Use of RAPD and ISSR markers in detection of genetic variation and population structure among Fusarium oxysporum f. sp. ciceris isolates on chickpea in Turkey

Journal of Phytopathology

Volumn 156, Issue 3, 2008, Pages 146-154

  Bayraktar, H ^a   Dolar, F S ^a   Maden, S ^a  

^a ANKARA UNIVERSITY   (Turkey)

Author keywords

Chickpea; Fusarium wilt; Inter simple sequence repeat; Intraspecific variation; RAPD

Indexed keywords

CLUSTER ANALYSIS; DATA SET; DETECTION METHOD; EMERGENCE; EVOLUTIONARY BIOLOGY; FUNGUS; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC MARKER; LEGUME; PATHOGENICITY; POLYMORPHISM; POPULATION STRUCTURE; VARIANCE ANALYSIS; WILT;

EURASIA; TURKEY;

CICER ARIETINUM; FUSARIUM; FUSARIUM OXYSPORUM; FUSARIUM OXYSPORUM F. SP. CICERIS;

EID: 38849186659     PISSN: 09311785     EISSN: 14390434     Source Type: Journal    
DOI: 10.1111/j.1439-0434.2007.01319.x     Document Type: Article

References (45)

1. Anonymous (2007) Food and Agriculture Organization of the United Nations, FAO http://www.fao.org/ (accessed on 10 June 2007).
2. Balmas V, Scherm B, Primo PD, Rau D, Marcello A, Migheli Q 2005) Molecular characterization of vegetative compatibility groups in Fusarium oxysporum f. sp. radicis-lycopersici and f. sp. lycopersici by random amplification of polymorphic DNA and microsatellite-primed PCR. Eur J Plant Pathol 111 : 1 8.
3. Barve MP, Haware MP, Sainani MN, Ranjekar PK, Gupta VS 2001) Potential of microsatellites to distinguish four races of Fusarium oxysporum f. sp. ciceri prevalent in India. Theor Appl Genet 102 : 138 147.
4. Bentley S, Pegg KG, Dale JL 1994) Optimization of RAPD-fingerprinting 1 to analyze genetic variation within populations of Fusarium oxysporum f. sp. cubense. J Phytopathol 142 : 64 78.
5. Bornet B, Branchard M 2001) Nonanchored inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Mol Biol Rep 19 : 209 215.
6. Dolar FS 1997) Determination of the races of Fusarium oxysporum f. sp. ciceris in Ankara province, Turkey. J Turk Phytopath 26 : 11 15.
7. Excoffier L, Smouse P, Quattro J 1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131 : 479 491.
8. Excoffier L, Laval G, Schneider S. Arlequin ver 3.0: An Integrated Software Package for Population Genetics Data Analysis. Switzerland, University of Berne, 2005.
9. Gargouri S, Bernier L, Hajlaoui MR, Marrakchi M 2003) Genetic variability and population structure of the wheat foot rot fungus, Fusarium culmorum, in Tunisia. Eur J Plant Pathol 109 : 807 815.
10. Gordon TR, Martyn RD 1997) The evolutionary biology of Fusarium oxysporum. Annu Rev Phytopathol 35 : 111 128.
11. Grajal-Martin MJ, Simon CJ, Muehlbauer FJ 1993) Use of random amplified polymorphic DNA (RAPD) to characterize race 2 of Fusarium oxysporum f. sp. pisi. Phytopathology 83 : 612 614.
12. Halila MH, Strange RN 1996) Identification of the causal agent of wilt of chickpea in Tunisia as Fusarium oxysporum f. sp. ciceris race 0. Phytopathol Mediterr 35 : 67 74.
13. Hantula J, Lilja A, Nuorteva H, Parikka P, Werres S 2000) Pathogenicity, morphology and genetic variation of Phytophthora cactorum from strawberry, apple, rhododendron and silver birch. Mycol Res 104 : 1062 1068.
14. Haware MP, Nene YL 1982) Races of Fusarium oxysporum f. sp. ciceri. Plant Dis 66 : 809 810.
15. Haware MP, Nene YL, Natarajan M 1996) Survival of Fusarium oxysporum f. sp. ciceri in soil absence of chickpea. Phytopathol Mediterr 35 : 9 12.
16. Jimenez-Diaz RM, Alcala-Jimenez AR, Hervas A, Trapero-Casas JL. Pathogenic variability and host resistance in the Fusarium oxysporum f. sp. ciceris/Cicer arietinum pathosystem. In : Arseniuk E, Goral T (eds Fusarium Mycotoxins, Taxonomy, Pathogenicity and Host Resistance. Proceedings of the 3rd European Seminar. Radzikov, Poland, Plant Breeding and Acclimatization Institute, 1993, pp. 87 94.
17. Jimenez-Gasco M, Perez-Artes E, Jimenez-Diaz RM 2001) Identification of pathogenic races 0, 1 B/C, 5, and 6 of Fusarium oxysporum f. sp. ciceris with random amplified polymorphic DNA (RAPD). Eur J Plant Pathol 107 : 237 248.
18. Jimenez-Gasco M, Milgroom MG, Jimenez-Diaz RM 2002) Gene genealogies support Fusarium oxysporum f. sp. ciceris as a monophyletic group. Plant Pathol 51 : 72 77.
19. Kaiser WJ, Alcala-Jimenaz AR, Hervas-Vargas A, Trapero-Casas JL, Jimenaz-Diaz RM 1994) Screening of wild Cicer species for resistance to race 0 and 5 of Fusarium oxysporum f. sp. ciceris. Plant Dis 78 : 962 967.
20. Kalc Wright GF, Guest DI, Wimalajeewa DLS, Van Heeswijck R 1996) Characterisation of Fusarium oxysporum isolated from carnation based on pathogenicity, vegetative compatibility and random amplified polymorphic DNA (RAPD) assay. Eur J Plant Pathol 102 : 451 457.
21. Kelly A, Alcala-Jimenez AR, Bainbridge BW, Heale JB, Perez-Artes E, Jimenez-Diaz RM 1994) Use of genetic fingerprinting and random amplified polymorphic DNA to characterize pathotypes of Fusarium oxysporum f. sp. ciceris infecting chickpea. Phytopathology 84 : 1293 1298.
22. Khalil MS, Abdel-Sattar MA, Aly IN, Abd-Elsalam KA, Verreet JA 2003) Genetic affinities of Fusarium spp. and their correlation with origin and pathogenicity. Afr J Biotechnol 2 : 109 113.
23. Kumar LS, Sawant AS, Gupta VS, Ranjekar PK 2001) Comparative analysis of genetic diversity among Indian populations of Scirpophaga incertulas by ISSR-PCR and RAPD-PCR. Biochem Genet 39 : 297 309.
24. Longato S, Bonfante P 1997) Molecular identification of mycorrhizal fungi by direct amplification of microsatellite regions. Mycol Res 101 : 425 432.
25. Manulis S, Kogan N, Reuven M, Ben-Yephet Y 1994) Use of the RAPD technique for identification of Fusarium oxysporum f. sp. dianthi from carnation. Phytopathology 84 : 98 101.
26. Menzies JG, Bakkeren G, Matheson F, Procunier JD, Woods S 2003) Use of inter-simple sequence repeats and amplified fragment length polymorphisms to analyze genetic relationships among small grain infecting species of Ustilago. Phytopathology 93 : 167 175.
27. Meyer W, Lieckfeldt E, Wöstemeyer J, Börner TH 1992) DNA fingerprinting for differentiating aggressivity groups of the rape seed pathogen Leptosphaeria maculans. Mycol Res 96 : 651 657.
28. Meyer W, Lieckfeldt E, Kuhls K, Freedman EZ, Vilgalys R 1993) Hybridization probes for conventional DNA fingerprinting can be used as single primers in the PCR to distinguish strains of Cryptococcus neoformans. J Clin Microbiol 31 : 2274 2280.
29. Mishra KP, Fox RTV, Culham A 2003) Inter-simple sequence repeat and aggressiveness analyses revealed high genetic diversity, recombination and long-range dispersal in Fusarium culmorum. Ann Appl Biol 143 : 291 301.
30. Mishra PK, Tewari JP, Clear RM, Turkington KT 2004) Molecular genetic variation and geographical structuring in Fusarium graminearum. Ann Appl Biol 145 : 299 307.
31. Molnar A, Sulyok L, Hornok L 1990) Parasexual recombination between vegetatively incompatible strains in Fusarium oxysporum. Mycol Res 94 : 393 398.
32. Nei M. Molecular Evolutionary Genetics. New York, NY, Columbia University Press, 1987.
33. Nene YL, Haware MP 1980) Screening chickpea for resistance to wilt. Plant Dis 64 : 379 380.
34. Nene YL, Reddy MV. Chickpea diseases and their control. In : Saxena MC, Singh KB (eds The Chickpea, Oxon, UK, C.A.B. Wallingford, 1987, pp. 233 270.
35. Nene YL, Sheila VK, Sharma SB. (1984) A world list of chickpea (Cicer arietinum L.) and pigeonpea (Cajanus cajan (L.) Millsp.) pathogens. ICRISAT Pulse Pathology Progress Report 32. pp. 19, Patancheru, India.
36. Perez-Artes E, Roncero MIG, Diaz RMJ 1995) Restriction fragment length polymorphism analysis of the mitochondrial DNA of Fusarium oxysporum f. sp. ciceris. J Phytopathol 143 : 105 109.
37. Reader U, Broda P 1985) Rapid preparation of DNA from filamentous fungi. Lett Appl Microbiol 1 : 17 20.
38. Rohlf FI. Ntsys-pc. Numerical taxonomy and multivariate analysis system Version 2.0. Applied Biostatistics, New York, USA, Exeter Software, 1998.
39. Sambrook J, Fritsch EF, Maniatis T. Molecular cloning: A Laboratory manual. 2nd edn. New York, Cold Spring Harbor Laboratory Press, 1989.
40. Slatkin M 1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics 139 : 457 462.
41. Trapero-Casas A, Jimenez-Diaz RM 1985) Fungal wilt and root rot diseases of chickpea in Southern Spain. Phytopathology 75 : 1146 1151.
42. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV 1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18 : 6531 6535.
43. Winter P, Benko-Iseppon AM, Hüttel B et al. (2000) A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum× C. reticulatum cross: localization of resistance genes for Fusarium wilt races 4 and 5. Theor Appl Genet 101 : 1155 1163.
44. Zamani MR, Motallebi M, Rostamian A 2004) Characterization of Iranian isolates of Fusarium oxysporum on the basis of RAPD analysis, virulence and vegetative compatibility. J Phytopathol 152 : 449 453.
45. Zietkiewicz E, Rafalski A, Labuda D 1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genome 20 : 176 183.