002, 41:311-318.
    • (2002) Phycologia , vol.41 , pp. 311-318
    • Santos, S.R.1    Taylor, D.J.2    Kinzie III, R.A.3    Sakai, K.4    Coffroth, M.A.5
  • 30
    • 0344861878 scopus 로고    scopus 로고
    • Mitochondrial genomes: Anything goes
    • Burger G, Gray MW, Lang BF: Mitochondrial genomes: anything goes. Trends Genet 2003, 19:709-716.
    • (2003) Trends Genet , vol.19 , pp. 709-716
    • Burger, G.1    Gray, M.W.2    Lang, B.F.3
  • 31
    • 0028125575 scopus 로고
    • Initiator transfer RNAs
    • RajBhandary UL: Initiator transfer RNAs. J Bacterial 1994, 176:547-552.
    • (1994) J Bacterial , vol.176 , pp. 547-552
    • RajBhandary, U.L.1
  • 32
    • 32544451561 scopus 로고    scopus 로고
    • Why are plastid genomes retained in non-photosynthetic organisms?
    • Barbrook AC, Howe CJ, Purton S: Why are plastid genomes retained in non-photosynthetic organisms? Trends Plant Sci 2006, 11:101-108.
    • (2006) Trends Plant Sci , vol.11 , pp. 101-108
    • Barbrook, A.C.1    Howe, C.J.2    Purton, S.3
  • 33
    • 0034578344 scopus 로고    scopus 로고
    • Mitochondrial tRNA import: Are there distinct mechanisms?
    • Schneider A, Marechal-Drouard L: Mitochondrial tRNA import: are there distinct mechanisms? Trends Cell Biol 2000, 10:509-513.
    • (2000) Trends Cell Biol , vol.10 , pp. 509-513
    • Schneider, A.1    Marechal-Drouard, L.2
  • 35
    • 0142119484 scopus 로고    scopus 로고
    • Viewing and annotating sequence data with Artemis
    • Berriman M, Rutherford K: Viewing and annotating sequence data with Artemis. Brief Bioinform 2003, 4:124-132.
    • (2003) Brief Bioinform , vol.4 , pp. 124-132
    • Berriman, M.1    Rutherford, K.2
  • 37
    • 0032964297 scopus 로고    scopus 로고
    • Blast 2 sequences - A new tool for comparing protein and nucleotide sequences
    • Tatusova TA, Madden TL: Blast 2 sequences - a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 1999, 174:247-250.
    • (1999) FEMS Microbiol Lett , vol.174 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 38
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M: Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 39
    • 0346494971 scopus 로고    scopus 로고
    • The tmRNA website: Reductive evolution of tm RNA in plastids and other endosymbionts
    • Gueneau de Novoa P, Williams KP: The tmRNA website: reductive evolution of tm RNA in plastids and other endosymbionts. Nucleic Acids Res 2004, 32:D104-D108.
    • (2004) Nucleic Acids Res , vol.32
    • Gueneau de Novoa, P.1    Williams, K.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.