-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29. (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
DOI 10.1006/jmbi.2001.4513
-
Todd AE, Orengo CA, Thornton JM (2001) Evolution of function in protein superfamilies, from a structural perspective. J Mol Biol 307: 1113-1143. (Pubitemid 33029957)
-
(2001)
Journal of Molecular Biology
, vol.307
, Issue.4
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
4
-
-
43949138227
-
Blast2GO: A comprehensive suite for functional analysis in plant genomics
-
Conesa A, Gotz S (2008) Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics 2008: 619832.
-
(2008)
Int J Plant Genomics
, vol.2008
, pp. 619832
-
-
Conesa, A.1
Gotz, S.2
-
5
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
DOI 10.1093/bioinformatics/bti610
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676. (Pubitemid 41264107)
-
(2005)
Bioinformatics
, vol.21
, Issue.18
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
6
-
-
84874663959
-
A large-scale evaluation of computational protein function prediction
-
Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, et al. (2013) A large-scale evaluation of computational protein function prediction. Nat Methods 10: 221-227.
-
(2013)
Nat Methods
, vol.10
, pp. 221-227
-
-
Radivojac, P.1
Clark, W.T.2
Oron, T.R.3
Schnoes, A.M.4
Wittkop, T.5
-
7
-
-
19544388127
-
PSLpred: Prediction of subcellular localization of bacterial proteins
-
DOI 10.1093/bioinformatics/bti309
-
Bhasin M, Garg A, Raghava GP (2005) PSLpred: prediction of subcellular localization of bacterial proteins. Bioinformatics 21: 2522-2524. (Pubitemid 40731613)
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2522-2524
-
-
Bhasin, M.1
Garg, A.2
Raghava, G.P.S.3
-
8
-
-
70349728612
-
MultiLoc2: Integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
-
Blum T, Briesemeister S, Kohlbacher O (2009) MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction. BMC Bioinformatics 10: 274.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 274
-
-
Blum, T.1
Briesemeister, S.2
Kohlbacher, O.3
-
9
-
-
84859263222
-
WegoLoc: Accurate prediction of protein subcellular localization using weighted Gene Ontology terms
-
Chi SM, Nam D (2012) WegoLoc: accurate prediction of protein subcellular localization using weighted Gene Ontology terms. Bioinformatics 28: 1028-1030.
-
(2012)
Bioinformatics
, vol.28
, pp. 1028-1030
-
-
Chi, S.M.1
Nam, D.2
-
10
-
-
3142779931
-
Prediction of protein subcellular locations by GO-FunD-PseAA predictor
-
Chou KC, Cai YD (2004) Prediction of protein subcellular locations by GO-FunD-PseAA predictor. Biochem Biophys Res Commun 320: 1236-1239.
-
(2004)
Biochem Biophys Res Commun
, vol.320
, pp. 1236-1239
-
-
Chou, K.C.1
Cai, Y.D.2
-
11
-
-
58149307468
-
ESLpred2: Improved method for predicting subcellular localization of eukaryotic proteins
-
Garg A, Raghava GP (2008) ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins. BMC Bioinformatics 9: 503.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 503
-
-
Garg, A.1
Raghava, G.P.2
-
12
-
-
40249110012
-
ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
-
Huang WL, Tung CW, Ho SW, Hwang SF, Ho SY (2008) ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization. BMC Bioinformatics 9: 80.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 80
-
-
Huang, W.L.1
Tung, C.W.2
Ho, S.W.3
Hwang, S.F.4
Ho, S.Y.5
-
13
-
-
79954434760
-
PROlocalizer: Integrated web service for protein subcellular localization prediction
-
Laurila K, Vihinen M (2011) PROlocalizer: integrated web service for protein subcellular localization prediction. Amino Acids 40: 975-980.
-
(2011)
Amino Acids
, vol.40
, pp. 975-980
-
-
Laurila, K.1
Vihinen, M.2
-
14
-
-
56649094590
-
Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species
-
Lee K, Chuang HY, Beyer A, Sung MK, Huh WK, et al. (2008) Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species. Nucleic Acids Res 36: e136.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Lee, K.1
Chuang, H.Y.2
Beyer, A.3
Sung, M.K.4
Huh, W.K.5
-
15
-
-
79951540724
-
Gene ontology based transfer learning for protein subcellular localization
-
Mei S, Fei W, Zhou S (2011) Gene ontology based transfer learning for protein subcellular localization. BMC Bioinformatics 12: 44.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 44
-
-
Mei, S.1
Fei, W.2
Zhou, S.3
-
16
-
-
80053937952
-
SCLpred: Protein subcellular localization prediction by N-to-1 neural networks
-
Mooney C, Wang YH, Pollastri G (2011) SCLpred: protein subcellular localization prediction by N-to-1 neural networks. Bioinformatics 27: 2812-2819.
-
(2011)
Bioinformatics
, vol.27
, pp. 2812-2819
-
-
Mooney, C.1
Wang, Y.H.2
Pollastri, G.3
-
17
-
-
0036891705
-
Sequence conserved for subcellular localization
-
DOI 10.1110/ps.0207402
-
Nair R, Rost B (2002) Sequence conserved for subcellular localization. Protein Sci 11: 2836-2847. (Pubitemid 35365250)
-
(2002)
Protein Science
, vol.11
, Issue.12
, pp. 2836-2847
-
-
Nair, R.1
Rost, B.2
-
18
-
-
0042121304
-
LOC3D: Annotate sub-cellular localization for protein structures
-
DOI 10.1093/nar/gkg514
-
Nair R, Rost B (2003) LOC3D: annotate sub-cellular localization for protein structures. Nucleic Acids Res 31: 3337-3340. (Pubitemid 37442153)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3337-3340
-
-
Nair, R.1
Rost, B.2
-
19
-
-
67650351540
-
Construction of functional interaction networks through consensus localization predictions of the human proteome
-
Park S, Yang JS, Jang SK, Kim S (2009) Construction of functional interaction networks through consensus localization predictions of the human proteome. J Proteome Res 8: 3367-3376.
-
(2009)
J Proteome Res
, vol.8
, pp. 3367-3376
-
-
Park, S.1
Yang, J.S.2
Jang, S.K.3
Kim, S.4
-
20
-
-
84868295522
-
mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines
-
Wan S, Mak MW, Kung SY (2012) mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines. BMC Bioinformatics 13: 290.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 290
-
-
Wan, S.1
Mak, M.W.2
Kung, S.Y.3
-
21
-
-
84898638339
-
HybridGO-Loc: Mining hybrid features on gene ontology for predicting subcellular localization of multi-location proteins
-
Wan S, Mak MW, Kung SY (2014) HybridGO-Loc: mining hybrid features on gene ontology for predicting subcellular localization of multi-location proteins. PLoS One 9: e89545.
-
(2014)
PLoS One
, vol.9
-
-
Wan, S.1
Mak, M.W.2
Kung, S.Y.3
-
22
-
-
33746218840
-
Prediction of protein subcellular localization
-
DOI 10.1002/prot.21018
-
Yu CS, Chen YC, Lu CH, Hwang JK (2006) Prediction of protein subcellular localization. Proteins 64: 643-651. (Pubitemid 44100730)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.64
, Issue.3
, pp. 643-651
-
-
Yu, C.-S.1
Chen, Y.-C.2
Lu, C.-H.3
Hwang, J.-K.4
-
23
-
-
77954199597
-
PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
-
Yu NY, Wagner JR, Laird MR, Melli G, Rey S, et al. (2010) PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 26: 1608-1615.
-
(2010)
Bioinformatics
, vol.26
, pp. 1608-1615
-
-
Yu, N.Y.1
Wagner, J.R.2
Laird, M.R.3
Melli, G.4
Rey, S.5
-
24
-
-
0000515372
-
InterPro: An integrated documentation resource for protein families, domains and functional sites
-
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. (2002) InterPro: an integrated documentation resource for protein families, domains and functional sites. Brief Bioinform 3: 225-235.
-
(2002)
Brief Bioinform
, vol.3
, pp. 225-235
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
-
25
-
-
1942505330
-
Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions
-
Yu CS, Lin CJ, Hwang JK (2004) Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions. Protein Sci 13: 1402-1406.
-
(2004)
Protein Sci
, vol.13
, pp. 1402-1406
-
-
Yu, C.S.1
Lin, C.J.2
Hwang, J.K.3
-
26
-
-
84865304759
-
ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea
-
Paramasivam N, Linke D (2011) ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea. Front Microbiol 2: 218.
-
(2011)
Front Microbiol
, vol.2
, pp. 218
-
-
Paramasivam, N.1
Linke, D.2
-
27
-
-
84866150884
-
Predicted protein subcellular localization in dominant surface ocean bacterioplankton
-
Luo H (2012) Predicted protein subcellular localization in dominant surface ocean bacterioplankton. Appl Environ Microbiol 78: 6550-6557.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 6550-6557
-
-
Luo, H.1
-
28
-
-
75849143326
-
Subcellular localization of marine bacterial alkaline phosphatases
-
Luo H, Benner R, Long RA, Hu J (2009) Subcellular localization of marine bacterial alkaline phosphatases. Proc Natl Acad Sci U S A 106: 21219-21223.
-
(2009)
Proc Natl Acad Sci U S a
, vol.106
, pp. 21219-21223
-
-
Luo, H.1
Benner, R.2
Long, R.A.3
Hu, J.4
-
29
-
-
75849153303
-
The Universal Protein Resource (UniProt) in 2010
-
UniProt C
-
UniProt C (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res 38: D142-148.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
-
30
-
-
0346801873
-
The Gene Oncology (GO) database and informatics resource
-
Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 32: D258-261. (Pubitemid 38081651)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
Richter, J.11
Rubin, G.M.12
Blake, J.A.13
Bult, C.14
Dolan, M.15
Drabkin, H.16
Eppig, J.T.17
Hill, D.P.18
Ni, L.19
Ringwald, M.20
Balakrishnan, R.21
Cherry, J.M.22
Christie, K.R.23
Costanzo, M.C.24
Dwight, S.S.25
Engel, S.26
Fisk, D.G.27
Hirschman, J.E.28
Hong, E.L.29
Nash, R.S.30
Sethuraman, A.31
Theesfeld, C.L.32
Botstein, D.33
Dolinski, K.34
Feierbach, B.35
Berardini, T.36
Mundodi, S.37
Rhee, S.Y.38
Apweiler, R.39
Barrell, D.40
Camon, E.41
Dimmer, E.42
Lee, V.43
Chisholm, R.44
Gaudet, P.45
Kibbe, W.46
Kishore, R.47
Schwarz, E.M.48
Sternberg, P.49
Gwinn, M.50
Hannick, L.51
Wortman, J.52
Berriman, M.53
Wood, V.54
De La, C.N.55
Tonellato, P.56
Jaiswal, P.57
Seigfried, T.58
White, R.59
more..
-
31
-
-
78651267246
-
Pseudomonas Genome Database: Improved comparative analysis and population genomics capability for Pseudomonas genomes
-
Winsor GL, Lam DK, Fleming L, Lo R, Whiteside MD, et al. (2011) Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Res 39: D596-600.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Winsor, G.L.1
Lam, D.K.2
Fleming, L.3
Lo, R.4
Whiteside, M.D.5
-
32
-
-
0033048066
-
Moonlighting proteins
-
Jeffery CJ (1999) Moonlighting proteins. Trends Biochem Sci 24: 8-11.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 8-11
-
-
Jeffery, C.J.1
-
33
-
-
84895871690
-
Comparative genomics study for identification of drug and vaccine targets in Vibrio cholerae: MurA ligase as a case study
-
Chawley P, Samal HB, Prava J, Suar M, Mahapatra RK (2014) Comparative genomics study for identification of drug and vaccine targets in Vibrio cholerae: MurA ligase as a case study. Genomics 103: 83-93.
-
(2014)
Genomics
, vol.103
, pp. 83-93
-
-
Chawley, P.1
Samal, H.B.2
Prava, J.3
Suar, M.4
Mahapatra, R.K.5
|