메뉴 건너뛰기




Volumn 31, Issue 13, 2003, Pages 3337-3340

LOC3D: Annotate sub-cellular localization for protein structures

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEAR PROTEIN; PROTEIN;

EID: 0042121304     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg514     Document Type: Article
Times cited : (36)

References (30)
  • 1
    • 0343938895 scopus 로고    scopus 로고
    • Bridging the gap between sequence and function
    • Koonin,E.V. (2000) Bridging the gap between sequence and function. Trends Genet., 16, 16.
    • (2000) Trends Genet. , vol.16 , pp. 16
    • Koonin, E.V.1
  • 2
    • 0029902780 scopus 로고    scopus 로고
    • Bridging the protein sequence-structure gap by structure predictions
    • Rost,B. and Sander,C. (1996) Bridging the protein sequence-structure gap by structure predictions. Ann. Rev. Biophys. Biomol. Struct., 25, 113-136.
    • (1996) Ann. Rev. Biophys. Biomol. Struct. , vol.25 , pp. 113-136
    • Rost, B.1    Sander, C.2
  • 5
    • 0033909566 scopus 로고    scopus 로고
    • Protein sorting signals and prediction of subcellular localization
    • Nakai,K. (2000) Protein sorting signals and prediction of subcellular localization. Adv. Protein Chem., 54, 277-344.
    • (2000) Adv. Protein Chem. , vol.54 , pp. 277-344
    • Nakai, K.1
  • 8
    • 0032919370 scopus 로고    scopus 로고
    • SMART: Identification and annotation of domains from signalling and extracellular protein sequences
    • Ponting,C.P., Schultz,J., Milpetz,F. and Bork,P. (1999) SMART: identification and annotation of domains from signalling and extracellular protein sequences. Nucleic Acids Res., 27, 229-232.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 229-232
    • Ponting, C.P.1    Schultz, J.2    Milpetz, F.3    Bork, P.4
  • 9
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer,E.L., Eddy,S.R. and Durbin,R. (1997) Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins, 28, 405-420.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.L.1    Eddy, S.R.2    Durbin, R.3
  • 13
    • 0026639919 scopus 로고
    • The T-DNA-linked VirD2 protein contains two distinct functional nuclear localization signals
    • Tinland,B., Koukolikova-Nicola,Z., Hall,M.N. and Hohn,B. (1992) The T-DNA-linked VirD2 protein contains two distinct functional nuclear localization signals. Proc. Natl Acad. Sci. USA, 89, 7442-7446.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 7442-7446
    • Tinland, B.1    Koukolikova-Nicola, Z.2    Hall, M.N.3    Hohn, B.4
  • 14
    • 0034331073 scopus 로고    scopus 로고
    • Finding nuclear localisation signals
    • Cokol,M., Nair,R. and Rost,B. (2000) Finding nuclear localisation signals. EMBO Reports, 1, 411-415.
    • (2000) EMBO Reports , vol.1 , pp. 411-415
    • Cokol, M.1    Nair, R.2    Rost, B.3
  • 15
    • 0037249644 scopus 로고    scopus 로고
    • NLSdb: Database of nuclear localization signals
    • Nair,R., Carter,P. and Rost,B. (2003) NLSdb: database of nuclear localization signals. Nucleic Acids Res., 31, 397-399.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 397-399
    • Nair, R.1    Carter, P.2    Rost, B.3
  • 16
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 17
    • 0344480548 scopus 로고    scopus 로고
    • Inferring sub-cellular localization through automated lexical analysis
    • Nair,R. and Rost,B. (2002) Inferring sub-cellular localization through automated lexical analysis. Bioinformatics, 18 (Suppl. 1), S78-S86.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Nair, R.1    Rost, B.2
  • 20
    • 0036891705 scopus 로고    scopus 로고
    • Sequence conserved for subcellular localization
    • Nair,R. and Rost,B. (2002) Sequence conserved for subcellular localization. Protein Sci., 11, 2836-2847.
    • (2002) Protein Sci. , vol.11 , pp. 2836-2847
    • Nair, R.1    Rost, B.2
  • 21
    • 0031887946 scopus 로고    scopus 로고
    • Wanted: Subcellular localization of proteins based on sequence
    • Eisenhaber,F. and Bork,P. (1998) Wanted: subcellular localization of proteins based on sequence. Trends Cell Biol., 8, 169-170.
    • (1998) Trends Cell Biol. , vol.8 , pp. 169-170
    • Eisenhaber, F.1    Bork, P.2
  • 24
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and the structural meaning of sequence alignment
    • Sander,C. and Schneider,R. (1991) Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins, 9, 56-68.
    • (1991) Proteins , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 25
    • 0032962457 scopus 로고    scopus 로고
    • Twilight zone of protein sequence alignments
    • Rost,B. (1999) Twilight zone of protein sequence alignments. Protein Eng., 12, 85-94.
    • (1999) Protein Eng. , vol.12 , pp. 85-94
    • Rost, B.1
  • 26
    • 0026030641 scopus 로고
    • Database of homology-derived structures and the structural meaning of sequence alignment
    • Sander,C. and Schneider,R. (1991) Database of homology-derived structures and the structural meaning of sequence alignment. Proteins, 9, 56-68.
    • (1991) Proteins , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 27
    • 0004207406 scopus 로고
    • O'Reilly and Associates, Inc., Sebastopol, CA
    • Wall,L. and Schwartz,R.L. (1990) Programming Perl. O'Reilly and Associates, Inc., Sebastopol, CA.
    • (1990) Programming Perl
    • Wall, L.1    Schwartz, R.L.2
  • 29
    • 0035236371 scopus 로고    scopus 로고
    • Using Perl to facilitate biological analysis
    • Stein,L.D. (2001) Using Perl to facilitate biological analysis. Methods Biochem. Anal., 43, 413-449.
    • (2001) Methods Biochem. Anal. , vol.43 , pp. 413-449
    • Stein, L.D.1
  • 30
    • 0037250635 scopus 로고    scopus 로고
    • PEP: Predictions for entire proteomes
    • Carter,P., Liu,J. and Rost,B. (2003) PEP: predictions for entire proteomes. Nucleic Acids Res., 31, 410-413.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 410-413
    • Carter, P.1    Liu, J.2    Rost, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.