Genetic diversity assessed by SSR markers and chemotyping of Fusarium culmorum causal agent of foot and root rot of wheat collected from two different fields in Tunisia

European Journal of Plant Pathology

Volumn 139, Issue 3, 2014, Pages 481-495

  Rebib, Hanene ^a,c   Bouraoui, Hanene ^a   Rouaissi, Mustapha ^b   Brygoo, Yves ^c   Boudabbous, Abdellatif ^a   Hajlaoui, M R ^b   Sadfi Zouaoui, Najla ^a  

^a FACULTÉ DES SCIENCES DE TUNIS   (Tunisia)

^b UNIVERSITY OF CARTHAGE   (Tunisia)

^c INRA Institut National de la Recherche Agronomique   (France)

Author keywords

Chemotype; Foot and root rot; Fusarium culmorum; Genetic diversity; Mating type; Simple sequence repeat

Indexed keywords

GENETIC MARKER; GENETIC VARIATION; MOLECULAR ANALYSIS; PATHOGENICITY; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE; ROOT ROT; WHEAT;

TUNISIA;

FUSARIUM; FUSARIUM CULMORUM; TRITICUM AESTIVUM;

EID: 84901975817     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-014-0405-x     Document Type: Article

References (67)

1. Agapow, P. M., & Burt, A. (2001). Indices of multilocus linkage disequilibrium. Molecular Ecology Notes, 1, 101-102.
2. Arie, T., Kaneko, I., Yoshida, T., Noguchi, M., Nomura, Y., & Yamaguchi, I. (2000). Mating-type genes from asexual phytopathogenic ascomycetes Fusarium oxysporum and Alternaria alternate. Molecular Plant Microbe, 13, 1330-1339.
3. Bakan, B., Pinson, L., Cahagnier, B., Melcion, D., Sémon, E., & Richard-Molard, D. (2001). Toxigenic potential of Fusarium culmorum strains isolated from French wheat. Food Additives and Contaminants, 18, 998-1003.
4. Bakan, B., Giraud-Delville, C., Pinson, L., Richard-Molard, D., Fournier, E., & Brygoo, Y. (2002). Identification par PCR of Fusarium culmorum strains producing large and smoll amounts of deoxynivalenol. Applied and Environmental Micrbiology, 68, 5472-5479.
5. Bayraktar, H., Dolar, F. S., & Maden, S. (2007). Use of RAPD and ISSR markers in detection of genetic variation and population structure among Fusarium oxysporum f. sp. ciceris isolates on chickpea in Turkey. Journal of Phytopathology, 156, 146-154.
6. Blandino, M., Haidukowski, M., Pascale, M., Plizzari, L., Scudellari, D., & Reyneri, A. (2012). Integrated strategies for the control of Fusarium head blight and deoxynivalenol contamination in winter wheat. Field Crops Research, 133, 139-149.
7. Brygoo, Y., & Gautier, A. (2007). Molecular polymorphism of Fusarium strains isolated from wheat and corn ears in France Collects 2003 and 2004. Symposium on Mycotoxines fusariennes des cereals - Arcachon - 11-13 Sept 2007.
8. Burgess, L. W., Summerell, B. A., Bullock, S., Gott, K. P., & Backhouse, D. (1994). Laboratory manual for fusarium research (3rd ed.). Australia: University of Sydney.
9. Çepni, E., Tunali, B., & Gürel, F. (2012). Genetic diversity and mating types of Fusarium culmorum and Fusarium graminearum originating from different agro-ecological regions in Turkey. Journal of Basic Microbiology, 52, 1-9.
10. Clear, R. M., Patrick, S. K., & Gaba, D. (2000). Prevelence of fungi and fusariotoxins on barley seed from western Canada, 1995 to 1997. Canadian Journal of Plant Pathology, 22, 44-50.
11. Corazza, L., Balmas, V., Santori, A., Vitale, S., Luongo, M., & Maccaroni, M. (2002). Head blight and foot rot of wheat in Italy. Petria, 12, 25-36.
12. Covarelli, L., Beccaria, G., Steedb, A., & Nicholson, P. (2012). Colonization of soft wheat following infection of the stem base by Fusarium culmorum and translocation of deoxynivalenol to the head. Plant Pathology, 61, 1121-1129.
13. De Nijs, M., Larson, J. S., Gams, W., Rombouts, F. M., Wernas, K., Thrane, U., et al. (1997). Variation in random amplified polymorphic DNA patterns and secondary metabolic profiles within Fusarium species from cereals from various parts of The Netherlands. Food Microbiology, 14, 449-457.
14. Demeke, T., Clear, R. M., Patrick, S. K., & Gaba, D. (2005). Species-specific PCR-based assays for the detection of Fusarium species and a comparison with the whole seed agar plate method and trichothecene analysis. International Journal of Food Microbiology, 103, 271-284.
15. Desjardin, A. E., Hohn, T. M., & McCormick, S. P. (1993). Trichothecene biosynthesis in Fusarium species: chemistry, genetics, and significance. Microbiological Review, 57, 595-604.
16. Fakhfakh, M. M., Yahyaoui, A., Rezgui, S., Elias, E. M., & Daaloul, A. (2011). Identification and pathogenicity assessment of Fusarium spp. sampled from durum wheat fields in Tunisia. African Journal of Biotechnology, 10(34), 6529-6539.
17. Gargouri, S., Hajlaoui, M. R., Guramech, A., & Marrakchi, M. (2001). Identification des espèces fongiques associées à la pourriture du pied du blé et leur répartition selon les étages bioclimatiques. EPPO/OEPP Bulletin, 31, 499-503.
18. Gargouri, S., Bernier, L., Hajlaoui, M. R., & Marrakchi, M. (2003). Genetic variability and population structure of the wheat foot rot fungus, Fusarium culmorum, in Tunisia. European Journal of Plant Pathology, 109, 807-815.
19. Gargouri, S., Mtat, I., Kammoun, L. G., Zid, M., & Hajlaoui, M. R. (2011). Molecular Genetic Diversity in Populations of Fusarium pseudograminearum from Tunisia. Journal of Phytopathology, 159, 306-313.
20. Gerlach, W., & Nirenberg, H. (1982). The Genus Fusarium-a Pictorial Atlas. Mitteilungen aus der Biologischen Bundesanstalt für Land- u. Forstwirtschaft, 209, 1-406.
21. Giraud, T., Fournier, E., Vautrin, D., Solignac, M., Vercken, E., Bakan, B., et al. (2002). Isolation of eight polymorphic microsatellite loci using enrichment protocol in the phytopathogenic fungus Fusarium culmorum. Molecular Ecology Notes, 2, 121-123.
22. Goudet, J. (1995). FSTAT Version 1. 2: a computer program to calculate F-statistics. (Current version (February 2002) is 2. 9. 3. 2). Journal of Heredity, 86, 485-486.
23. Guo, X. W., Fernando, W. G. D., & Seow-Brock, H. Y. (2008). Population structure, chemotype diversity, and potential chemotype shifting of Fusarium graminearum in wheat fields of Manitoba. Plant Disease, 92, 756-762.
24. Hillis, D. M., & Bull, J. J. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology, 42, 182-192.
25. Irzykowska, L., Bocianowski, J., & Baturo-Cieśniewska, A. (2013). Association of mating-type with mycelium growth rate and genetic variability of Fusarium culmorum. Central European Journal of Biology, 8(7), 701-711.
26. Jennings, P., Coates, M. E., Turner, J. A., Chandler, E. A., & Nicholson, P. (2004). Determination of deoxynivalenol and nivalenol chemotypes of Fusarium culmorum isolates from England and Wales by PCR assay. Plant Pathology, 53, 182-190.
27. Kammoun, L. G., Gargouri, S., Barreau, C., Richard-Forget, F., & Hajlaoui, M. R. (2010). Trichothecene chemotypes of Fusarium culmorum infecting wheat in Tunisia. International Journal of Food Microbiology, 140, 84-89.
28. Kerényi, Z., Moretti, A., Waalwijk, C., Oláh, B., & Hornok, L. (2004). Mating type sequences in asexually reproducing Fusarium species. Applied and Environmental Microbiology, 70, 4419-4423.
29. Kistler, H. C., & Miao, V. P. M. (1992). New models of genetic change in filamentous fungi. Annual Review Phytopathology, 30, 131-152.
30. Leslie, J. F., & Summerell, B. A. (2006). The Fusarium laboratory manual (p. 388). Iowa: Blackwell publishing.
31. McDermott, J. M., & McDonald, B. A. (1993). Gene flow in plant pathosystems. Annual Review of Phytopathology, 31, 353-373.
32. McDonald, B. A., & McDermott, J. M. (1993). Population genetics of plant pathogenic fungi. Bioscience, 43, 311-319.
33. McDonald, B. A., & Linde, C. (2002). The population genetics of plant pathogens and breeding for durable resistance. Euphytica, 124, 163-180.
34. Miedaner, T., Schlling, A. G., & Geiger, H. H. (2001). Molecular genetic diversity and variation for aggressiveness in populations of Fusarium graminearum and F. culmorum sampled from wheat fields in different countries. Journal of Phytopathology, 149, 641-648.
35. Miedaner, T., Cumagun, C. J. R., & Chakraborty, S. (2008). Population genetics of three important head blight pathogens Fusarium graminearum. F. pseudograminearum and F. culmorum. Journal of Phytopathology, 156, 129-139.
36. Miedaner, T., Caixeta, F., & Talas, F. (2013). Head-blighting populations of Fusarium culmorum from Germany, Russia, and Syria analyzed by microsatellite markers show recombining structure. European Journal of Plant Pathology, 137(4), 743-752.
37. Mirocha, C. J., Xie, W., Xu, Y., Wilcoxson, R. D., Woodward, R. P., Etebarian, R. H., et al. (1994). Production of trichothecene mycotoxins by Fusarium graminearum and Fusarium culmorum on barley and wheat. Mycopathologia, 128, 19-23.
38. Mishra, P. K., Fox, R. T. V., & Culham, A. (2002). Restriction analysis of PCR amplified nrDNA regions revealed intraspecific variation within populations of Fusarium culmorum. FEMS Microbiology Letters, 215, 291-296.
39. Mishra, P. K., Fox, R. T. V., & Cutham, A. (2003). Inter-simple sequence repeat and aggressiveness analyses revealed high genetic diversity, recombination and long range dispersal in Fusarium culmorum. Annals of Applied Biology, 143, 291-301.
40. Nei, M. (1973). Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences of the United States of America, 70, 3321-3323.
41. Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583-590.
42. Nei, M., & Li, W. H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of the United States of America, 76, 5269-5273.
43. Nicholson, P., Jenkinson, P., Rezanoor, H. N., & Parry, D. W. (1993). Restriction fragment length analysis of variation in Fusarium species causing ear blight of cereals. Plant Pathology, 42, 905-914.
44. Nicholson, P., Simpson, D. R., & Weston, G. (1998). Detection and quantification of Fusarium culmorum and Fusarium graminearum in cereals using PCR assays. Physiological and Molecular Plant Pathology, 53, 17-37.
45. Obanor, F., Erginbas-Orakci, G., Tunali, B., Nicol, J. M., & Chakraborty, S. (2010). Fusarium culmorum is a single phylogenetic species based on multilocus sequence analysis. Fungal Biology, 114, 753-765.
46. Ouellet, T., & Seifert, K. A. (1993). Genetic characterization of Fusarium graminearum strains using RAPD and PCR amplification. Phytopathology, 83, 1003-1007.
47. Pancaldi, D., Tonti, S., Prodi, A., Salomoni, D., Dal Prà, M., Nipoti, P., et al. (2010). Survey of the main causal agents of fusarium head blight of durum wheat around Bologna, northern Italy. Phytopathologia Mediterranea, 49, 258-266.
48. Parry, D. W., Jenkinsen, P., & Mcleod, L. (1995). Fusarium ear blight (scab) in small grain cereals - a review. Plant Patholology, 44, 207-238.
49. Polley, R. W., & Turner, J. A. (1995). Surveys of stem base diseases and Fusarium ear diseases in winter wheat in England, Wales and Scotland 1989-1990. Annals of Applied Biology, 126, 49-59.
50. Qu, B., Li, H. P., Xu, Y. B., Huang, T., & Wu, A. B. (2008). Geographic distribution and genetic diversity of Fusarium graminearum and F. asiaticum on wheat spikes throughout China. Plant Pathology, 57, 15-24.
51. Quarta, A., Mita, G., Haidukowski, M., Santino, A., Mulè, G., & Visconti, A. (2005). Assessment of trichothecene chemotypes of Fusarium culmorum occurring in Europe. Food Additives and Contaminants, 22, 309-315.
52. Ribichich, K. F., Lopez, S. E., & Vegetti, A. C. (2000). Histo-pathological spikelet changes produced by Fusarium graminearum in susceptible and resistant wheat cultivars. Plant Disease, 84(7), 794-802.
53. Scherm, B., Orrù, M., Balmas, V., Spanu, F., Azara, E., Delogu, G., et al. (2011). Altered trichothecene biosynthesis in TRI6- silenced transformants of Fusarium culmorum influences the severity of crown and foot rot on durum wheat seedlings. Molecular Plant Pathology, 12, 759-771.
54. Scherm, B., Balmas, V., Spanu, F., Pani, G., Delogu, G., Pasquali, M., et al. (2013). Fusarium culmorum: causal agent of foot and root rot and head blight on wheat. Molecular Plant Pathology, 14, 323-341.
55. Schilling, A. G., Moller, E. M., & Geiger, H. H. (1996). Polymerase chain reaction-based assays for species-specific detection of Fusarium culmorum. Fusarium graminearum and F. avenaceum. Phytopathology, 86, 515-522.
56. Talas, F., Parzies, H. K., & Miedaner, T. (2011). Diversity in genetic structure and chemotype composition of Fusarium graminearum sensu stricto populations causing wheat head blight in individual fields in Germany. European Journal of Plant Pathology, 131, 39-48.
57. Tóth, B., Mesterhazy, A., Nicholson, P., Teren, J., & Varga, J. (2004). Mycotoxin production and molecular variability of European and American isolates Fusarium culmorum. European Journal of Plant Pathology, 110, 587-599.
58. van de Peer, Y., & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Computer Applications in the Biosciences, 10, 569-570.
59. Vogelgsang, S., Widmer, F., Jenny, E., & Enkerli, J. (2009). Characterisation of novel Fusarium graminearum microsatellite markers in different Fusarium species from various countries. European Journal of Plant Pathology, 123, 477-482.
60. Waalwijik, C., Mendes, O., Verstappen, E. C. P., de Waard, M. A., & Kema, G. H. J. (2002). Isolation and characterization of the mating type idiomorphs from the wheat Septoria leaf blotch fungus Mycosphaerella graminicola. Fungal Genetic Biology, 35, 277-286.
61. Weir, B. S., & Cockerham, C. C. (1984). Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
62. Wiese, M. V. (1987). Compendium of wheat diseases (2nd ed.). St. Paul: American Phytopathological Society.
63. Withanage, G. S. K., Murata, H., Koyana, T., & Ishiwata, I. (2001). Agonistic and antagonistic effects of zearalenone, an etrogenic mycotoxin, on SKN, HHUA, and HepG2 human cancer cell lines. Veterinary and Human Toxicology, 43, 6-10.
64. Xu, X. M., Parry, D. W., Nicholson, P., Thomsett, M. A., Simpson, D., Edwards, S. G., et al. (2008). Within-field variability of Fusarium head blight pathogens and their associated mycotoxins. European Journal of Plant Pathology, 120, 21-34.
65. Yeh, F. C., Yang, R. C., & Boyle, T. (1999). Popgene version 1. 32 Microsoft Windows-based freeware for population genetic analysis. Quick User Guide Center for International Forestry Research. Edmonton: University of Alberta.
66. Yörük, E., & Albayrak, G. (2012). Chemotyping of Fusarium graminearum and F. culmorum isolates from Turkey by PCR assay. Mycopathologia, 173, 53-61.
67. Zhan, J., Kema, G., Waalwijk, C., & McDonald, B. (2002). Distribution of mating type alleles in the wheat pathogen Mycosphaerella graminicola over spatial scales from lesions to continents. Fungal Genetics and Biology, 36, 128-136.