-
2
-
-
79551632781
-
The ecoresponsive genome of Daphnia pulex
-
10.1126/science.1197761, 21292972
-
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, et al. The ecoresponsive genome of Daphnia pulex. Science 2011, 331:555-561. 10.1126/science.1197761, 21292972.
-
(2011)
Science
, vol.331
, pp. 555-561
-
-
Colbourne, J.K.1
Pfrender, M.E.2
Gilbert, D.3
Thomas, W.K.4
Tucker, A.5
Oakley, T.H.6
Tokishita, S.7
Aerts, A.8
Arnold, G.J.9
Basu, M.K.10
-
3
-
-
0347457283
-
Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin
-
10.1016/j.ympev.2003.07.013, 15019618
-
Mallatt JM, Garey JR, Shultz JW. Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin. Mol Phylogenet Evol 2004, 31:178-191. 10.1016/j.ympev.2003.07.013, 15019618.
-
(2004)
Mol Phylogenet Evol
, vol.31
, pp. 178-191
-
-
Mallatt, J.M.1
Garey, J.R.2
Shultz, J.W.3
-
4
-
-
0028976103
-
Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods
-
10.1038/376165a0, 7603566
-
Friedrich M, Tautz D. Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods. Nature 1995, 376:165-167. 10.1038/376165a0, 7603566.
-
(1995)
Nature
, vol.376
, pp. 165-167
-
-
Friedrich, M.1
Tautz, D.2
-
5
-
-
0032537194
-
Gene translocation links insects and crustaceans
-
10.1038/33577, 9565028
-
Boore JL, Lavrov DV, Brown WM. Gene translocation links insects and crustaceans. Nature 1998, 392:667-668. 10.1038/33577, 9565028.
-
(1998)
Nature
, vol.392
, pp. 667-668
-
-
Boore, J.L.1
Lavrov, D.V.2
Brown, W.M.3
-
6
-
-
77649189590
-
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
-
10.1038/nature08742, 20147900
-
Regier JC, Shultz JW, Zwick A, Hussey A, Ball B, Wetzer R, Martin JW, Cunningham CW. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature 2010, 463:1079-1083. 10.1038/nature08742, 20147900.
-
(2010)
Nature
, vol.463
, pp. 1079-1083
-
-
Regier, J.C.1
Shultz, J.W.2
Zwick, A.3
Hussey, A.4
Ball, B.5
Wetzer, R.6
Martin, J.W.7
Cunningham, C.W.8
-
7
-
-
0035855865
-
Arthropod phylogeny based on eight molecular loci and morphology
-
10.1038/35093097, 11557979
-
Giribet G, Edgecombe GD, Wheeler WC. Arthropod phylogeny based on eight molecular loci and morphology. Nature 2001, 413:157-161. 10.1038/35093097, 11557979.
-
(2001)
Nature
, vol.413
, pp. 157-161
-
-
Giribet, G.1
Edgecombe, G.D.2
Wheeler, W.C.3
-
9
-
-
0035855871
-
Mitochondrial protein phylogeny joins myriapods with chelicerates
-
10.1038/35093090, 11557978
-
Hwang UW, Friedrich M, Tautz D, Park CJ, Kim W. Mitochondrial protein phylogeny joins myriapods with chelicerates. Nature 2001, 413:154-157. 10.1038/35093090, 11557978.
-
(2001)
Nature
, vol.413
, pp. 154-157
-
-
Hwang, U.W.1
Friedrich, M.2
Tautz, D.3
Park, C.J.4
Kim, W.5
-
10
-
-
0037020710
-
The phylogenetic significance of crustacean optic neuropils and chiasmata: a re-examination
-
10.1002/cne.10375, 12357428
-
Harzsch S. The phylogenetic significance of crustacean optic neuropils and chiasmata: a re-examination. J Comp Neurol 2002, 453:10-21. 10.1002/cne.10375, 12357428.
-
(2002)
J Comp Neurol
, vol.453
, pp. 10-21
-
-
Harzsch, S.1
-
11
-
-
0041704183
-
Conserved and convergent organization in the optic lobes of insects and isopods, with reference to other crustacean taxa
-
10.1002/cne.10925, 14595766
-
Sinakevitch I, Douglass JK, Scholtz G, Loesel R, Strausfeld NJ. Conserved and convergent organization in the optic lobes of insects and isopods, with reference to other crustacean taxa. J Comp Neurol 2003, 467:150-172. 10.1002/cne.10925, 14595766.
-
(2003)
J Comp Neurol
, vol.467
, pp. 150-172
-
-
Sinakevitch, I.1
Douglass, J.K.2
Scholtz, G.3
Loesel, R.4
Strausfeld, N.J.5
-
12
-
-
0034035067
-
The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods?
-
Wilson K, Cahill V, Ballment E, Benzie J. The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods?. Mol Biol Evol 2000, 17:863-874.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 863-874
-
-
Wilson, K.1
Cahill, V.2
Ballment, E.3
Benzie, J.4
-
13
-
-
57349194728
-
Recent advances in crustacean genomics
-
10.1093/icb/icn096, 21669837
-
Stillman JH, Colbourne JK, Lee CE, Patel NH, Phillips MR, Towle DW, Eads BD, Gelembuik GW, Henry RP, Johnson EA, et al. Recent advances in crustacean genomics. Integr Comp Biol 2008, 48:852-868. 10.1093/icb/icn096, 21669837.
-
(2008)
Integr Comp Biol
, vol.48
, pp. 852-868
-
-
Stillman, J.H.1
Colbourne, J.K.2
Lee, C.E.3
Patel, N.H.4
Phillips, M.R.5
Towle, D.W.6
Eads, B.D.7
Gelembuik, G.W.8
Henry, R.P.9
Johnson, E.A.10
-
14
-
-
84857140022
-
Litopenaeus vannamei Gene Discovery Project
-
City: NCBI, 2008
-
Vega E, O'Leary NA, Robalino J, Peck ME, Bartlett TC, Richards M, Hikima S, Browdy CL, Warr GW, Chapman RW, Gross PS. Litopenaeus vannamei Gene Discovery Project. Book Litopenaeus vannamei Gene Discovery Project 2008, City: NCBI, 2008.
-
(2008)
Book Litopenaeus vannamei Gene Discovery Project
-
-
Vega, E.1
O'Leary, N.A.2
Robalino, J.3
Peck, M.E.4
Bartlett, T.C.5
Richards, M.6
Hikima, S.7
Browdy, C.L.8
Warr, G.W.9
Chapman, R.W.10
Gross, P.S.11
-
15
-
-
84857142439
-
Expressed sequence tags from cadmium-exposed postlarvae stage 42 of cultured, specific pathogen-free Pacific whiteleg shrimp, Litopenaeus vannamei
-
City: NCBI, 2009
-
Alcivar-Warren A, Delaney M, Meehan-Meola D, Alcivar MN, Warren WB. Expressed sequence tags from cadmium-exposed postlarvae stage 42 of cultured, specific pathogen-free Pacific whiteleg shrimp, Litopenaeus vannamei. Book Expressed sequence tags from cadmium-exposed postlarvae stage 42 of cultured, specific pathogen-free Pacific whiteleg shrimp, Litopenaeus vannamei 2009, City: NCBI, 2009.
-
(2009)
Book Expressed sequence tags from cadmium-exposed postlarvae stage 42 of cultured, specific pathogen-free Pacific whiteleg shrimp, Litopenaeus vannamei
-
-
Alcivar-Warren, A.1
Delaney, M.2
Meehan-Meola, D.3
Alcivar, M.N.4
Warren, W.B.5
-
18
-
-
77949504630
-
The porcelain crab transcriptome and PCAD, the porcelain crab microarray and sequence database
-
10.1371/journal.pone.0009327, 2824831, 20174471
-
Tagmount A, Wang M, Lindquist E, Tanaka Y, Teranishi KS, Sunagawa S, Wong M, Stillman JH. The porcelain crab transcriptome and PCAD, the porcelain crab microarray and sequence database. PLoS ONE 2010, 5:e9327. 10.1371/journal.pone.0009327, 2824831, 20174471.
-
(2010)
PLoS ONE
, vol.5
-
-
Tagmount, A.1
Wang, M.2
Lindquist, E.3
Tanaka, Y.4
Teranishi, K.S.5
Sunagawa, S.6
Wong, M.7
Stillman, J.H.8
-
19
-
-
84857137914
-
Expressed Sequence Tags in a normalized cDNA library prepared from multiple tissues of adult intermolt and postmolt American lobster, Homarus americanus
-
City: NCBI, 2007
-
Towle DW, Smith CM, Beale KM. Expressed Sequence Tags in a normalized cDNA library prepared from multiple tissues of adult intermolt and postmolt American lobster, Homarus americanus. Book Expressed Sequence Tags in a normalized cDNA library prepared from multiple tissues of adult intermolt and postmolt American lobster, Homarus americanus 2007, City: NCBI, 2007.
-
(2007)
Book Expressed Sequence Tags in a normalized cDNA library prepared from multiple tissues of adult intermolt and postmolt American lobster, Homarus americanus
-
-
Towle, D.W.1
Smith, C.M.2
Beale, K.M.3
-
20
-
-
84857137915
-
Expressed sequence tags associated with asymptomatic and shell-diseased lobsters
-
City: NCBI, 2009
-
Verslycke T, Tarrant AM, Stegeman JJ, McDowell J. Expressed sequence tags associated with asymptomatic and shell-diseased lobsters. Book Expressed sequence tags associated with asymptomatic and shell-diseased lobsters 2009, City: NCBI, 2009.
-
(2009)
Book Expressed sequence tags associated with asymptomatic and shell-diseased lobsters
-
-
Verslycke, T.1
Tarrant, A.M.2
Stegeman, J.J.3
McDowell, J.4
-
21
-
-
33645834347
-
Gene expression and specificity in the mature zone of the lobster olfactory organ
-
10.1152/physiolgenomics.00276.2005, 16614458
-
Stepanyan R, Day K, Urban J, Hardin DL, Shetty RS, Derby CD, Ache BW, McClintock TS. Gene expression and specificity in the mature zone of the lobster olfactory organ. Physiol Genomics 2006, 25:224-233. 10.1152/physiolgenomics.00276.2005, 16614458.
-
(2006)
Physiol Genomics
, vol.25
, pp. 224-233
-
-
Stepanyan, R.1
Day, K.2
Urban, J.3
Hardin, D.L.4
Shetty, R.S.5
Derby, C.D.6
Ache, B.W.7
McClintock, T.S.8
-
22
-
-
78951476007
-
The maternal and embryonic transcriptome of the milkweed bug Oncopeltus fasciatus
-
10.1186/1471-2164-12-61, 3040728, 21266083
-
Ewen-Campen B, Shaner N, Panfilio KA, Suzuki Y, Roth S, Extavour CG. The maternal and embryonic transcriptome of the milkweed bug Oncopeltus fasciatus. BMC genomics 2011, 12:61. 10.1186/1471-2164-12-61, 3040728, 21266083.
-
(2011)
BMC genomics
, vol.12
, pp. 61
-
-
Ewen-Campen, B.1
Shaner, N.2
Panfilio, K.A.3
Suzuki, Y.4
Roth, S.5
Extavour, C.G.6
-
23
-
-
79251553728
-
Antarctic krill 454 pyrosequencing reveals chaperone and stress transcriptome
-
10.1371/journal.pone.0015919, 3017093, 21253607
-
Clark MS, Thorne MA, Toullec JY, Meng Y, Guan le L, Peck LS, Moore S. Antarctic krill 454 pyrosequencing reveals chaperone and stress transcriptome. PLoS ONE 2011, 6:e15919. 10.1371/journal.pone.0015919, 3017093, 21253607.
-
(2011)
PLoS ONE
, vol.6
-
-
Clark, M.S.1
Thorne, M.A.2
Toullec, J.Y.3
Meng, Y.4
Guan le, L.5
Peck, L.S.6
Moore, S.7
-
25
-
-
77951294433
-
The Crustacean Parhyale hawaiensis, A New Model for Arthropod Development
-
Cold Spring Harbor: CSHL Press
-
Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NH. The Crustacean Parhyale hawaiensis, A New Model for Arthropod Development. Emerging Model Organisms: A Laboratory Manual 2008, 1:373-404. Cold Spring Harbor: CSHL Press.
-
(2008)
Emerging Model Organisms: A Laboratory Manual
, vol.1
, pp. 373-404
-
-
Rehm, E.J.1
Hannibal, R.L.2
Chaw, R.C.3
Vargas-Vila, M.A.4
Patel, N.H.5
-
26
-
-
0036922905
-
Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates
-
10.1242/dev.00155, 12421717
-
Gerberding M, Browne WE, Patel NH. Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates. Development 2002, 129:5789-5801. 10.1242/dev.00155, 12421717.
-
(2002)
Development
, vol.129
, pp. 5789-5801
-
-
Gerberding, M.1
Browne, W.E.2
Patel, N.H.3
-
27
-
-
80053606307
-
Patterns of cell lineage, movement, and migration from germ layer specification to gastrulation in the amphipod crustacean Parhyale hawaiensis
-
Alwes F, Hinchen B, Extavour CG. Patterns of cell lineage, movement, and migration from germ layer specification to gastrulation in the amphipod crustacean Parhyale hawaiensis. Dev Biol 2011,
-
(2011)
Dev Biol
-
-
Alwes, F.1
Hinchen, B.2
Extavour, C.G.3
-
28
-
-
77951209575
-
Mesoderm and ectoderm lineages in the crustacean Parhyale hawaiensis display intra-germ layer compensation
-
10.1016/j.ydbio.2009.12.006, 20005872
-
Price AL, Modrell MS, Hannibal RL, Patel NH. Mesoderm and ectoderm lineages in the crustacean Parhyale hawaiensis display intra-germ layer compensation. Dev Biol 2010, 341:256-266. 10.1016/j.ydbio.2009.12.006, 20005872.
-
(2010)
Dev Biol
, vol.341
, pp. 256-266
-
-
Price, A.L.1
Modrell, M.S.2
Hannibal, R.L.3
Patel, N.H.4
-
29
-
-
20344388302
-
Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis
-
10.1073/pnas.0501101102, 1142369, 15911760
-
Pavlopoulos A, Averof M. Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis. Proc Natl Acad Sci USA 2005, 102:7888-7893. 10.1073/pnas.0501101102, 1142369, 15911760.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 7888-7893
-
-
Pavlopoulos, A.1
Averof, M.2
-
30
-
-
69549128387
-
Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean
-
10.1073/pnas.0902804106, 2728992, 19666530
-
Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof M. Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean. Proc Natl Acad Sci USA 2009, 106:13897-13902. 10.1073/pnas.0902804106, 2728992, 19666530.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 13897-13902
-
-
Pavlopoulos, A.1
Kontarakis, Z.2
Liubicich, D.M.3
Serano, J.M.4
Akam, M.5
Patel, N.H.6
Averof, M.7
-
31
-
-
79957643956
-
A versatile strategy for gene trapping and trap conversion in emerging model organisms
-
Kontarakis Z, Pavlopoulos A, Kiupakis A, Konstantinides N, Douris V, Averof M. A versatile strategy for gene trapping and trap conversion in emerging model organisms. Development 2011,
-
(2011)
Development
-
-
Kontarakis, Z.1
Pavlopoulos, A.2
Kiupakis, A.3
Konstantinides, N.4
Douris, V.5
Averof, M.6
-
32
-
-
77957656702
-
A prominent requirement for single-minded and the ventral midline in patterning the dorsoventral axis of the crustacean Parhyale hawaiensis
-
10.1242/dev.055160, 2947759, 20843860
-
Vargas-Vila MA, Hannibal RL, Parchem RJ, Liu PZ, Patel NH. A prominent requirement for single-minded and the ventral midline in patterning the dorsoventral axis of the crustacean Parhyale hawaiensis. Development 2010, 137:3469-3476. 10.1242/dev.055160, 2947759, 20843860.
-
(2010)
Development
, vol.137
, pp. 3469-3476
-
-
Vargas-Vila, M.A.1
Hannibal, R.L.2
Parchem, R.J.3
Liu, P.Z.4
Patel, N.H.5
-
33
-
-
59649127328
-
Germ cells in the crustacean Parhyale hawaiensis depend on Vasa protein for their maintenance but not for their formation
-
Özhan-Kizil G, Havemann J, Gerberding M. Germ cells in the crustacean Parhyale hawaiensis depend on Vasa protein for their maintenance but not for their formation. Dev Biol 2009, 327:320-239.
-
(2009)
Dev Biol
, vol.327
, pp. 320-1239
-
-
Özhan-Kizil, G.1
Havemann, J.2
Gerberding, M.3
-
34
-
-
69549122200
-
Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology
-
10.1073/pnas.0903105106, 2720850, 19666517
-
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH. Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology. Proc Natl Acad Sci USA 2009, 106:13892-13896. 10.1073/pnas.0903105106, 2720850, 19666517.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 13892-13896
-
-
Liubicich, D.M.1
Serano, J.M.2
Pavlopoulos, A.3
Kontarakis, Z.4
Protas, M.E.5
Kwan, E.6
Chatterjee, S.7
Tran, K.D.8
Averof, M.9
Patel, N.H.10
-
35
-
-
77952011469
-
BAC library for the amphipod crustacean, Parhyale hawaiensis
-
10.1016/j.ygeno.2010.03.005, 20298775
-
Parchem RJ, Poulin F, Stuart AB, Amemiya CT, Patel NH. BAC library for the amphipod crustacean, Parhyale hawaiensis. Genomics 2010, 95:261-267. 10.1016/j.ygeno.2010.03.005, 20298775.
-
(2010)
Genomics
, vol.95
, pp. 261-267
-
-
Parchem, R.J.1
Poulin, F.2
Stuart, A.B.3
Amemiya, C.T.4
Patel, N.H.5
-
36
-
-
0035895505
-
The sequence of the human genome
-
10.1126/science.1058040, 11181995
-
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, et al. The sequence of the human genome. Science 2001, 291:1304-1351. 10.1126/science.1058040, 11181995.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
-
37
-
-
0035865087
-
A physical map of the human genome
-
10.1038/35057157, 11237014
-
McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, et al. A physical map of the human genome. Nature 2001, 409:934-941. 10.1038/35057157, 11237014.
-
(2001)
Nature
, vol.409
, pp. 934-941
-
-
McPherson, J.D.1
Marra, M.2
Hillier, L.3
Waterston, R.H.4
Chinwalla, A.5
Wallis, J.6
Sekhon, M.7
Wylie, K.8
Mardis, E.R.9
Wilson, R.K.10
-
38
-
-
0000242304
-
Specification of the basic body pattern in insect embryogenesis
-
Sander K. Specification of the basic body pattern in insect embryogenesis. Advances in Insect Physiology 1976, 12:125-238.
-
(1976)
Advances in Insect Physiology
, vol.12
, pp. 125-238
-
-
Sander, K.1
-
39
-
-
77952183473
-
Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon
-
10.1186/1471-2164-11-310, 2887415, 20478048
-
O'Neil ST, Dzurisin JDK, Carmichael RD, Lobo NF, Emrich SJ, Hellmann JJ. Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon. BMC genomics 2010, 11:310. 10.1186/1471-2164-11-310, 2887415, 20478048.
-
(2010)
BMC genomics
, vol.11
, pp. 310
-
-
O'Neil, S.T.1
Dzurisin, J.D.K.2
Carmichael, R.D.3
Lobo, N.F.4
Emrich, S.J.5
Hellmann, J.J.6
-
40
-
-
77951894310
-
Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
-
10.1186/1471-2164-11-180, 2851599, 20233449
-
Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA. Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC genomics 2010, 11:180. 10.1186/1471-2164-11-180, 2851599, 20233449.
-
(2010)
BMC genomics
, vol.11
, pp. 180
-
-
Parchman, T.L.1
Geist, K.S.2
Grahnen, J.A.3
Benkman, C.W.4
Buerkle, C.A.5
-
41
-
-
73949154587
-
A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)
-
10.1016/j.ympev.2009.08.014, 19695333
-
Roeding F, Borner J, Kube M, Klages S, Reinhardt R, Burmester T. A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator). Mol Phylogenet Evol 2009, 53:826-834. 10.1016/j.ympev.2009.08.014, 19695333.
-
(2009)
Mol Phylogenet Evol
, vol.53
, pp. 826-834
-
-
Roeding, F.1
Borner, J.2
Kube, M.3
Klages, S.4
Reinhardt, R.5
Burmester, T.6
-
42
-
-
48249125753
-
High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
-
10.1186/1471-2164-9-312, 2483731, 18590545
-
Novaes E, Drost DR, Farmerie WG, Pappas GJ, Grattapaglia D, Sederoff RR, Kirst M. High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC genomics 2008, 9:312. 10.1186/1471-2164-9-312, 2483731, 18590545.
-
(2008)
BMC genomics
, vol.9
, pp. 312
-
-
Novaes, E.1
Drost, D.R.2
Farmerie, W.G.3
Pappas, G.J.4
Grattapaglia, D.5
Sederoff, R.R.6
Kirst, M.7
-
43
-
-
41149167170
-
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
-
10.1111/j.1365-294X.2008.03666.x, 18266620
-
Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol Ecol 2008, 17:1636-1647. 10.1111/j.1365-294X.2008.03666.x, 18266620.
-
(2008)
Mol Ecol
, vol.17
, pp. 1636-1647
-
-
Vera, J.C.1
Wheat, C.W.2
Fescemyer, H.W.3
Frilander, M.J.4
Crawford, D.L.5
Hanski, I.6
Marden, J.H.7
-
44
-
-
67649464356
-
Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis
-
10.1186/1471-2164-10-234, 2700817, 19454017
-
Hahn DA, Ragland GJ, Shoemaker DD, Denlinger DL. Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis. BMC genomics 2009, 10:234. 10.1186/1471-2164-10-234, 2700817, 19454017.
-
(2009)
BMC genomics
, vol.10
, pp. 234
-
-
Hahn, D.A.1
Ragland, G.J.2
Shoemaker, D.D.3
Denlinger, D.L.4
-
45
-
-
66749182204
-
Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx
-
10.1186/1471-2164-10-219, 2689275, 19435504
-
Meyer E, Aglyamova GV, Wang S, Buchanan-Carter J, Abrego D, Colbourne JK, Willis BL, Matz MV. Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC genomics 2009, 10:219. 10.1186/1471-2164-10-219, 2689275, 19435504.
-
(2009)
BMC genomics
, vol.10
, pp. 219
-
-
Meyer, E.1
Aglyamova, G.V.2
Wang, S.3
Buchanan-Carter, J.4
Abrego, D.5
Colbourne, J.K.6
Willis, B.L.7
Matz, M.V.8
-
46
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
10.1093/bioinformatics/bti610, 16081474
-
Conesa A, Götz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676. 10.1093/bioinformatics/bti610, 16081474.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Götz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
47
-
-
77249139172
-
Evidence for multiple independent origins of trans-splicing in Metazoa
-
10.1093/molbev/msp286, 19942614
-
Douris V, Telford MJ, Averof M. Evidence for multiple independent origins of trans-splicing in Metazoa. Mol Biol Evol 2010, 27:684-693. 10.1093/molbev/msp286, 19942614.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 684-693
-
-
Douris, V.1
Telford, M.J.2
Averof, M.3
-
48
-
-
77954225164
-
Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: frequent lineage-specific duplications and losses of developmental genes
-
Shigenobu S, Bickel RD, Brisson JA, Butts T, Chang C-C, Christiaens O, Davis GK, Duncan EJ, Ferrier DEK, Iga M, et al. Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: frequent lineage-specific duplications and losses of developmental genes. Insect Mol Biol 2010, 19(Suppl 2):47-62.
-
(2010)
Insect Mol Biol
, vol.19
, Issue.SUPPL. 2
, pp. 47-62
-
-
Shigenobu, S.1
Bickel, R.D.2
Brisson, J.A.3
Butts, T.4
Chang, C.-C.5
Christiaens, O.6
Davis, G.K.7
Duncan, E.J.8
Ferrier, D.E.K.9
Iga, M.10
-
49
-
-
46449117597
-
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
-
10.1101/gr.073676.107, 2493399, 18562680
-
Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res 2008, 18:1100-1111. 10.1101/gr.073676.107, 2493399, 18562680.
-
(2008)
Genome Res
, vol.18
, pp. 1100-1111
-
-
Holland, L.Z.1
Albalat, R.2
Azumi, K.3
Benito-Gutiérrez, E.4
Blow, M.J.5
Bronner-Fraser, M.6
Brunet, F.7
Butts, T.8
Candiani, S.9
Dishaw, L.J.10
-
50
-
-
0039445009
-
Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins
-
10.1093/nar/25.12.2464, 146766, 9171100
-
Böhm S, Frishman D, Mewes HW. Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 1997, 25:2464-2469. 10.1093/nar/25.12.2464, 146766, 9171100.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2464-2469
-
-
Böhm, S.1
Frishman, D.2
Mewes, H.W.3
-
51
-
-
55149125112
-
The evolutionary relationship between gene duplication and alternative splicing
-
10.1016/j.gene.2008.09.002, 18835337
-
Jin L, Kryukov K, Clemente JC, Komiyama T, Suzuki Y, Imanishi T, Ikeo K, Gojobori T. The evolutionary relationship between gene duplication and alternative splicing. Gene 2008, 427:19-31. 10.1016/j.gene.2008.09.002, 18835337.
-
(2008)
Gene
, vol.427
, pp. 19-31
-
-
Jin, L.1
Kryukov, K.2
Clemente, J.C.3
Komiyama, T.4
Suzuki, Y.5
Imanishi, T.6
Ikeo, K.7
Gojobori, T.8
-
52
-
-
33749080817
-
Expression of otd orthologs in the amphipod crustacean, Parhyale hawaiensis
-
10.1007/s00427-006-0074-7, 16773341
-
Browne WW, Schmid BGM, Wimmer EA, Martindale MQ. Expression of otd orthologs in the amphipod crustacean, Parhyale hawaiensis. Development Genes and Evolution 2006, 216:581-595. 10.1007/s00427-006-0074-7, 16773341.
-
(2006)
Development Genes and Evolution
, vol.216
, pp. 581-595
-
-
Browne, W.W.1
Schmid, B.G.M.2
Wimmer, E.A.3
Martindale, M.Q.4
-
53
-
-
11144270134
-
The embryonic development of the amphipod crustacean Parhyale hawaiensis
-
University of Chicago, Molecular Genetics and Cell Biology
-
Browne WE. The embryonic development of the amphipod crustacean Parhyale hawaiensis. PhD 2003, University of Chicago, Molecular Genetics and Cell Biology.
-
(2003)
PhD
-
-
Browne, W.E.1
-
54
-
-
84857138643
-
Notch signaling and segmentation in Parhyale hawaiensis
-
University of California, Berkeley, Molecular and Cell Biology
-
O'Day KE. Notch signaling and segmentation in Parhyale hawaiensis. PhD 2006, University of California, Berkeley, Molecular and Cell Biology.
-
(2006)
PhD
-
-
O'Day, K.E.1
-
55
-
-
23244446129
-
Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis
-
10.1002/gene.20145, 15986449
-
Browne WE, Price AL, Gerberding M, Patel NH. Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis. Genesis 2005, 42:124-149. 10.1002/gene.20145, 15986449.
-
(2005)
Genesis
, vol.42
, pp. 124-149
-
-
Browne, W.E.1
Price, A.L.2
Gerberding, M.3
Patel, N.H.4
-
56
-
-
80053617774
-
Gastrulation and Mesodem Development in Parhyale hawaiensis
-
University of Chicago, Committee on Developmental Biology
-
Price AL. Gastrulation and Mesodem Development in Parhyale hawaiensis. 2005, University of Chicago, Committee on Developmental Biology.
-
(2005)
-
-
Price, A.L.1
-
57
-
-
37749028310
-
Investigating divergent mechanisms of mesoderm development in arthropods: the expression of Ph-twist and Ph-mef2 in Parhyale hawaiensis
-
Price AL, Patel NH. Investigating divergent mechanisms of mesoderm development in arthropods: the expression of Ph-twist and Ph-mef2 in Parhyale hawaiensis. Journal of Experimental Zoology Part B: Molecular Development and Evolution 2008, 310:24-40.
-
(2008)
Journal of Experimental Zoology Part B: Molecular Development and Evolution
, vol.310
, pp. 24-40
-
-
Price, A.L.1
Patel, N.H.2
-
58
-
-
0037223971
-
The evolution of signalling pathways in animal development
-
10.1038/nrg977, 12509752
-
Pires-daSilva A, Sommer RJ. The evolution of signalling pathways in animal development. Nat Rev Genet 2003, 4:39-49. 10.1038/nrg977, 12509752.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 39-49
-
-
Pires-daSilva, A.1
Sommer, R.J.2
-
59
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
10.1093/nar/gkp896, 2808910, 19880382
-
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 2010, 38:D355-360. 10.1093/nar/gkp896, 2808910, 19880382.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
60
-
-
0028042492
-
On beyond classic RACE (rapid amplification of cDNA ends)
-
Frohman MA. On beyond classic RACE (rapid amplification of cDNA ends). PCR Methods Appl 1994, 4:S40-58.
-
(1994)
PCR Methods Appl
, vol.4
-
-
Frohman, M.A.1
-
61
-
-
53649088131
-
Applications of next-generation sequencing technologies in functional genomics
-
10.1016/j.ygeno.2008.07.001, 18703132
-
Morozova O, Marra MA. Applications of next-generation sequencing technologies in functional genomics. Genomics 2008, 92:255-264. 10.1016/j.ygeno.2008.07.001, 18703132.
-
(2008)
Genomics
, vol.92
, pp. 255-264
-
-
Morozova, O.1
Marra, M.A.2
-
62
-
-
33746693659
-
Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch
-
10.1016/j.ympev.2006.04.021, 16781168
-
Mallatt J, Giribet G. Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch. Mol Phylogenet Evol 2006, 40:772-794. 10.1016/j.ympev.2006.04.021, 16781168.
-
(2006)
Mol Phylogenet Evol
, vol.40
, pp. 772-794
-
-
Mallatt, J.1
Giribet, G.2
-
63
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
10.1038/nature06614, 18322464
-
Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, Smith SA, Seaver E, Rouse GW, Obst M, Edgecombe GD, et al. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 2008, 452:745-749. 10.1038/nature06614, 18322464.
-
(2008)
Nature
, vol.452
, pp. 745-749
-
-
Dunn, C.W.1
Hejnol, A.2
Matus, D.Q.3
Pang, K.4
Browne, W.E.5
Smith, S.A.6
Seaver, E.7
Rouse, G.W.8
Obst, M.9
Edgecombe, G.D.10
-
64
-
-
72749099971
-
Assessing the root of bilaterian animals with scalable phylogenomic methods
-
Hejnol A, Obst M, Stamatakis A, Ott M, Rouse GW, Edgecombe GD, Martinez P, Baguna J, Bailly X, Jondelius U, et al. Assessing the root of bilaterian animals with scalable phylogenomic methods. Proc R Soc Lond B Biol Sci 2009, 276:4261-4270.
-
(2009)
Proc R Soc Lond B Biol Sci
, vol.276
, pp. 4261-4270
-
-
Hejnol, A.1
Obst, M.2
Stamatakis, A.3
Ott, M.4
Rouse, G.W.5
Edgecombe, G.D.6
Martinez, P.7
Baguna, J.8
Bailly, X.9
Jondelius, U.10
-
65
-
-
0036094818
-
An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks
-
Gaunt MW, Miles MA. An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks. Mol Biol Evol 2002, 19:748-761.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 748-761
-
-
Gaunt, M.W.1
Miles, M.A.2
-
66
-
-
1642290708
-
The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships
-
10.1073/pnas.0306212101, 374336, 15004272
-
Fanenbruck M, Harzsch S, Wagele JW. The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships. Proc Natl Acad Sci USA 2004, 101:3868-3873. 10.1073/pnas.0306212101, 374336, 15004272.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 3868-3873
-
-
Fanenbruck, M.1
Harzsch, S.2
Wagele, J.W.3
-
67
-
-
77950557579
-
Arthropod phylogeny revisited, with a focus on crustacean relationships
-
10.1016/j.asd.2009.10.003, 22073781
-
Koenemann S, Jenner RA, Hoenemann M, Stemme T, von Reumont BM. Arthropod phylogeny revisited, with a focus on crustacean relationships. Arthropod Structure & Development 2010, 39:88-110. 10.1016/j.asd.2009.10.003, 22073781.
-
(2010)
Arthropod Structure & Development
, vol.39
, pp. 88-110
-
-
Koenemann, S.1
Jenner, R.A.2
Hoenemann, M.3
Stemme, T.4
von Reumont, B.M.5
-
68
-
-
77950593367
-
Phylogeny of Branchiopoda (Crustacea) - Character Evolution and Constribution of Uniquely Preserved Fossils
-
Olesen J. Phylogeny of Branchiopoda (Crustacea) - Character Evolution and Constribution of Uniquely Preserved Fossils. Arthropod Systematics and Phylogeny 2009, 67:3-39.
-
(2009)
Arthropod Systematics and Phylogeny
, vol.67
, pp. 3-39
-
-
Olesen, J.1
-
69
-
-
33748154504
-
Molecular phylogeny of the Branchiopoda (Crustacea)--multiple approaches suggest a 'diplostracan' ancestry of the Notostraca
-
10.1016/j.ympev.2006.06.006, 16904916
-
Stenderup JT, Olesen J, Glenner H. Molecular phylogeny of the Branchiopoda (Crustacea)--multiple approaches suggest a 'diplostracan' ancestry of the Notostraca. Mol Phylogenet Evol 2006, 41:182-194. 10.1016/j.ympev.2006.06.006, 16904916.
-
(2006)
Mol Phylogenet Evol
, vol.41
, pp. 182-194
-
-
Stenderup, J.T.1
Olesen, J.2
Glenner, H.3
-
70
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
10.1093/nar/gkl842, 1716718, 17130148
-
Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 2007, 35:D61-65. 10.1093/nar/gkl842, 1716718, 17130148.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
71
-
-
74049108922
-
BLAST+: architecture and applications
-
10.1186/1471-2105-10-421, 2803857, 20003500
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BLAST+: architecture and applications. BMC Bioinformatics 2009, 10:421. 10.1186/1471-2105-10-421, 2803857, 20003500.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
72
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556, 3037419, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-29. 10.1038/75556, 3037419, 10802651.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
73
-
-
84857140501
-
B2G-FAR: A Species Centered GO Annotation Repository
-
B2G-FAR: A Species Centered GO Annotation Repository. , http://bioinfo.cipf.es/b2gfar/showspecies?species=7227
-
-
-
-
74
-
-
79951580071
-
Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences
-
Ishiwata K, Sasaki G, Ogawa J, Miyata T, Su Z-H. Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences. Mol Phylogenet Evol 2010, 158:169-180.
-
(2010)
Mol Phylogenet Evol
, vol.158
, pp. 169-180
-
-
Ishiwata, K.1
Sasaki, G.2
Ogawa, J.3
Miyata, T.4
Su, Z.-H.5
-
75
-
-
0034958911
-
The phylogeny of the extant hexapod orders
-
Wheeler WC, Whiting M, Wheeler QD, Carpenter JM. The phylogeny of the extant hexapod orders. Cladistics 2001, 17:113-169.
-
(2001)
Cladistics
, vol.17
, pp. 113-169
-
-
Wheeler, W.C.1
Whiting, M.2
Wheeler, Q.D.3
Carpenter, J.M.4
|