메뉴 건너뛰기




Volumn 135, Issue 5, 2014, Pages 1110-1118

Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling

(38)  Nones, Katia a   Waddell, Nic a   Song, Sarah a   Patch, Ann Marie a   Miller, David a   Johns, Amber b   Wu, Jianmin b   Kassahn, Karin S a   Wood, David a   Bailey, Peter a   Fink, Lynn a   Manning, Suzanne a   Christ, Angelika N a   Nourse, Craig a   Kazakoff, Stephen a   Taylor, Darrin a   Leonard, Conrad a   Chang, David K b,c,d,e   Jones, Marc D b   Thomas, Michelle b   more..


Author keywords

axon guidance; methylation; pancreatic cancer; SLIT ROBO pathway; stellate cell activation

Indexed keywords

MESSENGER RNA;

EID: 84902438252     PISSN: 00207136     EISSN: 10970215     Source Type: Journal    
DOI: 10.1002/ijc.28765     Document Type: Article
Times cited : (179)

References (45)
  • 2
    • 79951691421 scopus 로고    scopus 로고
    • Genetic and epigenetic alterations in pancreatic carcinogenesis
    • Delpu Y, Hanoun N, Lulka H, et al. Genetic and epigenetic alterations in pancreatic carcinogenesis. Curr Genomics 2011; 12: 15-24.
    • (2011) Curr Genomics , vol.12 , pp. 15-24
    • Delpu, Y.1    Hanoun, N.2    Lulka, H.3
  • 3
    • 0038576158 scopus 로고    scopus 로고
    • The power and the promise of DNA methylation markers
    • Laird PW,. The power and the promise of DNA methylation markers. Nat Rev Cancer 2003; 3: 253-66.
    • (2003) Nat Rev Cancer , vol.3 , pp. 253-266
    • Laird, P.W.1
  • 5
    • 79960927422 scopus 로고    scopus 로고
    • Increased methylation variation in epigenetic domains across cancer types
    • Hansen KD, Timp W, Bravo HC, et al. Increased methylation variation in epigenetic domains across cancer types. Nat Genet 2011; 43: 768-75.
    • (2011) Nat Genet , vol.43 , pp. 768-775
    • Hansen, K.D.1    Timp, W.2    Bravo, H.C.3
  • 6
    • 59149084538 scopus 로고    scopus 로고
    • The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
    • Irizarry RA, Ladd-Acosta C, Wen B, et al. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet 2009; 41: 178-86.
    • (2009) Nat Genet , vol.41 , pp. 178-186
    • Irizarry, R.A.1    Ladd-Acosta, C.2    Wen, B.3
  • 7
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones PA, Baylin SB,. The fundamental role of epigenetic events in cancer. Nat Rev Genet 2002; 3: 415-28.
    • (2002) Nat Rev Genet , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 8
    • 52149123619 scopus 로고    scopus 로고
    • Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
    • Jones S, Zhang X, Parsons DW, et al. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 2008; 321: 1801-6.
    • (2008) Science , vol.321 , pp. 1801-1806
    • Jones, S.1    Zhang, X.2    Parsons, D.W.3
  • 9
    • 84863011464 scopus 로고    scopus 로고
    • Whole-exome sequencing of human pancreatic cancers and characterization of genomic instability caused by MLH1 haploinsufficiency and complete deficiency
    • Wang L, Tsutsumi S, Kawaguchi T, et al. Whole-exome sequencing of human pancreatic cancers and characterization of genomic instability caused by MLH1 haploinsufficiency and complete deficiency. Genome Res 2012; 22: 208-19.
    • (2012) Genome Res , vol.22 , pp. 208-219
    • Wang, L.1    Tsutsumi, S.2    Kawaguchi, T.3
  • 10
    • 84869091997 scopus 로고    scopus 로고
    • Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes
    • Biankin AV, Waddell N, Kassahn KS, et al. Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature 2012; 491: 399-405.
    • (2012) Nature , vol.491 , pp. 399-405
    • Biankin, A.V.1    Waddell, N.2    Kassahn, K.S.3
  • 11
    • 0037742210 scopus 로고    scopus 로고
    • Discovery of novel targets for aberrant methylation in pancreatic carcinoma using high-throughput microarrays
    • Sato N, Fukushima N, Maitra A, et al. Discovery of novel targets for aberrant methylation in pancreatic carcinoma using high-throughput microarrays. Cancer Res 2003; 63: 3735-42.
    • (2003) Cancer Res , vol.63 , pp. 3735-3742
    • Sato, N.1    Fukushima, N.2    Maitra, A.3
  • 12
    • 70350574158 scopus 로고    scopus 로고
    • Characterizing DNA methylation patterns in pancreatic cancer genome
    • Tan AC, Jimeno A, Lin SH, et al. Characterizing DNA methylation patterns in pancreatic cancer genome. Mol Oncol 2009; 3: 425-38.
    • (2009) Mol Oncol , vol.3 , pp. 425-438
    • Tan, A.C.1    Jimeno, A.2    Lin, S.H.3
  • 13
    • 79960309513 scopus 로고    scopus 로고
    • Genome-wide analysis of promoter methylation associated with gene expression profile in pancreatic adenocarcinoma
    • Vincent A, Omura N, Hong SM, et al. Genome-wide analysis of promoter methylation associated with gene expression profile in pancreatic adenocarcinoma. Clin Cancer Res 2011; 17: 4341-54.
    • (2011) Clin Cancer Res , vol.17 , pp. 4341-4354
    • Vincent, A.1    Omura, N.2    Hong, S.M.3
  • 14
    • 84866700697 scopus 로고    scopus 로고
    • Qpure: A tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles
    • Song S, Nones K, Miller D, et al. qpure: A tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles. PLoS One 2012; 7: e45835.
    • (2012) PLoS One , vol.7
    • Song, S.1    Nones, K.2    Miller, D.3
  • 15
    • 84862173149 scopus 로고    scopus 로고
    • SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips
    • Maksimovic J, Gordon L, Oshlack A,. SWAN: subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips. Genome Biol 2012; 13: R44.
    • (2012) Genome Biol , vol.13
    • Maksimovic, J.1    Gordon, L.2    Oshlack, A.3
  • 16
    • 70350694448 scopus 로고    scopus 로고
    • IntegrOmics: An R package to unravel relationships between two omics datasets
    • Le Cao KA, Gonzalez I, Dejean S,. integrOmics: an R package to unravel relationships between two omics datasets. Bioinformatics 2009; 25: 2855-6.
    • (2009) Bioinformatics , vol.25 , pp. 2855-2856
    • Le Cao, K.A.1    Gonzalez, I.2    Dejean, S.3
  • 17
    • 52949118548 scopus 로고    scopus 로고
    • Model-based clustering of DNA methylation array data: A recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions
    • Houseman EA, Christensen BC, Yeh RF, et al. Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions. BMC Bioinformatics 2008; 9: 365.
    • (2008) BMC Bioinformatics , vol.9 , pp. 365
    • Houseman, E.A.1    Christensen, B.C.2    Yeh, R.F.3
  • 18
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: Designing primers for methylation PCRs
    • Li LC, Dahiya R,. MethPrimer: designing primers for methylation PCRs. Bioinformatics 2002; 18: 1427-31.
    • (2002) Bioinformatics , vol.18 , pp. 1427-1431
    • Li, L.C.1    Dahiya, R.2
  • 19
    • 46249088370 scopus 로고    scopus 로고
    • Lumi: A pipeline for processing Illumina microarray
    • Du P, Kibbe WA, Lin SM,. lumi: a pipeline for processing Illumina microarray. Bioinformatics 2008; 24: 1547-8.
    • (2008) Bioinformatics , vol.24 , pp. 1547-1548
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 20
    • 45449097447 scopus 로고    scopus 로고
    • Fdrtool: A versatile R package for estimating local and tail area-based false discovery rates
    • Strimmer K,. fdrtool: a versatile R package for estimating local and tail area-based false discovery rates. Bioinformatics 2008; 24: 1461-2.
    • (2008) Bioinformatics , vol.24 , pp. 1461-1462
    • Strimmer, K.1
  • 21
    • 79251567720 scopus 로고    scopus 로고
    • DNA methylation of the first exon is tightly linked to transcriptional silencing
    • Brenet F, Moh M, Funk P, et al. DNA methylation of the first exon is tightly linked to transcriptional silencing. PLoS One 2011; 6: e14524.
    • (2011) PLoS One , vol.6
    • Brenet, F.1    Moh, M.2    Funk, P.3
  • 22
    • 84856549042 scopus 로고    scopus 로고
    • Genome-scale analysis of aberrant DNA methylation in colorectal cancer
    • Hinoue T, Weisenberger DJ, Lange CP, et al. Genome-scale analysis of aberrant DNA methylation in colorectal cancer. Genome Res 2012; 22: 271-82.
    • (2012) Genome Res , vol.22 , pp. 271-282
    • Hinoue, T.1    Weisenberger, D.J.2    Lange, C.P.3
  • 23
    • 84867820420 scopus 로고    scopus 로고
    • Methylation subtypes and large-scale epigenetic alterations in gastric cancer
    • Zouridis H, Deng N, Ivanova T, et al. Methylation subtypes and large-scale epigenetic alterations in gastric cancer. Sci Transl Med 2012; 4: 156ra40.
    • (2012) Sci Transl Med , vol.4
    • Zouridis, H.1    Deng, N.2    Ivanova, T.3
  • 24
    • 84866445523 scopus 로고    scopus 로고
    • Pancreatic stellate cells: A starring role in normal and diseased pancreas
    • Apte MV, Pirola RC, Wilson JS,. Pancreatic stellate cells: a starring role in normal and diseased pancreas. Front Physiol 2012; 3: 344.
    • (2012) Front Physiol , vol.3 , pp. 344
    • Apte, M.V.1    Pirola, R.C.2    Wilson, J.S.3
  • 25
    • 79955828776 scopus 로고    scopus 로고
    • Stromal biology and therapy in pancreatic cancer
    • Neesse A, Michl P, Frese KK, et al. Stromal biology and therapy in pancreatic cancer. Gut 2011; 60: 861-8.
    • (2011) Gut , vol.60 , pp. 861-868
    • Neesse, A.1    Michl, P.2    Frese, K.K.3
  • 26
    • 33751505540 scopus 로고    scopus 로고
    • DNA methylation profiling of human chromosomes 6, 20 and 22
    • Eckhardt F, Lewin J, Cortese R, et al. DNA methylation profiling of human chromosomes 6, 20 and 22. Nat Genet 2006; 38: 1378-85.
    • (2006) Nat Genet , vol.38 , pp. 1378-1385
    • Eckhardt, F.1    Lewin, J.2    Cortese, R.3
  • 27
    • 79952384705 scopus 로고    scopus 로고
    • Cancer epigenetics reaches mainstream oncology
    • Rodriguez-Paredes M, Esteller M,. Cancer epigenetics reaches mainstream oncology. Nat Med 2011; 17: 330-9.
    • (2011) Nat Med , vol.17 , pp. 330-339
    • Rodriguez-Paredes, M.1    Esteller, M.2
  • 28
    • 77954504873 scopus 로고    scopus 로고
    • Conserved role of intragenic DNA methylation in regulating alternative promoters
    • Maunakea AK, Nagarajan RP, Bilenky M, et al. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature 2010; 466: 253-7.
    • (2010) Nature , vol.466 , pp. 253-257
    • Maunakea, A.K.1    Nagarajan, R.P.2    Bilenky, M.3
  • 29
    • 13644267274 scopus 로고    scopus 로고
    • Molecular regulation of pancreatic stellate cell function
    • Jaster R,. Molecular regulation of pancreatic stellate cell function. Mol Cancer 2004; 3: 26.
    • (2004) Mol Cancer , vol.3 , pp. 26
    • Jaster, R.1
  • 30
    • 84864832834 scopus 로고    scopus 로고
    • The role of stroma in pancreatic cancer: Diagnostic and therapeutic implications
    • Erkan M, Hausmann S, Michalski CW, et al. The role of stroma in pancreatic cancer: diagnostic and therapeutic implications. Nat Rev Gastroenterol Hepatol 2012; 9: 454-67.
    • (2012) Nat Rev Gastroenterol Hepatol , vol.9 , pp. 454-467
    • Erkan, M.1    Hausmann, S.2    Michalski, C.W.3
  • 31
    • 78650175637 scopus 로고    scopus 로고
    • Pancreatic stellate cells promote epithelial-mesenchymal transition in pancreatic cancer cells
    • Kikuta K, Masamune A, Watanabe T, et al. Pancreatic stellate cells promote epithelial-mesenchymal transition in pancreatic cancer cells. Biochem Biophys Res Commun 2010; 403: 380-4.
    • (2010) Biochem Biophys Res Commun , vol.403 , pp. 380-384
    • Kikuta, K.1    Masamune, A.2    Watanabe, T.3
  • 32
    • 80053566650 scopus 로고    scopus 로고
    • Navigating breast cancer: Axon guidance molecules as breast cancer tumor suppressors and oncogenes
    • Harburg GC, Hinck L,. Navigating breast cancer: axon guidance molecules as breast cancer tumor suppressors and oncogenes. J Mammary Gland Biol Neoplasia 2011; 16: 257-70.
    • (2011) J Mammary Gland Biol Neoplasia , vol.16 , pp. 257-270
    • Harburg, G.C.1    Hinck, L.2
  • 33
    • 79952027445 scopus 로고    scopus 로고
    • Novel roles for Slits and netrins: Axon guidance cues as anticancer targets?
    • Mehlen P, Delloye-Bourgeois C, Chedotal A,. Novel roles for Slits and netrins: axon guidance cues as anticancer targets? Nat Rev Cancer 2011; 11: 188-97.
    • (2011) Nat Rev Cancer , vol.11 , pp. 188-197
    • Mehlen, P.1    Delloye-Bourgeois, C.2    Chedotal, A.3
  • 34
    • 85047696015 scopus 로고    scopus 로고
    • Tumour specific promoter region methylation of the human homologue of the Drosophila Roundabout gene DUTT1 (ROBO1) in human cancers
    • Dallol A, Forgacs E, Martinez A, et al. Tumour specific promoter region methylation of the human homologue of the Drosophila Roundabout gene DUTT1 (ROBO1) in human cancers. Oncogene 2002; 21: 3020-8.
    • (2002) Oncogene , vol.21 , pp. 3020-3028
    • Dallol, A.1    Forgacs, E.2    Martinez, A.3
  • 35
    • 33745493625 scopus 로고    scopus 로고
    • Promoter hypermethylation-mediated inactivation of multiple Slit-Robo pathway genes in cervical cancer progression
    • Narayan G, Goparaju C, Arias-Pulido H, et al. Promoter hypermethylation-mediated inactivation of multiple Slit-Robo pathway genes in cervical cancer progression. Mol Cancer 2006; 5: 16.
    • (2006) Mol Cancer , vol.5 , pp. 16
    • Narayan, G.1    Goparaju, C.2    Arias-Pulido, H.3
  • 36
    • 61949430511 scopus 로고    scopus 로고
    • The Slit/Robo system suppresses hepatocyte growth factor-dependent invasion and morphogenesis
    • Stella MC, Trusolino L, Comoglio PM,. The Slit/Robo system suppresses hepatocyte growth factor-dependent invasion and morphogenesis. Mol Biol Cell 2009; 20: 642-57.
    • (2009) Mol Biol Cell , vol.20 , pp. 642-657
    • Stella, M.C.1    Trusolino, L.2    Comoglio, P.M.3
  • 37
    • 55549115695 scopus 로고    scopus 로고
    • Slit-2 induces a tumor-suppressive effect by regulating beta-catenin in breast cancer cells
    • Prasad A, Paruchuri V, Preet A, et al. Slit-2 induces a tumor-suppressive effect by regulating beta-catenin in breast cancer cells. J Biol Chem 2008; 283: 26624-33.
    • (2008) J Biol Chem , vol.283 , pp. 26624-26633
    • Prasad, A.1    Paruchuri, V.2    Preet, A.3
  • 38
    • 33644846509 scopus 로고    scopus 로고
    • Epigenetic gene silencing in cancer - A mechanism for early oncogenic pathway addiction?
    • Baylin SB, Ohm JE,. Epigenetic gene silencing in cancer-a mechanism for early oncogenic pathway addiction? Nat Rev Cancer 2006; 6: 107-16.
    • (2006) Nat Rev Cancer , vol.6 , pp. 107-116
    • Baylin, S.B.1    Ohm, J.E.2
  • 39
    • 44449094545 scopus 로고    scopus 로고
    • Convergence of mutation and epigenetic alterations identifies common genes in cancer that predict for poor prognosis
    • Chan TA, Glockner S, Yi JM, et al. Convergence of mutation and epigenetic alterations identifies common genes in cancer that predict for poor prognosis. PLoS Med 2008; 5: e114.
    • (2008) PLoS Med , vol.5
    • Chan, T.A.1    Glockner, S.2    Yi, J.M.3
  • 40
    • 84861733799 scopus 로고    scopus 로고
    • MET: A promising anticancer therapeutic target
    • Peters S, Adjei AA,. MET: a promising anticancer therapeutic target. Nat Rev Clin Oncol 2012; 9: 314-26.
    • (2012) Nat Rev Clin Oncol , vol.9 , pp. 314-326
    • Peters, S.1    Adjei, A.A.2
  • 41
    • 80855147490 scopus 로고    scopus 로고
    • SPARC promotes cathepsin B-mediated melanoma invasiveness through a collagen I/alpha2beta1 integrin axis
    • Girotti MR, Fernandez M, Lopez JA, et al. SPARC promotes cathepsin B-mediated melanoma invasiveness through a collagen I/alpha2beta1 integrin axis. J Invest Dermatol 2011; 131: 2438-47.
    • (2011) J Invest Dermatol , vol.131 , pp. 2438-2447
    • Girotti, M.R.1    Fernandez, M.2    Lopez, J.A.3
  • 42
    • 23744510853 scopus 로고    scopus 로고
    • Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes
    • Grutzmann R, Boriss H, Ammerpohl O, et al. Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes. Oncogene 2005; 24: 5079-88.
    • (2005) Oncogene , vol.24 , pp. 5079-5088
    • Grutzmann, R.1    Boriss, H.2    Ammerpohl, O.3
  • 43
    • 84879165131 scopus 로고    scopus 로고
    • Expression of ST3GAL4 leads to SLe(x) expression and induces c-Met activation and an invasive phenotype in gastric carcinoma cells
    • Gomes C, Osorio H, Pinto MT, et al. Expression of ST3GAL4 leads to SLe(x) expression and induces c-Met activation and an invasive phenotype in gastric carcinoma cells. PLoS One 2013; 8: e66737.
    • (2013) PLoS One , vol.8
    • Gomes, C.1    Osorio, H.2    Pinto, M.T.3
  • 44
    • 0031844821 scopus 로고    scopus 로고
    • Activation of Rac and Cdc42 by integrins mediates cell spreading
    • Price LS, Leng J, Schwartz MA, et al. Activation of Rac and Cdc42 by integrins mediates cell spreading. Mol Biol Cell 1998; 9: 1863-71.
    • (1998) Mol Biol Cell , vol.9 , pp. 1863-1871
    • Price, L.S.1    Leng, J.2    Schwartz, M.A.3
  • 45
    • 0035943401 scopus 로고    scopus 로고
    • Integrin-mediated activation of Cdc42 controls cell polarity in migrating astrocytes through PKCzeta
    • Etienne-Manneville S, Hall A,. Integrin-mediated activation of Cdc42 controls cell polarity in migrating astrocytes through PKCzeta. Cell 2001; 106: 489-98.
    • (2001) Cell , vol.106 , pp. 489-498
    • Etienne-Manneville, S.1    Hall, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.