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Volumn 146, Issue , 2014, Pages 39-45

Whole-cell imaging of the budding yeast Saccharomyces cerevisiae by high-voltage scanning transmission electron tomography

Author keywords

Electron tomography; High voltage electron microscopy; Organelle; Scanning transmission electron microscopy; Thick specimen; Yeast

Indexed keywords

CELL PROLIFERATION; ELECTRIC IMPEDANCE TOMOGRAPHY; ELECTRON MICROSCOPES; HIGH RESOLUTION TRANSMISSION ELECTRON MICROSCOPY; INELASTIC SCATTERING; SCANNING; SCANNING ELECTRON MICROSCOPY; TRANSMISSIONS; YEAST;

EID: 84902347716     PISSN: 03043991     EISSN: 18792723     Source Type: Journal    
DOI: 10.1016/j.ultramic.2014.05.008     Document Type: Article
Times cited : (23)

References (40)
  • 1
    • 0029026737 scopus 로고
    • Approaches to large-scale structures
    • Frank J. Approaches to large-scale structures. Curr. Opin. Struct. Biol. 1995, 5:194-201.
    • (1995) Curr. Opin. Struct. Biol. , vol.5 , pp. 194-201
    • Frank, J.1
  • 2
  • 3
    • 0014719475 scopus 로고
    • High resolution observations of biological sections with a high voltage electron microscope
    • Hama K., Nagata F. High resolution observations of biological sections with a high voltage electron microscope. J. Electron. Microsc. 1970, 19:170-175.
    • (1970) J. Electron. Microsc. , vol.19 , pp. 170-175
    • Hama, K.1    Nagata, F.2
  • 4
    • 38349097382 scopus 로고    scopus 로고
    • Microscopic tomography with ultra-HVEM and applications
    • Takaoka A., Hasegawa T., Yoshida K., Mori H. Microscopic tomography with ultra-HVEM and applications. Ultramicroscopy 2008, 108:230-238.
    • (2008) Ultramicroscopy , vol.108 , pp. 230-238
    • Takaoka, A.1    Hasegawa, T.2    Yoshida, K.3    Mori, H.4
  • 5
    • 0029680224 scopus 로고    scopus 로고
    • Imaging of thick sections of nervous tissue with energy-filtering transmission electron microscopy
    • Kortje K.H., Paulus U., Ibsch M., Rahmann H. Imaging of thick sections of nervous tissue with energy-filtering transmission electron microscopy. J. Microsc. 1996, 183:89-101.
    • (1996) J. Microsc. , vol.183 , pp. 89-101
    • Kortje, K.H.1    Paulus, U.2    Ibsch, M.3    Rahmann, H.4
  • 6
    • 7444230915 scopus 로고    scopus 로고
    • Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement
    • Bouwer J.C., Mackey M.R., Lawrence A., Deerinck T.J., Jones Y.Z., Terada M., et al. Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement. J. Struct. Biol. 2004, 148:297-306.
    • (2004) J. Struct. Biol. , vol.148 , pp. 297-306
    • Bouwer, J.C.1    Mackey, M.R.2    Lawrence, A.3    Deerinck, T.J.4    Jones, Y.Z.5    Terada, M.6
  • 7
    • 84934435038 scopus 로고    scopus 로고
    • High-pressure freezing for scanning transmission electron tomography analysis of cellular organelles
    • Walther P., Schmid E., Hohn K. High-pressure freezing for scanning transmission electron tomography analysis of cellular organelles. Methods Mol. Biol. 2013, 931:525-535.
    • (2013) Methods Mol. Biol. , vol.931 , pp. 525-535
    • Walther, P.1    Schmid, E.2    Hohn, K.3
  • 8
    • 0027176580 scopus 로고
    • Applications of medium-voltage STEM for the 3-D study of organelles within very thick sections
    • Beorchia A., Heliot L., Menager M., Kaplan H., Ploton D. Applications of medium-voltage STEM for the 3-D study of organelles within very thick sections. J. Microsc. 1993, 170:247-258.
    • (1993) J. Microsc. , vol.170 , pp. 247-258
    • Beorchia, A.1    Heliot, L.2    Menager, M.3    Kaplan, H.4    Ploton, D.5
  • 12
    • 0035926871 scopus 로고    scopus 로고
    • Z-Contrast tomography: a technique in three-dimensional nanostructural analysis based on Rutherford scattering
    • Midgley P.A., Weyland M., Thomas J.M., Johnson B.F.G. Z-Contrast tomography: a technique in three-dimensional nanostructural analysis based on Rutherford scattering. Chem. Commun. 2001, 907-908.
    • (2001) Chem. Commun. , pp. 907-908
    • Midgley, P.A.1    Weyland, M.2    Thomas, J.M.3    Johnson, B.F.G.4
  • 13
    • 77955517227 scopus 로고    scopus 로고
    • Optimization of STEM tomography acquisition--a comparison of convergent beam and parallel beam STEM tomography
    • Biskupek J., Leschner J., Walther P., Kaiser U. Optimization of STEM tomography acquisition--a comparison of convergent beam and parallel beam STEM tomography. Ultramicroscopy 2010, 110:1231-1237.
    • (2010) Ultramicroscopy , vol.110 , pp. 1231-1237
    • Biskupek, J.1    Leschner, J.2    Walther, P.3    Kaiser, U.4
  • 15
    • 33847175490 scopus 로고    scopus 로고
    • Whole-cell investigation of microtubule cytoskeleton architecture by electron tomography
    • Höög J.L., Antony C. Whole-cell investigation of microtubule cytoskeleton architecture by electron tomography. Methods Cell Biol. 2007, 79:145-167.
    • (2007) Methods Cell Biol. , vol.79 , pp. 145-167
    • Höög, J.L.1    Antony, C.2
  • 16
    • 79952064255 scopus 로고    scopus 로고
    • Quantitative analysis of yeast internal architecture using soft X-ray tomography
    • Uchida M., Sun Y., McDermott G., Knoechel C., Le Gros M.A., Parkinson D., et al. Quantitative analysis of yeast internal architecture using soft X-ray tomography. Yeast 2011, 28:227-236.
    • (2011) Yeast , vol.28 , pp. 227-236
    • Uchida, M.1    Sun, Y.2    McDermott, G.3    Knoechel, C.4    Le Gros, M.A.5    Parkinson, D.6
  • 17
    • 33749050824 scopus 로고    scopus 로고
    • Towards neural circuit reconstruction with volume electron microscopy techniques
    • Briggman K.L., Denk W. Towards neural circuit reconstruction with volume electron microscopy techniques. Curr. Opin. Neurobiol. 2006, 16:562-570.
    • (2006) Curr. Opin. Neurobiol. , vol.16 , pp. 562-570
    • Briggman, K.L.1    Denk, W.2
  • 18
    • 14044262855 scopus 로고    scopus 로고
    • Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
    • Denk W., Horstmann H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS Biol. 2004, 2:e329.
    • (2004) PLoS Biol. , vol.2
    • Denk, W.1    Horstmann, H.2
  • 19
    • 65149085920 scopus 로고    scopus 로고
    • 3D structural imaging of the brain with photons and electrons
    • Helmstaedter M., Briggman K.L., Denk W. 3D structural imaging of the brain with photons and electrons. Curr. Opin. Neurobiol. 2008, 18:633-641.
    • (2008) Curr. Opin. Neurobiol. , vol.18 , pp. 633-641
    • Helmstaedter, M.1    Briggman, K.L.2    Denk, W.3
  • 20
    • 41149120500 scopus 로고    scopus 로고
    • Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling
    • Knott G., Marchman H., Wall D., Lich B. Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling. J. Neurosci. 2008, 28:2959-2964.
    • (2008) J. Neurosci. , vol.28 , pp. 2959-2964
    • Knott, G.1    Marchman, H.2    Wall, D.3    Lich, B.4
  • 21
    • 84863974310 scopus 로고    scopus 로고
    • High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy
    • Wei D., Jacobs S., Modla S., Zhang S., Young C.L., Cirino R., et al. High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy. Biotechniques 2012, 53:41-48.
    • (2012) Biotechniques , vol.53 , pp. 41-48
    • Wei, D.1    Jacobs, S.2    Modla, S.3    Zhang, S.4    Young, C.L.5    Cirino, R.6
  • 22
    • 75349090585 scopus 로고    scopus 로고
    • ATP-bound form of the D1 AAA domain inhibits an essential function of Cdc48p/p97
    • Esaki M., Ogura T. ATP-bound form of the D1 AAA domain inhibits an essential function of Cdc48p/p97. Biochem. Cell Biol. 2010, 88:109-117.
    • (2010) Biochem. Cell Biol. , vol.88 , pp. 109-117
    • Esaki, M.1    Ogura, T.2
  • 23
    • 84864382366 scopus 로고    scopus 로고
    • Cdc48p/p97-mediated regulation of mitochondrial morphology is Vms1p-independent
    • Esaki M., Ogura T. Cdc48p/p97-mediated regulation of mitochondrial morphology is Vms1p-independent. J. Struct. Biol. 2012, 179:112-120.
    • (2012) J. Struct. Biol. , vol.179 , pp. 112-120
    • Esaki, M.1    Ogura, T.2
  • 24
    • 0034671421 scopus 로고    scopus 로고
    • Transmission electron microscopy of yeast
    • Wright R. Transmission electron microscopy of yeast. Microsc. Res. Tech. 2000, 51:496-510.
    • (2000) Microsc. Res. Tech. , vol.51 , pp. 496-510
    • Wright, R.1
  • 25
    • 84876952432 scopus 로고    scopus 로고
    • Development of an environmental high-voltage electron microscope for reaction science
    • Tanaka N., Usukura J., Kusunoki M., Saito Y., Sasaki K., Tanji T., et al. Development of an environmental high-voltage electron microscope for reaction science. Microscopy 2013, 62:205-215.
    • (2013) Microscopy , vol.62 , pp. 205-215
    • Tanaka, N.1    Usukura, J.2    Kusunoki, M.3    Saito, Y.4    Sasaki, K.5    Tanji, T.6
  • 26
    • 0029879295 scopus 로고    scopus 로고
    • Computer visualization of three-dimensional image data using IMOD
    • Kremer J.R., Mastronarde D.N., McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 1996, 116:71-76.
    • (1996) J. Struct. Biol. , vol.116 , pp. 71-76
    • Kremer, J.R.1    Mastronarde, D.N.2    McIntosh, J.R.3
  • 27
    • 43749083934 scopus 로고    scopus 로고
    • Phase contrast electron microscopy: development of thin-film phase plates and biological applications
    • Nagayama K., Danev R. Phase contrast electron microscopy: development of thin-film phase plates and biological applications. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2008, 363:2153-2162.
    • (2008) Philos. Trans. R. Soc. Lond. B: Biol. Sci. , vol.363 , pp. 2153-2162
    • Nagayama, K.1    Danev, R.2
  • 28
    • 77955481741 scopus 로고    scopus 로고
    • Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions
    • Murata K., Liu X., Danev R., Jakana J., Schmid M.F., King J., et al. Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions. Structure 2010, 18:903-912.
    • (2010) Structure , vol.18 , pp. 903-912
    • Murata, K.1    Liu, X.2    Danev, R.3    Jakana, J.4    Schmid, M.F.5    King, J.6
  • 29
    • 0023818604 scopus 로고
    • A method for monitoring the collapse of plastic sections as a function of electron dose
    • Luther P.K., Lawrence M.C., Crowther R.A. A method for monitoring the collapse of plastic sections as a function of electron dose. Ultramicroscopy 1988, 24:7-18.
    • (1988) Ultramicroscopy , vol.24 , pp. 7-18
    • Luther, P.K.1    Lawrence, M.C.2    Crowther, R.A.3
  • 30
    • 0015546304 scopus 로고
    • The preparation and observation of thick biological sections in the high voltage electron microscope.
    • P. Favard, N. Carasso, The preparation and observation of thick biological sections in the high voltage electron microscope., J. Microsc. 97 (1973) 59-81.
    • (1973) J. Microsc. , vol.97 , pp. 59-81
    • Favard, P.1    Carasso, N.2
  • 31
    • 78651518396 scopus 로고    scopus 로고
    • Preparation of cryofixed cells for improved 3D ultrastructure with scanning transmission electron tomography
    • Hohn K., Sailer M., Wang L., Lorenz M., Schneider M.E., Walther P. Preparation of cryofixed cells for improved 3D ultrastructure with scanning transmission electron tomography. Histochem. Cell Biol. 2011, 135:1-9.
    • (2011) Histochem. Cell Biol. , vol.135 , pp. 1-9
    • Hohn, K.1    Sailer, M.2    Wang, L.3    Lorenz, M.4    Schneider, M.E.5    Walther, P.6
  • 32
    • 0014894609 scopus 로고
    • The reconstruction of a three-dimensional structure from projections and its application to electron microscopy
    • Crowther R.A., DeRosier D.J., Klug A. The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. Proc. R. Soc. Lond. A 1970, 317:319-340.
    • (1970) Proc. R. Soc. Lond. A , vol.317 , pp. 319-340
    • Crowther, R.A.1    DeRosier, D.J.2    Klug, A.3
  • 33
    • 0021119424 scopus 로고
    • Three-dimensional reconstruction of imperfect two-dimensional crystals
    • Saxton W.O., Baumeister W. Three-dimensional reconstruction of imperfect two-dimensional crystals. Ultramicroscopy 1984, 13:57-70.
    • (1984) Ultramicroscopy , vol.13 , pp. 57-70
    • Saxton, W.O.1    Baumeister, W.2
  • 34
    • 0004179720 scopus 로고    scopus 로고
    • Springer, New York, NY, J. Frank (Ed.)
    • Electron Tomography 2006, Springer, New York, NY. 2nd Edition. J. Frank (Ed.).
    • (2006) Electron Tomography
  • 35
    • 84860594033 scopus 로고    scopus 로고
    • High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching
    • Xu M., Beck M., Alber F. High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching. J. Struct. Biol. 2012, 178:152-164.
    • (2012) J. Struct. Biol. , vol.178 , pp. 152-164
    • Xu, M.1    Beck, M.2    Alber, F.3
  • 36
    • 84873139314 scopus 로고    scopus 로고
    • A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography
    • Kuybeda O., Frank G.a, Bartesaghi A., Borgnia M., Subramaniam S., Sapiro G. A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography. J. Struct. Biol. 2013, 181:116-127.
    • (2013) J. Struct. Biol. , vol.181 , pp. 116-127
    • Kuybeda, O.1    Frank, G.A.2    Bartesaghi, A.3    Borgnia, M.4    Subramaniam, S.5    Sapiro, G.6
  • 37
    • 77955528613 scopus 로고    scopus 로고
    • Dependence of beam broadening on detection angle in scanning transmission electron microtomography
    • Motoki S., Kaneko T., Aoyama Y., Nishioka H., Okura Y., Kondo Y., et al. Dependence of beam broadening on detection angle in scanning transmission electron microtomography. J. Electron Microsc. 2010, 59(Suppl 1):S45-S53.
    • (2010) J. Electron Microsc. , vol.59 , Issue.SUPPL 1
    • Motoki, S.1    Kaneko, T.2    Aoyama, Y.3    Nishioka, H.4    Okura, Y.5    Kondo, Y.6
  • 38
    • 14844330221 scopus 로고    scopus 로고
    • Structural studies by electron tomography: from cells to molecules
    • Lucic V., Forster F., Baumeister W. Structural studies by electron tomography: from cells to molecules. Annu. Rev. Biochem. 2005, 74:833-865.
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 833-865
    • Lucic, V.1    Forster, F.2    Baumeister, W.3
  • 39
    • 0027366167 scopus 로고
    • Isolation of the yeast nuclear pore complex
    • Rout M.P., Blobel G. Isolation of the yeast nuclear pore complex. J. Cell Biol. 1993, 123:771-783.
    • (1993) J. Cell Biol. , vol.123 , pp. 771-783
    • Rout, M.P.1    Blobel, G.2


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