Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C 3 and C 4 species

Journal of Experimental Botany

Volumn 62, Issue 9, 2011, Pages 3093-3102

  Bräutigam, Andrea ^a   Mullick, Thomas ^a   Schliesky, Simon ^a   Weber, Andreas P M ^a  

^a HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

Assembly; C 4; next generation sequencing; transcriptome

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; PLANT RNA; TRANSCRIPTOME;

ARABIDOPSIS; ARTICLE; BIOLOGICAL MODEL; CHEMISTRY; CLEOME; COMPUTER PROGRAM; COMPUTER SIMULATION; CONTIG MAPPING; GENE LIBRARY; GENETICS; HIGH THROUGHPUT SEQUENCING; METHODOLOGY; MOLECULAR GENETICS; NUCLEIC ACID DATABASE; NUCLEOTIDE SEQUENCE; PLANT GENOME; PLANT LEAF; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

ARABIDOPSIS; BASE SEQUENCE; CLEOME; COMPUTER SIMULATION; CONTIG MAPPING; DATABASES, NUCLEIC ACID; DNA, COMPLEMENTARY; GENE LIBRARY; GENOME, PLANT; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PLANT LEAVES; POLYMORPHISM, SINGLE NUCLEOTIDE; RNA, MESSENGER; RNA, PLANT; SEQUENCE ANALYSIS, RNA; SOFTWARE; TRANSCRIPTOME;

ARABIDOPSIS; ARABIDOPSIS THALIANA; CLEOME; CLEOME SPINOSA; GYNANDROPSIS GYNANDRA;

EID: 79957543095     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/err029     Document Type: Article

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