-
1
-
-
0031896503
-
Characterization of the Aspergillus nidulans nmrA gene involved in nitrogen metabolite repression
-
Andrianopoulos, A., Kourambas, S., Sharp, J.A., Davis, M.A., and Hynes, M.J. (1998) Characterization of the Aspergillus nidulans nmrA gene involved in nitrogen metabolite repression. J Bacteriol 180: 1973-1977.
-
(1998)
J Bacteriol
, vol.180
, pp. 1973-1977
-
-
Andrianopoulos, A.1
Kourambas, S.2
Sharp, J.A.3
Davis, M.A.4
Hynes, M.J.5
-
2
-
-
0000106821
-
Nitrogen metabolite repression in Aspergillus nidulans - a farewell to tamA?
-
Arst, H.N., Brownlee, A.G., and Cousen, S.A. (1982) Nitrogen metabolite repression in Aspergillus nidulans - a farewell to tamA? Curr Genet 6: 245-257.
-
(1982)
Curr Genet
, vol.6
, pp. 245-257
-
-
Arst, H.N.1
Brownlee, A.G.2
Cousen, S.A.3
-
3
-
-
0015840490
-
Nitrogen metabolite repression in Aspergillus nidulans
-
Arst, H.N., Jr, and Cove, D.J. (1973) Nitrogen metabolite repression in Aspergillus nidulans. Mol Gen Genet 126: 111-141.
-
(1973)
Mol Gen Genet
, vol.126
, pp. 111-141
-
-
Arst Jr., H.N.1
Cove, D.J.2
-
4
-
-
0015694637
-
A mutant of Aspergillus nidulans lacking NADP-linked glutamate dehydrogenase
-
Arst, H.N., Jr, and MacDonald, D.W. (1973) A mutant of Aspergillus nidulans lacking NADP-linked glutamate dehydrogenase. Mol Gen Genet 122: 261-265.
-
(1973)
Mol Gen Genet
, vol.122
, pp. 261-265
-
-
Arst Jr., H.N.1
MacDonald, D.W.2
-
5
-
-
0030885616
-
GDH3 encodes a glutamate dehydrogenase isozyme, a previously unrecognized route for glutamate biosynthesis in Saccharomyces cerevisiae
-
Avendano, A., Deluna, A., Olivera, H., Valenzuela, L., and Gonzalez, A. (1997) GDH3 encodes a glutamate dehydrogenase isozyme, a previously unrecognized route for glutamate biosynthesis in Saccharomyces cerevisiae. J Bacteriol 179: 5594-5597.
-
(1997)
J Bacteriol
, vol.179
, pp. 5594-5597
-
-
Avendano, A.1
Deluna, A.2
Olivera, H.3
Valenzuela, L.4
Gonzalez, A.5
-
6
-
-
57749121616
-
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
-
Badis, G., Chan, E.T., van Bakel, H., Pena-Castillo, L., Tillo, D., Tsui, K., etal. (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32: 878-887.
-
(2008)
Mol Cell
, vol.32
, pp. 878-887
-
-
Badis, G.1
Chan, E.T.2
van Bakel, H.3
Pena-Castillo, L.4
Tillo, D.5
Tsui, K.6
-
7
-
-
0025942063
-
Manipulation of the 'zinc cluster' region of transcriptional activator LEU3 by site-directed mutagenesis
-
Bai, Y.L., and Kohlhaw, G.B. (1991) Manipulation of the 'zinc cluster' region of transcriptional activator LEU3 by site-directed mutagenesis. Nucleic Acids Res 19: 5991-5997.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 5991-5997
-
-
Bai, Y.L.1
Kohlhaw, G.B.2
-
8
-
-
33645086650
-
The GATA factor AreA regulates localization and in vivo binding site occupancy of the nitrate activator NirA
-
Berger, H., Pachlinger, R., Morozov, I., Goller, S., Narendja, F., Caddick, M., and Strauss, J. (2006) The GATA factor AreA regulates localization and in vivo binding site occupancy of the nitrate activator NirA. Mol Microbiol 59: 433-446.
-
(2006)
Mol Microbiol
, vol.59
, pp. 433-446
-
-
Berger, H.1
Pachlinger, R.2
Morozov, I.3
Goller, S.4
Narendja, F.5
Caddick, M.6
Strauss, J.7
-
9
-
-
34548403872
-
Dal81 enhances Stp1- and Stp2-dependent transcription necessitating negative modulation by inner nuclear membrane protein Asi1 in Saccharomyces cerevisiae
-
Boban, M., and Ljungdahl, P.O. (2007) Dal81 enhances Stp1- and Stp2-dependent transcription necessitating negative modulation by inner nuclear membrane protein Asi1 in Saccharomyces cerevisiae. Genetics 176: 2087-2097.
-
(2007)
Genetics
, vol.176
, pp. 2087-2097
-
-
Boban, M.1
Ljungdahl, P.O.2
-
10
-
-
0026019622
-
The DAL81 gene product is required for induced expression of two differently regulated nitrogen catabolic genes in Saccharomyces cerevisiae
-
Bricmont, P.A., Daugherty, J.R., and Cooper, T.G. (1991) The DAL81 gene product is required for induced expression of two differently regulated nitrogen catabolic genes in Saccharomyces cerevisiae. Mol Cell Biol 11: 1161-1166.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 1161-1166
-
-
Bricmont, P.A.1
Daugherty, J.R.2
Cooper, T.G.3
-
11
-
-
33749178059
-
Opposing signals differentially regulate transcript stability in Aspergillus nidulans
-
Caddick, M.X., Jones, M.G., van Tonder, J.M., Le Cordier, H., Narendja, F., Strauss, J., and Morozov, I.Y. (2006) Opposing signals differentially regulate transcript stability in Aspergillus nidulans. Mol Microbiol 62: 509-519.
-
(2006)
Mol Microbiol
, vol.62
, pp. 509-519
-
-
Caddick, M.X.1
Jones, M.G.2
van Tonder, J.M.3
Le Cordier, H.4
Narendja, F.5
Strauss, J.6
Morozov, I.Y.7
-
12
-
-
77956830265
-
Uga3 and Uga35/Dal81 transcription factors regulate UGA4 transcription in response to gamma-aminobutyric acid and leucine
-
Cardillo, S.B., Bermudez Moretti, M., and Correa Garcia, S. (2010) Uga3 and Uga35/Dal81 transcription factors regulate UGA4 transcription in response to gamma-aminobutyric acid and leucine. Eukaryot Cell 9: 1262-1271.
-
(2010)
Eukaryot Cell
, vol.9
, pp. 1262-1271
-
-
Cardillo, S.B.1
Bermudez Moretti, M.2
Correa Garcia, S.3
-
13
-
-
84859151120
-
Interplay between the transcription factors acting on the GATA- and GABA-responsive elements of Saccharomyces cerevisiae UGA promoters
-
Cardillo, S.B., Levi, C.E., Bermudez Moretti, M., and Correa Garcia, S. (2012) Interplay between the transcription factors acting on the GATA- and GABA-responsive elements of Saccharomyces cerevisiae UGA promoters. Microbiology 158: 925-935.
-
(2012)
Microbiology
, vol.158
, pp. 925-935
-
-
Cardillo, S.B.1
Levi, C.E.2
Bermudez Moretti, M.3
Correa Garcia, S.4
-
14
-
-
34547576614
-
SCOPE: a web server for practical de novo motif discovery
-
Carlson, J.M., Chakravarty, A., DeZiel, C.E., and Gross, R.H. (2007) SCOPE: a web server for practical de novo motif discovery. Nucleic Acids Res 35: W259-W264.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Carlson, J.M.1
Chakravarty, A.2
DeZiel, C.E.3
Gross, R.H.4
-
15
-
-
0028354901
-
Sequential gel mobility shift scanning of 5′ upstream sequences of the Neurospora crassa am (GDH) gene
-
Chen, H., and Kinsey, J.A. (1994) Sequential gel mobility shift scanning of 5′ upstream sequences of the Neurospora crassa am (GDH) gene. Mol Gen Genet 242: 399-403.
-
(1994)
Mol Gen Genet
, vol.242
, pp. 399-403
-
-
Chen, H.1
Kinsey, J.A.2
-
16
-
-
0031930309
-
The Neurospora aab-1 gene encodes a CCAAT binding protein homologous to yeast HAP5
-
Chen, H., Crabb, J.W., and Kinsey, J.A. (1998) The Neurospora aab-1 gene encodes a CCAAT binding protein homologous to yeast HAP5. Genetics 148: 123-130.
-
(1998)
Genetics
, vol.148
, pp. 123-130
-
-
Chen, H.1
Crabb, J.W.2
Kinsey, J.A.3
-
17
-
-
0031665468
-
Role of the regulatory gene areA of Aspergillus oryzae in nitrogen metabolism
-
Christensen, T., Hynes, M.J., and Davis, M.A. (1998) Role of the regulatory gene areA of Aspergillus oryzae in nitrogen metabolism. Appl Environ Microbiol 64: 3232-3237.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3232-3237
-
-
Christensen, T.1
Hynes, M.J.2
Davis, M.A.3
-
18
-
-
0014011862
-
The induction and repression of nitrate reductase in the fungus Aspergillus nidulans
-
Cove, D.J. (1966) The induction and repression of nitrate reductase in the fungus Aspergillus nidulans. Biochim Biophys Acta 113: 51-56.
-
(1966)
Biochim Biophys Acta
, vol.113
, pp. 51-56
-
-
Cove, D.J.1
-
19
-
-
0018389562
-
Regulation of glutamate dehydrogenases in nit-2 and am mutants of Neurospora crassa
-
Dantzig, A.H., Wiegmann, F.L., Jr, and Nason, A. (1979) Regulation of glutamate dehydrogenases in nit-2 and am mutants of Neurospora crassa. J Bacteriol 137: 1333-1339.
-
(1979)
J Bacteriol
, vol.137
, pp. 1333-1339
-
-
Dantzig, A.H.1
Wiegmann Jr., F.L.2
Nason, A.3
-
20
-
-
0027523893
-
Regulatory circuit for responses of nitrogen catabolic gene expression to the GLN3 and DAL80 proteins and nitrogen catabolite repression in Saccharomyces cerevisiae
-
Daugherty, J.R., Rai, R., el Berry, H.M., and Cooper, T.G. (1993) Regulatory circuit for responses of nitrogen catabolic gene expression to the GLN3 and DAL80 proteins and nitrogen catabolite repression in Saccharomyces cerevisiae. J Bacteriol 175: 64-73.
-
(1993)
J Bacteriol
, vol.175
, pp. 64-73
-
-
Daugherty, J.R.1
Rai, R.2
el Berry, H.M.3
Cooper, T.G.4
-
21
-
-
0023900618
-
An amdS-lacZ fusion for studying gene regulation in Aspergillus
-
Davis, M.A., Cobbett, C.S., and Hynes, M.J. (1988) An amdS-lacZ fusion for studying gene regulation in Aspergillus. Gene 63: 199-212.
-
(1988)
Gene
, vol.63
, pp. 199-212
-
-
Davis, M.A.1
Cobbett, C.S.2
Hynes, M.J.3
-
22
-
-
0029996957
-
The tamA gene of Aspergillus nidulans contains a putative zinc cluster motif which is not required for gene function
-
Davis, M.A., Small, A.J., Kourambas, S., and Hynes, M.J. (1996) The tamA gene of Aspergillus nidulans contains a putative zinc cluster motif which is not required for gene function. J Bacteriol 178: 3406-3409.
-
(1996)
J Bacteriol
, vol.178
, pp. 3406-3409
-
-
Davis, M.A.1
Small, A.J.2
Kourambas, S.3
Hynes, M.J.4
-
23
-
-
0035941209
-
NADP-glutamate dehydrogenase isoenzymes of Saccharomyces cerevisiae. Purification, kinetic properties, and physiological roles
-
DeLuna, A., Avendano, A., Riego, L., and Gonzalez, A. (2001) NADP-glutamate dehydrogenase isoenzymes of Saccharomyces cerevisiae. Purification, kinetic properties, and physiological roles. J Biol Chem 276: 43775-43783.
-
(2001)
J Biol Chem
, vol.276
, pp. 43775-43783
-
-
DeLuna, A.1
Avendano, A.2
Riego, L.3
Gonzalez, A.4
-
24
-
-
84888856908
-
Regulation of the NADP-glutamate dehydrogenase gene gdhA in Aspergillus nidulans by the Zn(II)2Cys6 transcription factor LeuB
-
Downes, D.J., Davis, M.A., Kreutzberger, S.D., Taig, B.L., and Todd, R.B. (2013) Regulation of the NADP-glutamate dehydrogenase gene gdhA in Aspergillus nidulans by the Zn(II)2Cys6 transcription factor LeuB. Microbiology 159: 2467-2480.
-
(2013)
Microbiology
, vol.159
, pp. 2467-2480
-
-
Downes, D.J.1
Davis, M.A.2
Kreutzberger, S.D.3
Taig, B.L.4
Todd, R.B.5
-
25
-
-
0031807264
-
Interaction between major nitrogen regulatory protein NIT2 and pathway-specific regulatory factor NIT4 is required for their synergistic activation of gene expression in Neurospora crassa
-
Feng, B., and Marzluf, G.A. (1998) Interaction between major nitrogen regulatory protein NIT2 and pathway-specific regulatory factor NIT4 is required for their synergistic activation of gene expression in Neurospora crassa. Mol Cell Biol 18: 3983-3990.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 3983-3990
-
-
Feng, B.1
Marzluf, G.A.2
-
26
-
-
0024120335
-
The Neurospora am gene and allelic complementation
-
Fincham, J.R. (1988) The Neurospora am gene and allelic complementation. Bioessays 9: 169-172.
-
(1988)
Bioessays
, vol.9
, pp. 169-172
-
-
Fincham, J.R.1
-
27
-
-
0017350626
-
The molecular basis of an osmotically reparable mutant of Neurospora crassa producing unstable glutamate dehydrogenase
-
Fincham, J.R., and Baron, A.J. (1977) The molecular basis of an osmotically reparable mutant of Neurospora crassa producing unstable glutamate dehydrogenase. J Mol Biol 110: 627-642.
-
(1977)
J Mol Biol
, vol.110
, pp. 627-642
-
-
Fincham, J.R.1
Baron, A.J.2
-
28
-
-
0033846090
-
The Neurospora am gene and NADP-specific glutamate dehydrogenase: mutational sequence changes and functional effects-more mutants and a summary
-
Fincham, J.R., Kinsey, J.A., Fuentes, A.M., Cummings, N.J., and Connerton, I.F. (2000) The Neurospora am gene and NADP-specific glutamate dehydrogenase: mutational sequence changes and functional effects-more mutants and a summary. Genet Res 76: 1-10.
-
(2000)
Genet Res
, vol.76
, pp. 1-10
-
-
Fincham, J.R.1
Kinsey, J.A.2
Fuentes, A.M.3
Cummings, N.J.4
Connerton, I.F.5
-
29
-
-
0035152031
-
The formamidase gene of Aspergillus nidulans: regulation by nitrogen metabolite repression and transcriptional interference by an overlapping upstream gene
-
Fraser, J.A., Davis, M.A., and Hynes, M.J. (2001) The formamidase gene of Aspergillus nidulans: regulation by nitrogen metabolite repression and transcriptional interference by an overlapping upstream gene. Genetics 157: 119-131.
-
(2001)
Genetics
, vol.157
, pp. 119-131
-
-
Fraser, J.A.1
Davis, M.A.2
Hynes, M.J.3
-
30
-
-
0025376455
-
Distant upstream regulatory sequences control the level of expression of the am (GDH) locus of Neurospora crassa
-
Frederick, G.D., and Kinsey, J.A. (1990a) Distant upstream regulatory sequences control the level of expression of the am (GDH) locus of Neurospora crassa. Curr Genet 18: 53-58.
-
(1990)
Curr Genet
, vol.18
, pp. 53-58
-
-
Frederick, G.D.1
Kinsey, J.A.2
-
31
-
-
0025320630
-
Nucleotide sequence and nuclear protein binding of the two regulatory sequences upstream of the am (GDH) gene in Neurospora
-
Frederick, G.D., and Kinsey, J.A. (1990b) Nucleotide sequence and nuclear protein binding of the two regulatory sequences upstream of the am (GDH) gene in Neurospora. Mol Gen Genet 221: 148-154.
-
(1990)
Mol Gen Genet
, vol.221
, pp. 148-154
-
-
Frederick, G.D.1
Kinsey, J.A.2
-
32
-
-
0026337660
-
Structure of the binuclear metal-binding site in the GAL4 transcription factor
-
Gardner, K.H., Pan, T., Narula, S., Rivera, E., and Coleman, J.E. (1991) Structure of the binuclear metal-binding site in the GAL4 transcription factor. Biochemistry 30: 11292-11302.
-
(1991)
Biochemistry
, vol.30
, pp. 11292-11302
-
-
Gardner, K.H.1
Pan, T.2
Narula, S.3
Rivera, E.4
Coleman, J.E.5
-
33
-
-
0022834059
-
Isolation and identification of the Aspergillus nidulans gdhA gene encoding NADP-linked glutamate dehydrogenase
-
Gurr, S.J., Hawkins, A.R., Drainas, C., and Kinghorn, J.R. (1986) Isolation and identification of the Aspergillus nidulans gdhA gene encoding NADP-linked glutamate dehydrogenase. Curr Genet 10: 761-766.
-
(1986)
Curr Genet
, vol.10
, pp. 761-766
-
-
Gurr, S.J.1
Hawkins, A.R.2
Drainas, C.3
Kinghorn, J.R.4
-
34
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison, C.T., Gordon, D.B., Lee, T.I., Rinaldi, N.J., Macisaac, K.D., Danford, T.W., etal. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431: 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
-
35
-
-
0024336791
-
Nucleotide sequence and regulation of expression of the Aspergillus nidulans gdhA gene encoding NADP dependent glutamate dehydrogenase
-
Hawkins, A.R., Gurr, S.J., Montague, P., and Kinghorn, J.R. (1989) Nucleotide sequence and regulation of expression of the Aspergillus nidulans gdhA gene encoding NADP dependent glutamate dehydrogenase. Mol Gen Genet 218: 105-111.
-
(1989)
Mol Gen Genet
, vol.218
, pp. 105-111
-
-
Hawkins, A.R.1
Gurr, S.J.2
Montague, P.3
Kinghorn, J.R.4
-
36
-
-
0025872558
-
The amdR product and a CCAAT-binding factor bind to adjacent, possibly overlapping DNA sequences in the promoter region of the Aspergillus nidulans amdS gene
-
van Heeswijck, R., and Hynes, M.J. (1991) The amdR product and a CCAAT-binding factor bind to adjacent, possibly overlapping DNA sequences in the promoter region of the Aspergillus nidulans amdS gene. Nucleic Acids Res 19: 2655-2660.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 2655-2660
-
-
van Heeswijck, R.1
Hynes, M.J.2
-
37
-
-
0035172067
-
Transcriptional autoregulation and inhibition of mRNA translation of amino acid regulator gene cpcA of filamentous fungus Aspergillus nidulans
-
Hoffmann, B., Valerius, O., Andermann, M., and Braus, G.H. (2001) Transcriptional autoregulation and inhibition of mRNA translation of amino acid regulator gene cpcA of filamentous fungus Aspergillus nidulans. Mol Biol Cell 12: 2846-2857.
-
(2001)
Mol Biol Cell
, vol.12
, pp. 2846-2857
-
-
Hoffmann, B.1
Valerius, O.2
Andermann, M.3
Braus, G.H.4
-
38
-
-
0028936210
-
The Saccharomyces cerevisiae Leu3 protein activates expression of GDH1, a key gene in nitrogen assimilation
-
Hu, Y., Cooper, T.G., and Kohlhaw, G.B. (1995) The Saccharomyces cerevisiae Leu3 protein activates expression of GDH1, a key gene in nitrogen assimilation. Mol Cell Biol 15: 52-57.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 52-57
-
-
Hu, Y.1
Cooper, T.G.2
Kohlhaw, G.B.3
-
39
-
-
0016517434
-
Studies on the role of the areA gene in the regulation of nitrogen catabolism in Aspergillus nidulans
-
Hynes, M.J. (1975) Studies on the role of the areA gene in the regulation of nitrogen catabolism in Aspergillus nidulans. Aust J Biol Sci 28: 301-313.
-
(1975)
Aust J Biol Sci
, vol.28
, pp. 301-313
-
-
Hynes, M.J.1
-
40
-
-
0023317190
-
Mutations that inactivate a yeast transcriptional regulatory protein cluster in an evolutionarily conserved DNA binding domain
-
Johnston, M., and Dover, J. (1987) Mutations that inactivate a yeast transcriptional regulatory protein cluster in an evolutionarily conserved DNA binding domain. Proc Natl Acad Sci USA 84: 2401-2405.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 2401-2405
-
-
Johnston, M.1
Dover, J.2
-
41
-
-
0025066572
-
Identification of an amino acid substitution in the benA, beta-tubulin gene of Aspergillus nidulans that confers thiabendazole resistance and benomyl supersensitivity
-
Jung, M.K., and Oakley, B.R. (1990) Identification of an amino acid substitution in the benA, beta-tubulin gene of Aspergillus nidulans that confers thiabendazole resistance and benomyl supersensitivity. Cell Motil Cytoskeleton 17: 87-94.
-
(1990)
Cell Motil Cytoskeleton
, vol.17
, pp. 87-94
-
-
Jung, M.K.1
Oakley, B.R.2
-
42
-
-
34248139757
-
The Hes gene family: repressors and oscillators that orchestrate embryogenesis
-
Kageyama, R., Ohtsuka, T., and Kobayashi, T. (2007) The Hes gene family: repressors and oscillators that orchestrate embryogenesis. Development 134: 1243-1251.
-
(2007)
Development
, vol.134
, pp. 1243-1251
-
-
Kageyama, R.1
Ohtsuka, T.2
Kobayashi, T.3
-
43
-
-
51649130774
-
Differential use of SCL/TAL-1 DNA-binding domain in developmental hematopoiesis
-
Kassouf, M.T., Chagraoui, H., Vyas, P., and Porcher, C. (2008) Differential use of SCL/TAL-1 DNA-binding domain in developmental hematopoiesis. Blood 112: 1056-1067.
-
(2008)
Blood
, vol.112
, pp. 1056-1067
-
-
Kassouf, M.T.1
Chagraoui, H.2
Vyas, P.3
Porcher, C.4
-
44
-
-
0015899509
-
NAD and NADP L-glutamate dehydrogenase activity and ammonium regulation in Aspergillus nidulans
-
Kinghorn, J.R., and Pateman, J.A. (1973) NAD and NADP L-glutamate dehydrogenase activity and ammonium regulation in Aspergillus nidulans. J Gen Microbiol 78: 39-46.
-
(1973)
J Gen Microbiol
, vol.78
, pp. 39-46
-
-
Kinghorn, J.R.1
Pateman, J.A.2
-
45
-
-
0016754250
-
Studies of partially repressed mutants at the tamA and areA loci in Aspergillus nidulans
-
Kinghorn, J.R., and Pateman, J.A. (1975a) Studies of partially repressed mutants at the tamA and areA loci in Aspergillus nidulans. Mol Gen Genet 140: 137-147.
-
(1975)
Mol Gen Genet
, vol.140
, pp. 137-147
-
-
Kinghorn, J.R.1
Pateman, J.A.2
-
46
-
-
0016635957
-
The structural gene for NADP L-glutamate dehydrogenase in Aspergillus nidulans
-
Kinghorn, J.R., and Pateman, J.A. (1975b) The structural gene for NADP L-glutamate dehydrogenase in Aspergillus nidulans. J Gen Microbiol 86: 294-300.
-
(1975)
J Gen Microbiol
, vol.86
, pp. 294-300
-
-
Kinghorn, J.R.1
Pateman, J.A.2
-
47
-
-
47049121925
-
Structural analysis of the recognition of the negative regulator NmrA and DNA by the zinc finger from the GATA-type transcription factor AreA
-
Kotaka, M., Johnson, C., Lamb, H.K., Hawkins, A.R., Ren, J., and Stammers, D.K. (2008) Structural analysis of the recognition of the negative regulator NmrA and DNA by the zinc finger from the GATA-type transcription factor AreA. J Mol Biol 381: 373-382.
-
(2008)
J Mol Biol
, vol.381
, pp. 373-382
-
-
Kotaka, M.1
Johnson, C.2
Lamb, H.K.3
Hawkins, A.R.4
Ren, J.5
Stammers, D.K.6
-
48
-
-
9344220480
-
Modulation of the ligand binding properties of the transcription repressor NmrA by GATA-containing DNA and site-directed mutagenesis
-
Lamb, H.K., Ren, J., Park, A., Johnson, C., Leslie, K., Cocklin, S., etal. (2004) Modulation of the ligand binding properties of the transcription repressor NmrA by GATA-containing DNA and site-directed mutagenesis. Protein Sci 13: 3127-3138.
-
(2004)
Protein Sci
, vol.13
, pp. 3127-3138
-
-
Lamb, H.K.1
Ren, J.2
Park, A.3
Johnson, C.4
Leslie, K.5
Cocklin, S.6
-
49
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., etal. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
-
50
-
-
0000856986
-
Isolation of DNA from fungal mycelia and single spores
-
In . Innis, M.A., Gelfand, D.H., Sninsky, J.S., and White, T.J. (eds). San Diego: Academic Press -.
-
Lee, S.B., and Taylor, J.W. (1990) Isolation of DNA from fungal mycelia and single spores. In PCR Protocols: A Guide to Methods and Applications. Innis, M.A., Gelfand, D.H., Sninsky, J.S., and White, T.J. (eds). San Diego: Academic Press, pp. 282-287.
-
(1990)
PCR Protocols: A Guide to Methods and Applications
, pp. 282-287
-
-
Lee, S.B.1
Taylor, J.W.2
-
51
-
-
77956530755
-
Evolution of transcription networks-lessons from yeasts
-
Li, H., and Johnson, A.D. (2010) Evolution of transcription networks-lessons from yeasts. Curr Biol 20: R746-R753.
-
(2010)
Curr Biol
, vol.20
-
-
Li, H.1
Johnson, A.D.2
-
52
-
-
33645769260
-
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
-
MacIsaac, K.D., Wang, T., Gordon, D.B., Gifford, D.K., Stormo, G.D., and Fraenkel, E. (2006) An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7: 113.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
MacIsaac, K.D.1
Wang, T.2
Gordon, D.B.3
Gifford, D.K.4
Stormo, G.D.5
Fraenkel, E.6
-
53
-
-
33749236250
-
A fungal family of transcriptional regulators: the zinc cluster proteins
-
MacPherson, S., Larochelle, M., and Turcotte, B. (2006) A fungal family of transcriptional regulators: the zinc cluster proteins. Microbiol Mol Biol Rev 70: 583-604.
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 583-604
-
-
MacPherson, S.1
Larochelle, M.2
Turcotte, B.3
-
54
-
-
32944471695
-
Differential expression of Aspergillus nidulans ammonium permease genes is regulated by GATA transcription factor AreA
-
Monahan, B.J., Askin, M.C., Hynes, M.J., and Davis, M.A. (2006) Differential expression of Aspergillus nidulans ammonium permease genes is regulated by GATA transcription factor AreA. Eukaryot Cell 5: 226-237.
-
(2006)
Eukaryot Cell
, vol.5
, pp. 226-237
-
-
Monahan, B.J.1
Askin, M.C.2
Hynes, M.J.3
Davis, M.A.4
-
55
-
-
0033813131
-
A defined sequence within the 3′ UTR of the areA transcript is sufficient to mediate nitrogen metabolite signalling via accelerated deadenylation
-
Morozov, I.Y., Martinez, M.G., Jones, M.G., and Caddick, M.X. (2000) A defined sequence within the 3′ UTR of the areA transcript is sufficient to mediate nitrogen metabolite signalling via accelerated deadenylation. Mol Microbiol 37: 1248-1257.
-
(2000)
Mol Microbiol
, vol.37
, pp. 1248-1257
-
-
Morozov, I.Y.1
Martinez, M.G.2
Jones, M.G.3
Caddick, M.X.4
-
56
-
-
0035723387
-
Characterization of nitrogen metabolite signalling in Aspergillus via the regulated degradation of areA mRNA
-
Morozov, I.Y., Galbis-Martinez, M., Jones, M.G., and Caddick, M.X. (2001) Characterization of nitrogen metabolite signalling in Aspergillus via the regulated degradation of areA mRNA. Mol Microbiol 42: 269-277.
-
(2001)
Mol Microbiol
, vol.42
, pp. 269-277
-
-
Morozov, I.Y.1
Galbis-Martinez, M.2
Jones, M.G.3
Caddick, M.X.4
-
57
-
-
0033559261
-
The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter
-
Muro-Pastor, M.I., Gonzalez, R., Strauss, J., Narendja, F., and Scazzocchio, C. (1999) The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter. EMBO J 18: 1584-1597.
-
(1999)
EMBO J
, vol.18
, pp. 1584-1597
-
-
Muro-Pastor, M.I.1
Gonzalez, R.2
Strauss, J.3
Narendja, F.4
Scazzocchio, C.5
-
58
-
-
0036231908
-
Nitrate and the GATA factor AreA are necessary for in vivo binding of NirA, the pathway-specific transcriptional activator of Aspergillus nidulans
-
Narendja, F., Goller, S.P., Wolschek, M., and Strauss, J. (2002) Nitrate and the GATA factor AreA are necessary for in vivo binding of NirA, the pathway-specific transcriptional activator of Aspergillus nidulans. Mol Microbiol 44: 573-583.
-
(2002)
Mol Microbiol
, vol.44
, pp. 573-583
-
-
Narendja, F.1
Goller, S.P.2
Wolschek, M.3
Strauss, J.4
-
59
-
-
33645223703
-
A versatile and efficient gene-targeting system for Aspergillus nidulans
-
Nayak, T., Szewczyk, E., Oakley, C.E., Osmani, A., Ukil, L., Murray, S.L., etal. (2006) A versatile and efficient gene-targeting system for Aspergillus nidulans. Genetics 172: 1557-1566.
-
(2006)
Genetics
, vol.172
, pp. 1557-1566
-
-
Nayak, T.1
Szewczyk, E.2
Oakley, C.E.3
Osmani, A.4
Ukil, L.5
Murray, S.L.6
-
60
-
-
53049108595
-
Hairy2 functions through both DNA-binding and non DNA-binding mechanisms at the neural plate border in Xenopus
-
Nichane, M., Ren, X., Souopgui, J., and Bellefroid, E.J. (2008) Hairy2 functions through both DNA-binding and non DNA-binding mechanisms at the neural plate border in Xenopus. Dev Biol 322: 368-380.
-
(2008)
Dev Biol
, vol.322
, pp. 368-380
-
-
Nichane, M.1
Ren, X.2
Souopgui, J.3
Bellefroid, E.J.4
-
61
-
-
0004454148
-
Structure and function of the Zn(II) binding site within the DNA-binding domain of the GAL4 transcription factor
-
Pan, T., and Coleman, J.E. (1989) Structure and function of the Zn(II) binding site within the DNA-binding domain of the GAL4 transcription factor. Proc Natl Acad Sci USA 86: 3145-3149.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 3145-3149
-
-
Pan, T.1
Coleman, J.E.2
-
62
-
-
0025922012
-
Sequential assignments of the 1H NMR resonances of Zn(II)2 and 113Cd(II)2 derivatives of the DNA-binding domain of the GAL4 transcription factor reveal a novel structural motif for specific DNA recognition
-
Pan, T., and Coleman, J.E. (1991) Sequential assignments of the 1H NMR resonances of Zn(II)2 and 113Cd(II)2 derivatives of the DNA-binding domain of the GAL4 transcription factor reveal a novel structural motif for specific DNA recognition. Biochemistry 30: 4212-4222.
-
(1991)
Biochemistry
, vol.30
, pp. 4212-4222
-
-
Pan, T.1
Coleman, J.E.2
-
63
-
-
0014637927
-
Regulation of synthesis of glutamate dehydrogenase and glutamine synthetase in micro-organisms
-
Pateman, J.A. (1969) Regulation of synthesis of glutamate dehydrogenase and glutamine synthetase in micro-organisms. Biochem J 115: 769-775.
-
(1969)
Biochem J
, vol.115
, pp. 769-775
-
-
Pateman, J.A.1
-
64
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
65
-
-
0029950890
-
Nitrogen metabolite signalling involves the C-terminus and the GATA domain of the Aspergillus transcription factor AREA and the 3′ untranslated region of its mRNA
-
Platt, A., Langdon, T., Arst, H.N., Jr, Kirk, D., Tollervey, D., Sanchez, J.M., and Caddick, M.X. (1996a) Nitrogen metabolite signalling involves the C-terminus and the GATA domain of the Aspergillus transcription factor AREA and the 3′ untranslated region of its mRNA. EMBO J 15: 2791-2801.
-
(1996)
EMBO J
, vol.15
, pp. 2791-2801
-
-
Platt, A.1
Langdon, T.2
Arst Jr., H.N.3
Kirk, D.4
Tollervey, D.5
Sanchez, J.M.6
Caddick, M.X.7
-
66
-
-
0030031925
-
Mutational analysis of the C-terminal region of AREA, the transcription factor mediating nitrogen metabolite repression in Aspergillus nidulans
-
Platt, A., Ravagnani, A., Arst, H., Jr, Kirk, D., Langdon, T., and Caddick, M.X. (1996b) Mutational analysis of the C-terminal region of AREA, the transcription factor mediating nitrogen metabolite repression in Aspergillus nidulans. Mol Gen Genet 250: 106-114.
-
(1996)
Mol Gen Genet
, vol.250
, pp. 106-114
-
-
Platt, A.1
Ravagnani, A.2
Arst Jr., H.3
Kirk, D.4
Langdon, T.5
Caddick, M.X.6
-
67
-
-
11244275558
-
TamA interacts with LeuB, the homologue of Saccharomyces cerevisiae Leu3p, to regulate gdhA expression in Aspergillus nidulans
-
Polotnianka, R., Monahan, B.J., Hynes, M.J., and Davis, M.A. (2004) TamA interacts with LeuB, the homologue of Saccharomyces cerevisiae Leu3p, to regulate gdhA expression in Aspergillus nidulans. Mol Genet Genomics 272: 452-459.
-
(2004)
Mol Genet Genomics
, vol.272
, pp. 452-459
-
-
Polotnianka, R.1
Monahan, B.J.2
Hynes, M.J.3
Davis, M.A.4
-
68
-
-
0030982626
-
Subtle hydrophobic interactions between the seventh residue of the zinc finger loop and the first base of an HGATAR sequence determine promoter-specific recognition by the Aspergillus nidulans GATA factor AreA
-
Ravagnani, A., Gorfinkiel, L., Langdon, T., Diallinas, G., Adjadj, E., Demais, S., etal. (1997) Subtle hydrophobic interactions between the seventh residue of the zinc finger loop and the first base of an HGATAR sequence determine promoter-specific recognition by the Aspergillus nidulans GATA factor AreA. EMBO J 16: 3974-3986.
-
(1997)
EMBO J
, vol.16
, pp. 3974-3986
-
-
Ravagnani, A.1
Gorfinkiel, L.2
Langdon, T.3
Diallinas, G.4
Adjadj, E.5
Demais, S.6
-
69
-
-
0036289261
-
GDH1 expression is regulated by GLN3, GCN4, and HAP4 under respiratory growth
-
Riego, L., Avendano, A., DeLuna, A., Rodriguez, E., and Gonzalez, A. (2002) GDH1 expression is regulated by GLN3, GCN4, and HAP4 under respiratory growth. Biochem Biophys Res Commun 293: 79-85.
-
(2002)
Biochem Biophys Res Commun
, vol.293
, pp. 79-85
-
-
Riego, L.1
Avendano, A.2
DeLuna, A.3
Rodriguez, E.4
Gonzalez, A.5
-
71
-
-
44949231424
-
Analyzing real-time PCR data by the comparative C(T) method
-
Schmittgen, T.D., and Livak, K.J. (2008) Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc 3: 1101-1108.
-
(2008)
Nat Protoc
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
72
-
-
0034613178
-
Roles of the Dal82p domains in allophanate/oxalurate-dependent gene expression in Saccharomyces cerevisiae
-
Scott, S., Abul-Hamd, A.T., and Cooper, T.G. (2000) Roles of the Dal82p domains in allophanate/oxalurate-dependent gene expression in Saccharomyces cerevisiae. J Biol Chem 275: 30886-30893.
-
(2000)
J Biol Chem
, vol.275
, pp. 30886-30893
-
-
Scott, S.1
Abul-Hamd, A.T.2
Cooper, T.G.3
-
73
-
-
0032830140
-
The TamA protein fused to a DNA-binding domain can recruit AreA, the major nitrogen regulatory protein, to activate gene expression in Aspergillus nidulans
-
Small, A.J., Hynes, M.J., and Davis, M.A. (1999) The TamA protein fused to a DNA-binding domain can recruit AreA, the major nitrogen regulatory protein, to activate gene expression in Aspergillus nidulans. Genetics 153: 95-105.
-
(1999)
Genetics
, vol.153
, pp. 95-105
-
-
Small, A.J.1
Hynes, M.J.2
Davis, M.A.3
-
74
-
-
0034887782
-
Functional analysis of TamA, a coactivator of nitrogen-regulated gene expression in Aspergillus nidulans
-
Small, A.J., Todd, R.B., Zanker, M.C., Delimitrou, S., Hynes, M.J., and Davis, M.A. (2001) Functional analysis of TamA, a coactivator of nitrogen-regulated gene expression in Aspergillus nidulans. Mol Genet Genomics 265: 636-646.
-
(2001)
Mol Genet Genomics
, vol.265
, pp. 636-646
-
-
Small, A.J.1
Todd, R.B.2
Zanker, M.C.3
Delimitrou, S.4
Hynes, M.J.5
Davis, M.A.6
-
75
-
-
84861341507
-
Reprogramming of carbon metabolism by the transcriptional activators AcuK and AcuM in Aspergillus nidulans
-
Suzuki, Y., Murray, S.L., Wong, K.H., Davis, M.A., and Hynes, M.J. (2012) Reprogramming of carbon metabolism by the transcriptional activators AcuK and AcuM in Aspergillus nidulans. Mol Microbiol 84: 942-964.
-
(2012)
Mol Microbiol
, vol.84
, pp. 942-964
-
-
Suzuki, Y.1
Murray, S.L.2
Wong, K.H.3
Davis, M.A.4
Hynes, M.J.5
-
76
-
-
79960136767
-
Yeast zinc cluster proteins Dal81 and Uga3 cooperate by targeting common coactivators for transcriptional activation of gamma-aminobutyrate responsive genes
-
Sylvain, M.A., Liang, X.B., Hellauer, K., and Turcotte, B. (2011) Yeast zinc cluster proteins Dal81 and Uga3 cooperate by targeting common coactivators for transcriptional activation of gamma-aminobutyrate responsive genes. Genetics 188: 523-534.
-
(2011)
Genetics
, vol.188
, pp. 523-534
-
-
Sylvain, M.A.1
Liang, X.B.2
Hellauer, K.3
Turcotte, B.4
-
77
-
-
0028900404
-
Cis- and trans-acting elements determining induction of the genes of the gamma-aminobutyrate (GABA) utilization pathway in Saccharomyces cerevisiae
-
Talibi, D., Grenson, M., and Andre, B. (1995) Cis- and trans-acting elements determining induction of the genes of the gamma-aminobutyrate (GABA) utilization pathway in Saccharomyces cerevisiae. Nucleic Acids Res 23: 550-557.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 550-557
-
-
Talibi, D.1
Grenson, M.2
Andre, B.3
-
78
-
-
0031164761
-
Evolution of a fungal regulatory gene family: the Zn(II)2Cys6 binuclear cluster DNA binding motif
-
Todd, R.B., and Andrianopoulos, A. (1997) Evolution of a fungal regulatory gene family: the Zn(II)2Cys6 binuclear cluster DNA binding motif. Fungal Genet Biol 21: 388-405.
-
(1997)
Fungal Genet Biol
, vol.21
, pp. 388-405
-
-
Todd, R.B.1
Andrianopoulos, A.2
-
79
-
-
0032055886
-
FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences
-
Todd, R.B., Andrianopoulos, A., Davis, M.A., and Hynes, M.J. (1998) FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences. EMBO J 17: 2042-2054.
-
(1998)
EMBO J
, vol.17
, pp. 2042-2054
-
-
Todd, R.B.1
Andrianopoulos, A.2
Davis, M.A.3
Hynes, M.J.4
-
80
-
-
26944477743
-
Nuclear accumulation of the GATA factor AreA in response to complete nitrogen starvation by regulation of nuclear export
-
Todd, R.B., Fraser, J.A., Wong, K.H., Davis, M.A., and Hynes, M.J. (2005) Nuclear accumulation of the GATA factor AreA in response to complete nitrogen starvation by regulation of nuclear export. Eukaryot Cell 4: 1646-1653.
-
(2005)
Eukaryot Cell
, vol.4
, pp. 1646-1653
-
-
Todd, R.B.1
Fraser, J.A.2
Wong, K.H.3
Davis, M.A.4
Hynes, M.J.5
-
81
-
-
34248551089
-
Genetic manipulation of Aspergillus nidulans: meiotic progeny for genetic analysis and strain construction
-
Todd, R.B., Davis, M.A., and Hynes, M.J. (2007) Genetic manipulation of Aspergillus nidulans: meiotic progeny for genetic analysis and strain construction. Nat Protoc 2: 811-821.
-
(2007)
Nat Protoc
, vol.2
, pp. 811-821
-
-
Todd, R.B.1
Davis, M.A.2
Hynes, M.J.3
-
82
-
-
84897404461
-
Prevalence of transcription factors in ascomycete and basidiomycete fungi
-
Todd, R.B., Zhou, M., Ohm, R.A., Leeggangers, H.A.C.F., Visser, L., and de Vries, R.P. (2014) Prevalence of transcription factors in ascomycete and basidiomycete fungi. BMC Genomics 15: 214.
-
(2014)
BMC Genomics
, vol.15
, pp. 214
-
-
Todd, R.B.1
Zhou, M.2
Ohm, R.A.3
Leeggangers, H.A.C.F.4
Visser, L.5
de Vries, R.P.6
-
83
-
-
33745195271
-
Yeast Gal4: a transcriptional paradigm revisited
-
Traven, A., Jelicic, B., and Sopta, M. (2006) Yeast Gal4: a transcriptional paradigm revisited. EMBO Rep 7: 496-499.
-
(2006)
EMBO Rep
, vol.7
, pp. 496-499
-
-
Traven, A.1
Jelicic, B.2
Sopta, M.3
-
84
-
-
0031664345
-
Mutational analysis of AREA, a transcriptional activator mediating nitrogen metabolite repression in Aspergillus nidulans and a member of the 'streetwise' GATA family of transcription factors
-
Wilson, R.A., and Arst, H.N., Jr (1998) Mutational analysis of AREA, a transcriptional activator mediating nitrogen metabolite repression in Aspergillus nidulans and a member of the 'streetwise' GATA family of transcription factors. Microbiol Mol Biol Rev 62: 586-596.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 586-596
-
-
Wilson, R.A.1
Arst Jr., H.N.2
-
85
-
-
0026055102
-
nit-4, a pathway-specific regulatory gene of Neurospora crassa, encodes a protein with a putative binuclear zinc DNA-binding domain
-
Yuan, G.F., Fu, Y.H., and Marzluf, G.A. (1991) nit-4, a pathway-specific regulatory gene of Neurospora crassa, encodes a protein with a putative binuclear zinc DNA-binding domain. Mol Cell Biol 11: 5735-5745.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 5735-5745
-
-
Yuan, G.F.1
Fu, Y.H.2
Marzluf, G.A.3
|