-
1
-
-
0033536215
-
Single gene circles in dinoflagellate chloroplast genomes
-
Zhang Z, Green BR, Cavalier-Smith T: Single gene circles in dinoflagellate chloroplast genomes. Nature 1999, 400:155-159.
-
(1999)
Nature
, vol.400
, pp. 155-159
-
-
Zhang, Z.1
Green, B.R.2
Cavalier-Smith, T.3
-
2
-
-
0033834347
-
Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum
-
Barbrook AC, Howe CJ: Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum. Mol Gen Genet 2000, 263:152-158.
-
(2000)
Mol Gen Genet
, vol.263
, pp. 152-158
-
-
Barbrook, A.C.1
Howe, C.J.2
-
3
-
-
0035929245
-
559 α) genes in tandem in Amphidinium carterae plastid DNA
-
559 α) genes in tandem in Amphidinium carterae plastid DNA. FEBS Lett 2001, 505:449-452.
-
(2001)
FEBS Lett
, vol.505
, pp. 449-452
-
-
Hiller, R.G.1
-
4
-
-
3042692463
-
Plastid-derived single gene minicircles of the dinoflagellate Ceratium horridum are localized in the nucleus
-
Laatsch T, Zauner S, Stoebe-Maler B, Kowallik KV, Maier U-G: Plastid-derived single gene minicircles of the dinoflagellate Ceratium horridum are localized in the nucleus. Mol Biol Evol 2004, 21:1318-1322.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1318-1322
-
-
Laatsch, T.1
Zauner, S.2
Stoebe-Maler, B.3
Kowallik, K.V.4
Maier, U.-G.5
-
5
-
-
24944505217
-
Double hairpin elements and tandem repeats in the non-coding region of Adenoides eludens chloroplast gene minicircles
-
Nelson MJ, Green BR: Double hairpin elements and tandem repeats in the non-coding region of Adenoides eludens chloroplast gene minicircles. Gene 2005, 358:102-110.
-
(2005)
Gene
, vol.358
, pp. 102-110
-
-
Nelson, M.J.1
Green, B.R.2
-
6
-
-
1942422299
-
Dinoflagellate chloroplasts - Where have all the genes gone?
-
Koumandou VL, Nisbet RER, Barbrook AC, Howe CJ: Dinoflagellate chloroplasts - where have all the genes gone? Trends Genet 2004, 20:261-267.
-
(2004)
Trends Genet
, vol.20
, pp. 261-267
-
-
Koumandou, V.L.1
Nisbet, R.E.R.2
Barbrook, A.C.3
Howe, C.J.4
-
7
-
-
1242265736
-
Migration of the plastid genome to the nucleus in a peridinin dinoflagellate
-
Hackett JD, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Nosenko T, Bhattacharya D: Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Curr Biol 2004, 14:213-218.
-
(2004)
Curr Biol
, vol.14
, pp. 213-218
-
-
Hackett, J.D.1
Yoon, H.S.2
Soares, M.B.3
Bonaldo, M.F.4
Casavant, T.L.5
Nosenko, T.6
Bhattacharya, D.7
-
8
-
-
1942444640
-
Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome
-
Bachvaroff TR, Concepcion GT, Rogers CR, Herman EM, Delwiche C: Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome. Protist 2004, 155:65-78.
-
(2004)
Protist
, vol.155
, pp. 65-78
-
-
Bachvaroff, T.R.1
Concepcion, G.T.2
Rogers, C.R.3
Herman, E.M.4
Delwiche, C.5
-
9
-
-
4644285876
-
Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum during dark phase
-
Tanikawa N, Akimoto H, Ogoh K, Chun W, Ohmiya Y: Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum during dark phase. Photochem Photobiol 2004, 80:31-35.
-
(2004)
Photochem Photobiol
, vol.80
, pp. 31-35
-
-
Tanikawa, N.1
Akimoto, H.2
Ogoh, K.3
Chun, W.4
Ohmiya, Y.5
-
10
-
-
17544368557
-
Complex protein targeting to dinoflagellate plastids
-
Patron NJ, Waller RF, Archibald JM, Keeling PJ: Complex protein targeting to dinoflagellate plastids. J Mol Biol 2005, 348:1015-1024.
-
(2005)
J Mol Biol
, vol.348
, pp. 1015-1024
-
-
Patron, N.J.1
Waller, R.F.2
Archibald, J.M.3
Keeling, P.J.4
-
11
-
-
33645791470
-
The plastid-encoded psbA gene in the dinoflagellate Gonyoulax is not encoded on a minicircle
-
Wang Y, Morse D: The plastid-encoded psbA gene in the dinoflagellate Gonyoulax is not encoded on a minicircle. Gene 2006, 371:206-210.
-
(2006)
Gene
, vol.371
, pp. 206-210
-
-
Wang, Y.1
Morse, D.2
-
12
-
-
0035984030
-
The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications
-
Simpson CL, Stern DB: The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications. Plant Physiol 2002, 129:957-966.
-
(2002)
Plant Physiol
, vol.129
, pp. 957-966
-
-
Simpson, C.L.1
Stern, D.B.2
-
13
-
-
11144331773
-
Novel plastid gene minicircles in the dinoflagellate Amphidinium operculatum
-
Nisbet RER, Koumandou VL, Barbrook AC, Howe CJ: Novel plastid gene minicircles in the dinoflagellate Amphidinium operculatum. Gene 2004, 331:141-147.
-
(2004)
Gene
, vol.331
, pp. 141-147
-
-
Nisbet, R.E.R.1
Koumandou, V.L.2
Barbrook, A.C.3
Howe, C.J.4
-
14
-
-
0034910778
-
A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate
-
Zhang Z, Cavalier-Smith T, Green BR: A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate. Mol Biol Evol 2001, 18:1558-1565.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1558-1565
-
-
Zhang, Z.1
Cavalier-Smith, T.2
Green, B.R.3
-
15
-
-
0035210751
-
Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum
-
Barbrook AC, Symington H, Nisbet RER, Larkum A, Howe CJ: Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum. Mol Genet Genomics 2001, 266:632-638.
-
(2001)
Mol Genet Genomics
, vol.266
, pp. 632-638
-
-
Barbrook, A.C.1
Symington, H.2
Nisbet, R.E.R.3
Larkum, A.4
Howe, C.J.5
-
16
-
-
0036215266
-
Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their replicon origins
-
Zhang Z Cavalier-Smith T, Green BR: Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their replicon origins. Mol Biol Evol 2002, 19:489-500.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 489-500
-
-
Zhang, Z.1
Cavalier-Smith, T.2
Green, B.R.3
-
17
-
-
0038480129
-
Comparison of phylogenies based on nuclear-encoded SSU rDNA and plastid-encoded psbA in the symbiotic dinoflagellate genus Symbiodinium
-
Takashita K, Ishikura M, Koike K, Maruyame T: Comparison of phylogenies based on nuclear-encoded SSU rDNA and plastid-encoded psbA in the symbiotic dinoflagellate genus Symbiodinium. Phycologia 2003, 42:2850-291.
-
(2003)
Phycologia
, vol.42
, pp. 2850-2891
-
-
Takashita, K.1
Ishikura, M.2
Koike, K.3
Maruyame, T.4
-
18
-
-
14544267655
-
Synthesis and degradation of dinoflagellate plastid-encoded psbA proteins are light-regulated, not circadian-regulated
-
Wang Y, Jensen L, Højrup P, Morse D: Synthesis and degradation of dinoflagellate plastid-encoded psbA proteins are light-regulated, not circadian-regulated. Proc Natl Acad Sci USA 2005, 102:2844-2849.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2844-2849
-
-
Wang, Y.1
Jensen, L.2
Højrup, P.3
Morse, D.4
-
19
-
-
0035961748
-
Complete genome sequence of enterohemorrhagic Escherichia coli 0157:H7 and genomic comparison with a laboratory strain K-12
-
Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, Yokoyama K, Han C-G, Ohtsubo E, Nakayama K, Murata T, Tanaka M, Tobe T, Iida T, Takami H, Honda T, Sasakawa C, Ogasawara N, Yasunaga T, Kuhara S, Shiba T, Hattori M, Shinagawa H: Complete genome sequence of enterohemorrhagic Escherichia coli 0157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 2001, 8:11-22.
-
(2001)
DNA Res
, vol.8
, pp. 11-22
-
-
Hayashi, T.1
Makino, K.2
Ohnishi, M.3
Kurokawa, K.4
Ishii, K.5
Yokoyama, K.6
Han, C.-G.7
Ohtsubo, E.8
Nakayama, K.9
Murata, T.10
Tanaka, M.11
Tobe, T.12
Iida, T.13
Takami, H.14
Honda, T.15
Sasakawa, C.16
Ogasawara, N.17
Yasunaga, T.18
Kuhara, S.19
Shiba, T.20
Hattori, M.21
Shinagawa, H.22
more..
-
20
-
-
33744942629
-
Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase
-
Kawai M, Uchiyama I, Kobayashi I: Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase. DNA Res 2005, 12:389-401.
-
(2005)
DNA Res
, vol.12
, pp. 389-401
-
-
Kawai, M.1
Uchiyama, I.2
Kobayashi, I.3
-
21
-
-
0033929166
-
Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: A possible common origin of sporozoan and dinoflagellate plastids
-
Zhang Z, Green BR, Cavalier-Smith T: Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin of sporozoan and dinoflagellate plastids. J Mol Evol 2000, 51:26-40.
-
(2000)
J Mol Evol
, vol.51
, pp. 26-40
-
-
Zhang, Z.1
Green, B.R.2
Cavalier-Smith, T.3
-
22
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nuc Acids Res 1997, 25:955-964.
-
(1997)
Nuc Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
23
-
-
0037471714
-
Evolution of the chloroplast genome
-
Howe CJ, Barbrook AC, Koumandou VL, Nisbet RER, Symington H, Wightman TF: Evolution of the chloroplast genome. Phil Trans R Soc Land B 2002, 358:99-107.
-
(2002)
Phil Trans R Soc Land B
, vol.358
, pp. 99-107
-
-
Howe, C.J.1
Barbrook, A.C.2
Koumandou, V.L.3
Nisbet, R.E.R.4
Symington, H.5
Wightman, T.F.6
-
24
-
-
0035967880
-
FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
-
Shi J, Blundell TL, Mizuguchi K: FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J Mol Biol 2001, 310:243-257.
-
(2001)
J Mol Biol
, vol.310
, pp. 243-257
-
-
Shi, J.1
Blundell, T.L.2
Mizuguchi, K.3
-
25
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Müller KM, Pande N, Shang Z, Yu N, Gutell RR: The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 2002, 3:2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Müller, K.M.10
Pande, N.11
Shang, Z.12
Yu, N.13
Gutell, R.R.14
-
26
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
-
Ban N, Nissen P, Hansen J, Moore PB, Steiz TA: The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 2000, 289:905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steiz, T.A.5
-
27
-
-
0036655744
-
Evolution of length variation and heteroplasmy in the chloroplast rDNA of symbiotic dinoflagellates (Symbiodinium, Dinophyta) and a novel insertion in the universal core region of the large subunit rDNA
-
Santos SR, Taylor DJ, Kinzie RA III, Sakai K, Coffroth MA: Evolution of length variation and heteroplasmy in the chloroplast rDNA of symbiotic dinoflagellates (Symbiodinium, Dinophyta) and a novel insertion in the universal core region of the large subunit rDNA. Phycologia 2002, 41:311-318.
-
(2002)
Phycologia
, vol.41
, pp. 311-318
-
-
Santos, S.R.1
Taylor, D.J.2
Kinzie III, R.A.3
Sakai, K.4
Coffroth, M.A.5
-
28
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberley BT, Brodersen DE, Clemons WM Jr, Morgan-Warren RJ, Carter AP, Vonrheln C, Hartsch T, Ramakrishnan V: Structure of the 30S ribosomal subunit. Nature 2000, 407:327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberley, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrheln, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
29
-
-
0036382768
-
Modelling a minimal ribosome based on comparative sequence analysis
-
Mears JA, Cannone JJ, Stagg SM, Gutell RR, Agrawal RJ, Harvey SC: Modelling a minimal ribosome based on comparative sequence analysis. J Mol Biol 2002, 321:215-234.
-
(2002)
J Mol Biol
, vol.321
, pp. 215-234
-
-
Mears, J.A.1
Cannone, J.J.2
Stagg, S.M.3
Gutell, R.R.4
Agrawal, R.J.5
Harvey, S.C.6
-
31
-
-
0028125575
-
Initiator transfer RNAs
-
RajBhandary UL: Initiator transfer RNAs. J Bacterial 1994, 176:547-552.
-
(1994)
J Bacterial
, vol.176
, pp. 547-552
-
-
RajBhandary, U.L.1
-
32
-
-
32544451561
-
Why are plastid genomes retained in non-photosynthetic organisms?
-
Barbrook AC, Howe CJ, Purton S: Why are plastid genomes retained in non-photosynthetic organisms? Trends Plant Sci 2006, 11:101-108.
-
(2006)
Trends Plant Sci
, vol.11
, pp. 101-108
-
-
Barbrook, A.C.1
Howe, C.J.2
Purton, S.3
-
33
-
-
0034578344
-
Mitochondrial tRNA import: Are there distinct mechanisms?
-
Schneider A, Marechal-Drouard L: Mitochondrial tRNA import: are there distinct mechanisms? Trends Cell Biol 2000, 10:509-513.
-
(2000)
Trends Cell Biol
, vol.10
, pp. 509-513
-
-
Schneider, A.1
Marechal-Drouard, L.2
-
35
-
-
0142119484
-
Viewing and annotating sequence data with Artemis
-
Berriman M, Rutherford K: Viewing and annotating sequence data with Artemis. Brief Bioinform 2003, 4:124-132.
-
(2003)
Brief Bioinform
, vol.4
, pp. 124-132
-
-
Berriman, M.1
Rutherford, K.2
-
36
-
-
24044433279
-
ACT: The Artemis Comparison Tool
-
Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J: ACT: the Artemis Comparison Tool. Bioinformatics 2005, 21:3422-3423.
-
(2005)
Bioinformatics
, vol.21
, pp. 3422-3423
-
-
Carver, T.J.1
Rutherford, K.M.2
Berriman, M.3
Rajandream, M.A.4
Barrell, B.G.5
Parkhill, J.6
-
37
-
-
0032964297
-
Blast 2 sequences - A new tool for comparing protein and nucleotide sequences
-
Tatusova TA, Madden TL: Blast 2 sequences - a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 1999, 174:247-250.
-
(1999)
FEMS Microbiol Lett
, vol.174
, pp. 247-250
-
-
Tatusova, T.A.1
Madden, T.L.2
-
38
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M: Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
39
-
-
0346494971
-
The tmRNA website: Reductive evolution of tm RNA in plastids and other endosymbionts
-
Gueneau de Novoa P, Williams KP: The tmRNA website: reductive evolution of tm RNA in plastids and other endosymbionts. Nucleic Acids Res 2004, 32:D104-D108.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Gueneau de Novoa, P.1
Williams, K.P.2
|