454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: Transcriptome assembly and toxicant induced changes

Aquatic Toxicology

Volumn 153, Issue , 2014, Pages 73-88

  Hook, Sharon E ^a   Twine, Natalie A ^b   Simpson, Stuart L ^a   Spadaro, David A ^a   Moncuquet, Philippe ^a   Wilkins, Marc R ^b  

^a CSIRO   (Australia)

^b UNIVERSITY OF NEW SOUTH WALES   (Australia)

Author keywords

Amphipod; De novo assembly; RNA Seq; Toxicogenomics; Transcriptome assembly

Indexed keywords

ABC TRANSPORTER; CADMIUM; CARBOXYPEPTIDASE; CHYMOTRYPSIN; CONTIG; COPPER; DIESEL FUEL; HEAT SHOCK PROTEIN 70; IRON; LEAD; MANGANESE; MESSENGER RNA; NICKEL; ORGANIC CARBON; PETROLEUM DERIVATIVE; POLYCYCLIC AROMATIC HYDROCARBON; RIBOSOME RNA; SEA WATER; TRANSCRIPTOME; ZINC;

AMPHIPOD; ASSAY; GENE EXPRESSION; RNA; TOXICOLOGY;

ADULT; ALGORITHM; AMPHIPODA; ARTICLE; BIOINFORMATICS; COMPARATIVE STUDY; CONTIG MAPPING; CONTROLLED STUDY; DEVELOPMENTAL STAGE; DNA LIBRARY; DOWN REGULATION; ECOTOXICOLOGY; EMBRYO; ENVIRONMENTAL EXPOSURE; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC VARIABILITY; GENOMICS; JUVENILE ANIMAL; MELITA PLUMULOSA; MICROARRAY ANALYSIS; MIRA ALGORITHM; NONHUMAN; PHYSICAL CHEMISTRY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROCESS OPTIMIZATION; PYROSEQUENCING; QUALITY CONTROL; RNA ANALYSIS; RNA SEQUENCE; RNA STABILITY; SEDIMENT; SEQUENCE ALIGNMENT; TRANSCRIPTOMICS; UPREGULATION; VALIDATION PROCESS; WATER POLLUTION;

AMPHIPODA; MELITA;

AMPHIPOD; DE NOVO ASSEMBLY; RNA SEQ; TOXICOGENOMICS; TRANSCRIPTOME ASSEMBLY;

AMPHIPODA; ANIMALS; AUSTRALIA; COMPUTATIONAL BIOLOGY; GASOLINE; GEOLOGIC SEDIMENTS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; METALS; MOLECULAR SEQUENCE ANNOTATION; TRANSCRIPTOME; WATER POLLUTANTS, CHEMICAL;

EID: 84902357061     PISSN: 0166445X     EISSN: 18791514     Source Type: Journal    
DOI: 10.1016/j.aquatox.2013.11.022     Document Type: Article

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