-
1
-
-
34548697503
-
Deletion of ultraconserved elements yields viable mice
-
Ahituv N, Zhu Y, Visel A, Holt A, Afzal V, Pennacchio LA, Rubin EM. 2007. Deletion of ultraconserved elements yields viable mice. PLoS Biol 5: e234.
-
(2007)
PLoS Biol
, vol.5
-
-
Ahituv, N.1
Zhu, Y.2
Visel, A.3
Holt, A.4
Afzal, V.5
Pennacchio, L.A.6
Rubin, E.M.7
-
2
-
-
0032475845
-
A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro
-
DOI 10.1016/S0092-8674(00)81785-7
-
Armstrong JA, Bieker JJ, Emerson BM. 1998. A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissuespecific transcriptional regulation by EKLF in vitro. Cell 95: 93-104. (Pubitemid 28458027)
-
(1998)
Cell
, vol.95
, Issue.1
, pp. 93-104
-
-
Armstrong, J.A.1
Bieker, J.J.2
Emerson, B.M.3
-
3
-
-
0037175017
-
Rest repression of neuronal genes requires components of the hSWI.SNF complex
-
DOI 10.1074/jbc.M205691200
-
Battaglioli E, Andres ME, Rose DW, Chenoweth JG, Rosenfeld MG, Anderson ME, Mandel G. 2002. REST repression of neuronal genes requires components of the hSWI.SNF complex. J Biol Chem 277: 41038-41045. (Pubitemid 35215694)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.43
, pp. 41038-41045
-
-
Battaglioli, E.1
Andres, M.E.2
Rose, D.W.3
Chenoweth, J.G.4
Rosenfeld, M.G.5
Anderson, M.E.6
Mandel, G.7
-
4
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, et al. 2006. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125: 315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
5
-
-
33751104763
-
Role of Brg1 and HDAC2 in GR trans-repression of the pituitary POMC gene and misexpression in Cushing disease
-
DOI 10.1101/gad.1444606
-
Bilodeau S, Vallette-Kasic S, Gauthier Y, Figarella-BrangerD, Brue T, Berthelet F, Lacroix A, Batista D, Stratakis C, Hanson J, et al. 2006. Role of Brg1 and HDAC2 in GR trans-repression of the pituitary POMC gene and misexpression in Cushing disease. Genes Dev 20: 2871-2886. (Pubitemid 44771748)
-
(2006)
Genes and Development
, vol.20
, Issue.20
, pp. 2871-2886
-
-
Bilodeau, S.1
Vallette-Kasic, S.2
Gauthier, Y.3
Figarella-Branger, D.4
Brue, T.5
Berthelet, F.6
Lacroix, A.7
Batista, D.8
Stratakis, C.9
Hanson, J.10
Meij, B.11
Drouin, J.12
-
6
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
Blow MJ, McCulley DJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, et al. 2010. ChIP-Seq identification of weakly conserved heart enhancers. Nat Genet 42: 806-810.
-
(2010)
Nat Genet
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
McCulley, D.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
7
-
-
0034502484
-
A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes
-
DOI 10.1016/S1097-2765(00)00127-1
-
Bultman S, Gebuhr T, Yee D, LaMantia C, Nicholson J, Gilliam A, Randazzo F, Metzger D, Chambon P, Crabtree G, et al. 2000. A Brg1 nullmutation in the mouse reveals functional differences among mammalian SWI/SNF complexes. Mol Cell 6: 1287-1295. (Pubitemid 32045922)
-
(2000)
Molecular Cell
, vol.6
, Issue.6
, pp. 1287-1295
-
-
Bultman, S.1
Gebuhr, T.2
Yee, D.3
La, M.C.4
Nicholson, J.5
Gilliam, A.6
Randazzo, F.7
Metzger, D.8
Chambon, P.9
Crabtree, G.10
Magnuson, T.11
-
8
-
-
28444439242
-
A Brg1 mutation that uncouples ATPase activity from chromatin remodeling reveals an essential role for SWI/SNF-related complexes in beta-globin expression and erythroid development
-
DOI 10.1101/gad.1364105
-
Bultman SJ, Gebuhr TC, Magnuson T. 2005. A Brg1 mutation that uncouples ATPase activity from chromatin remodeling reveals an essential role for SWI/SNF-related complexes in β-globin expression and erythroid development. Genes Dev 19: 2849-2861. (Pubitemid 41739970)
-
(2005)
Genes and Development
, vol.19
, Issue.23
, pp. 2849-2861
-
-
Bultman, S.J.1
Gebuhr, T.C.2
Magnuson, T.3
-
9
-
-
33847291791
-
Polybromo-1-bromodomains bind histone H3 at specific acetyl-lysine positions
-
DOI 10.1016/j.bbrc.2007.01.193, PII S0006291X07002616
-
Chandrasekaran R, Thompson M. 2007. Polybromo-1-bromodomains bind histone H3 at specific acetyl-lysine positions. Biochem Biophys Res Commun 355: 661-666. (Pubitemid 46330204)
-
(2007)
Biochemical and Biophysical Research Communications
, vol.355
, Issue.3
, pp. 661-666
-
-
Chandrasekaran, R.1
Thompson, M.2
-
10
-
-
0037062922
-
Reciprocal regulation of CD4/CD8 expression by SWI/SNF-like BAF complexes
-
DOI 10.1038/nature00876
-
Chi TH, Wan M, Zhao K, Taniuchi I, Chen L, Littman DR, Crabtree GR. 2002. Reciprocal regulation of CD4/CD8 expression by SWI/SNF-like BAF complexes. Nature 418: 195-199. (Pubitemid 34773775)
-
(2002)
Nature
, vol.418
, Issue.6894
, pp. 195-199
-
-
Chi, T.H.1
Wan, M.2
Zhao, K.3
Taniuchi, I.4
Chen, L.5
Uttman, D.R.6
Crabtree, G.R.7
-
11
-
-
79953775916
-
Dynamic BRG1 recruitment during T helper differentiation and activation reveals distal regulatory elements
-
De S, Wurster AL, Precht P, Wood WH III, Becker KG, Pazin MJ. 2011. Dynamic BRG1 recruitment during T helper differentiation and activation reveals distal regulatory elements. Mol Cell Biol 31: 1512-1527.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 1512-1527
-
-
De, S.1
Wurster, A.L.2
Precht, P.3
Wood III, W.H.4
Becker, K.G.5
Pazin, M.J.6
-
12
-
-
33646869229
-
Chromatin remodelling in mammalian differentiation: Lessons from ATP-dependent remodellers
-
DOI 10.1038/nrg1882, PII N1882
-
de la Serna IL, Ohkawa Y, Imbalzano AN. 2006. Chromatin remodelling in mammalian differentiation: lessons from ATP-dependent remodellers. Nat Rev Genet 7: 461-473. (Pubitemid 43780489)
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.6
, pp. 461-473
-
-
De La, S.I.L.1
Ohkawa, Y.2
Imbalzano, A.N.3
-
13
-
-
0035199533
-
Characterization of SWI/SNF protein expression in human breast cancer cell lines and other malignancies
-
Decristofaro MF, Betz BL, Rorie CJ, Reisman DN, Wang W, Weissman BE. 2001. Characterization of SWI/SNF protein expression in human breast cancer cell lines and other malignancies. J Cell Physiol 186: 136-145.
-
(2001)
J Cell Physiol
, vol.186
, pp. 136-145
-
-
Decristofaro, M.F.1
Betz, B.L.2
Rorie, C.J.3
Reisman, D.N.4
Wang, W.5
Weissman, B.E.6
-
14
-
-
79953737587
-
Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches
-
Euskirchen GM, Auerbach RK, Davidov E, Gianoulis TA, Zhong G, Rozowsky J, Bhardwaj N, Gerstein MB, Snyder M. 2011. Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches. PLoS Genet 7: e1002008.
-
(2011)
PLoS Genet
, vol.7
-
-
Euskirchen, G.M.1
Auerbach, R.K.2
Davidov, E.3
Gianoulis, T.A.4
Zhong, G.5
Rozowsky, J.6
Bhardwaj, N.7
Gerstein, M.B.8
Snyder, M.9
-
15
-
-
41649084825
-
The chromatin-remodeling enzyme BRG1 plays an essential role in primitive erythropoiesis and vascular development
-
Griffin CT, Brennan J, Magnuson T. 2008. The chromatin-remodeling enzyme BRG1 plays an essential role in primitive erythropoiesis and vascular development. Development 135: 493-500.
-
(2008)
Development
, vol.135
, pp. 493-500
-
-
Griffin, C.T.1
Brennan, J.2
Magnuson, T.3
-
16
-
-
77954222814
-
Chromatin regulation by Brg1 underlies heart muscle development and disease
-
Hang CT, Yang J, Han P, Cheng HL, Shang C, Ashley E, Zhou B, Chang CP. 2010. Chromatin regulation by Brg1 underlies heart muscle development and disease. Nature 466: 62-67.
-
(2010)
Nature
, vol.466
, pp. 62-67
-
-
Hang, C.T.1
Yang, J.2
Han, P.3
Cheng, H.L.4
Shang, C.5
Ashley, E.6
Zhou, B.7
Chang, C.P.8
-
17
-
-
0036847620
-
Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes
-
DOI 10.1016/S0092-8674(02)01005-X
-
Hassan AH, Prochasson P, Neely KE, Galasinski SC, Chandy M, Carrozza MJ, Workman JL. 2002. Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes. Cell 111: 369-379. (Pubitemid 35345152)
-
(2002)
Cell
, vol.111
, Issue.3
, pp. 369-379
-
-
Hassan, A.H.1
Prochasson, P.2
Neely, K.E.3
Galasinski, S.C.4
Chandy, M.5
Carrozza, M.J.6
Workman, J.L.7
-
18
-
-
75749101495
-
Chromatin remodelling during development
-
Ho L, Crabtree GR. 2010. Chromatin remodelling during development. Nature 463: 474-484.
-
(2010)
Nature
, vol.463
, pp. 474-484
-
-
Ho, L.1
Crabtree, G.R.2
-
19
-
-
65249180173
-
An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency
-
Ho L, Ronan JL, Wu J, Staahl BT, Chen L, Kuo A, Lessard J, Nesvizhskii AI, Ranish J, Crabtree GR. 2009. An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency. Proc Natl Acad Sci 106: 5181-5186.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 5181-5186
-
-
Ho, L.1
Ronan, J.L.2
Wu, J.3
Staahl, B.T.4
Chen, L.5
Kuo, A.6
Lessard, J.7
Nesvizhskii, A.I.8
Ranish, J.9
Crabtree, G.R.10
-
20
-
-
77649177097
-
Predictive chromatin signatures in the mammalian genome
-
Hon GC, Hawkins RD, Ren B. 2009. Predictive chromatin signatures in the mammalian genome. Hum Mol Genet 18: R195-R201.
-
(2009)
Hum Mol Genet
, vol.18
-
-
Hon, G.C.1
Hawkins, R.D.2
Ren, B.3
-
21
-
-
80053501181
-
Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1
-
Hu G, Schones DE, Cui K, Ybarra R, Northrup D, Tang Q, Gattinoni L, Restifo NP, Huang S, Zhao K. 2011. Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1. Genome Res 21: 1650-1658.
-
(2011)
Genome Res
, vol.21
, pp. 1650-1658
-
-
Hu, G.1
Schones, D.E.2
Cui, K.3
Ybarra, R.4
Northrup, D.5
Tang, Q.6
Gattinoni, L.7
Restifo, N.P.8
Huang, S.9
Zhao, K.10
-
22
-
-
62549095522
-
SWI/SNF-Brg1 regulates self-renewal and occupies core pluripotency-related genes in embryonic stem cells
-
Kidder BL, Palmer S, Knott JG. 2009. SWI/SNF-Brg1 regulates self-renewal and occupies core pluripotency-related genes in embryonic stem cells. Stem Cells 27: 317-328.
-
(2009)
Stem Cells
, vol.27
, pp. 317-328
-
-
Kidder, B.L.1
Palmer, S.2
Knott, J.G.3
-
23
-
-
68349099626
-
ChIP-chip for genome-wide analysis of protein binding in mammalian cells
-
Kim TH, Barrera LO, Ren B. 2007. ChIP-chip for genome-wide analysis of protein binding in mammalian cells. Curr Protoc Mol Biol 79: 21.13.1-21.13.22.
-
(2007)
Curr Protoc Mol Biol
, vol.79
-
-
Kim, T.H.1
Barrera, L.O.2
Ren, B.3
-
24
-
-
70350672529
-
BRG1 directly regulates nucleosome structure and chromatin looping of the α globin locus to activate transcription
-
Kim SI, Bresnick EH, Bultman SJ. 2009. BRG1 directly regulates nucleosome structure and chromatin looping of the α globin locus to activate transcription. Nucleic Acids Res 37: 6019-6027.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6019-6027
-
-
Kim, S.I.1
Bresnick, E.H.2
Bultman, S.J.3
-
25
-
-
0023747623
-
A transgene containing lacZ inserted into the dystonia locus is expressed in neural tube
-
Kothary R, Clapoff S, Brown A, Campbell R, Peterson A, Rossant J. 1988. A transgene containing lacZ inserted into the dystonia locus is expressed in neural tube. Nature 335: 435-437.
-
(1988)
Nature
, vol.335
, pp. 435-437
-
-
Kothary, R.1
Clapoff, S.2
Brown, A.3
Campbell, R.4
Peterson, A.5
Rossant, J.6
-
26
-
-
84855957128
-
UTX, a histone H3-lysine 27 demethylase, acts as a critical switch to activate the cardiac developmental program
-
Lee S, Lee JW, Lee SK. 2012. UTX, a histone H3-lysine 27 demethylase, acts as a critical switch to activate the cardiac developmental program. Dev Cell 22: 25-37.
-
(2012)
Dev Cell
, vol.22
, pp. 25-37
-
-
Lee, S.1
Lee, J.W.2
Lee, S.K.3
-
27
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
28
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean CY, Bristor D, Hiller M, Clarke SL, Schaar BT, Lowe CB, Wenger AM, Bejerano G. 2010. GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol 28: 495-501.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
29
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
DOI 10.1038/nature06008, PII NATURE06008
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, et al. 2007. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448: 553-560. (Pubitemid 47206934)
-
(2007)
Nature
, vol.448
, Issue.7153
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.-K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
30
-
-
84894598129
-
Rapid and pervasive changes in genome-wide enhancer usage during mammalian development
-
Nord AS, Blow MJ, Attanasio C, Akiyama JA, Holt A, Hosseini R, Phouanenavong S, Plajzer-Frick I, Shoukry M, Afzal V, et al. 2013. Rapid and pervasive changes in genome-wide enhancer usage during mammalian development. Cell 155: 1521-1531.
-
(2013)
Cell
, vol.155
, pp. 1521-1531
-
-
Nord, A.S.1
Blow, M.J.2
Attanasio, C.3
Akiyama, J.A.4
Holt, A.5
Hosseini, R.6
Phouanenavong, S.7
Plajzer-Frick, I.8
Shoukry, M.9
Afzal, V.10
-
31
-
-
34548434716
-
Whole-Genome Analysis of Histone H3 Lysine 4 and Lysine 27 Methylation in Human Embryonic Stem Cells
-
DOI 10.1016/j.stem.2007.08.003, PII S1934590907001221
-
Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA. 2007. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1: 299-312. (Pubitemid 47355329)
-
(2007)
Cell Stem Cell
, vol.1
, Issue.3
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
Wei, H.6
Jonsdottir, G.A.7
Stewart, R.8
Thomson, J.A.9
-
32
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
DOI 10.1038/nature05295, PII NATURE05295
-
Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, et al. 2006. In vivo enhancer analysis of human conserved non-coding sequences. Nature 444: 499-502. (Pubitemid 44809068)
-
(2006)
Nature
, vol.444
, Issue.7118
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
Plajzer-Frick, I.11
Akiyama, J.12
De Val, S.13
Afzal, V.14
Black, B.L.15
Couronne, O.16
Eisen, M.B.17
Visel, A.18
Rubin, E.M.19
-
33
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
34
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. 2011. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470: 279-283.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
35
-
-
84864444165
-
Novel mutations target distinct subgroups of medulloblastoma
-
Robinson G, Parker M, Kranenburg TA, Lu C, Chen X, Ding L, Phoenix TN, Hedlund E, Wei L, Zhu X, et al. 2012. Novel mutations target distinct subgroups of medulloblastoma. Nature 488: 43-48.
-
(2012)
Nature
, vol.488
, pp. 43-48
-
-
Robinson, G.1
Parker, M.2
Kranenburg, T.A.3
Lu, C.4
Chen, X.5
Ding, L.6
Phoenix, T.N.7
Hedlund, E.8
Wei, L.9
Zhu, X.10
-
36
-
-
33745790132
-
Chromatin remodelling: The industrial revolution of DNA around histones
-
DOI 10.1038/nrm1945, PII NRM1945
-
Saha A, Wittmeyer J, Cairns BR. 2006. Chromatin remodelling: the industrial revolution of DNA around histones. Nat Rev Mol Cell Biol 7: 437-447. (Pubitemid 44050097)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.6
, pp. 437-447
-
-
Saha, A.1
Wittmeyer, J.2
Cairns, B.R.3
-
37
-
-
76049106059
-
Germline nonsense mutation and somatic inactivation of SMARCA4/BRG1 in a family with rhabdoid tumor predisposition syndrome
-
Schneppenheim R, Fruhwald MC, Gesk S, Hasselblatt M, Jeibmann A, Kordes U, Kreuz M, Leuschner I, Martin Subero JI, Obser T, et al. 2010. Germline nonsense mutation and somatic inactivation of SMARCA4/BRG1 in a family with rhabdoid tumor predisposition syndrome. Am J Hum Genet 86: 279-284.
-
(2010)
Am J Hum Genet
, vol.86
, pp. 279-284
-
-
Schneppenheim, R.1
Fruhwald, M.C.2
Gesk, S.3
Hasselblatt, M.4
Jeibmann, A.5
Kordes, U.6
Kreuz, M.7
Leuschner, I.8
Martin Subero, J.I.9
Obser, T.10
-
38
-
-
13444263724
-
The SWI/SNF chromatin remodeling protein Brg1 is required for vertebrate neurogenesis and mediates transactivation of Ngn and NeuroD
-
DOI 10.1242/dev.01548
-
Seo S, Richardson GA, Kroll KL. 2005. The SWI/SNF chromatin remodeling protein Brg1 is required for vertebrate neurogenesis and mediates transactivation of Ngn and NeuroD. Development 132: 105-115. (Pubitemid 40207970)
-
(2005)
Development
, vol.132
, Issue.1
, pp. 105-115
-
-
Seo, S.1
Richardson, G.A.2
Kroll, K.L.3
-
39
-
-
3042763342
-
p38 pathway targets SWI-SNF chromatin-remodeling complex to muscle-specific loci
-
DOI 10.1038/ng1378
-
Simone C, Forcales SV, Hill DA, Imbalzano AN, Latella L, Puri PL. 2004. p38 pathway targets SWI-SNF chromatin-remodeling complex to muscle-specific loci. Nat Genet 36: 738-743. (Pubitemid 38886636)
-
(2004)
Nature Genetics
, vol.36
, Issue.7
, pp. 738-743
-
-
Simone, C.1
Forcales, S.V.2
Hill, D.A.3
Imbalzano, A.N.4
Latella, L.5
Puri, P.L.6
-
40
-
-
38849156394
-
Endocardial Brg1 Represses ADAMTS1 to Maintain the Microenvironment for Myocardial Morphogenesis
-
DOI 10.1016/j.devcel.2007.11.018, PII S1534580707004741
-
Stankunas K, Hang CT, Tsun ZY, Chen H, Lee NV, Wu JI, Shang C, Bayle JH, Shou W, Iruela-Arispe ML, et al. 2008. Endocardial Brg1 represses ADAMTS1 to maintain the microenvironment for myocardial morphogenesis. Dev Cell 14: 298-311. (Pubitemid 351189176)
-
(2008)
Developmental Cell
, vol.14
, Issue.2
, pp. 298-311
-
-
Stankunas, K.1
Hang, C.T.2
Tsun, Z.-Y.3
Chen, H.4
Lee, N.V.5
Wu, J.I.6
Shang, C.7
Bayle, J.H.8
Shou, W.9
Iruela-Arispe, M.L.10
Chang, C.-P.11
-
41
-
-
84880317634
-
Chromatin remodelling complex dosage modulates transcription factor function in heart development
-
Takeuchi JK, Lou X, Alexander JM, Sugizaki H, Delgado-Olguin P, Holloway AK, Mori AD, Wylie JN, Munson C, Zhu Y et al. 2011. Chromatin remodelling complex dosage modulates transcription factor function in heart development. Nat Commun 2: 187.
-
(2011)
Nat Commun
, vol.2
, pp. 187
-
-
Takeuchi, J.K.1
Lou, X.2
Alexander, J.M.3
Sugizaki, H.4
Delgado-Olguin, P.5
Holloway, A.K.6
Mori, A.D.7
Wylie, J.N.8
Munson, C.9
Zhu, Y.10
-
42
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7: 562-578.
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
43
-
-
33846112470
-
VISTA Enhancer Browser - A database of tissue-specific human enhancers
-
DOI 10.1093/nar/gkl822
-
Visel A, Minovitsky S, Dubchak I, Pennacchio LA. 2007. VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Res 35: D88-D92. (Pubitemid 46056176)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Visel, A.1
Minovitsky, S.2
Dubchak, I.3
Pennacchio, L.A.4
-
44
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, et al. 2009. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457: 854-858.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
45
-
-
79959653996
-
SWI/SNF nucleosome remodellers and cancer
-
Wilson BG, Roberts CW. 2011. SWI/SNF nucleosome remodellers and cancer. Natl Rev 11: 481-492.
-
(2011)
Natl Rev
, vol.11
, pp. 481-492
-
-
Wilson, B.G.1
Roberts, C.W.2
-
46
-
-
84872509787
-
Olig2 targets chromatin remodelers to enhancers to initiate oligodendrocyte differentiation
-
Yu Y, Chen Y, Kim B, Wang H, Zhao C, He X, Liu L, Liu W, Wu LM, Mao M, et al. 2013. Olig2 targets chromatin remodelers to enhancers to initiate oligodendrocyte differentiation. Cell 152: 248-261.
-
(2013)
Cell
, vol.152
, pp. 248-261
-
-
Yu, Y.1
Chen, Y.2
Kim, B.3
Wang, H.4
Zhao, C.5
He, X.6
Liu, L.7
Liu, W.8
Wu, L.M.9
Mao, M.10
-
47
-
-
79961229129
-
Dual role of Brg chromatin remodeling factor in Sonic hedgehog signaling during neural development
-
Zhan X, Shi X, Zhang Z, Chen Y, Wu JI. 2011. Dual role of Brg chromatin remodeling factor in Sonic hedgehog signaling during neural development. Proc Natl Acad Sci 108: 12758-12763.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 12758-12763
-
-
Zhan, X.1
Shi, X.2
Zhang, Z.3
Chen, Y.4
Wu, J.I.5
-
48
-
-
0036315846
-
Cell cycle arrest and repression of cyclin D1 transcription by INI1/hSNF5
-
DOI 10.1128/MCB.22.16.5975-5988.2002
-
Zhang ZK, Davies KP, Allen J, Zhu L, Pestell RG, Zagzag D, Kalpana GV. 2002. Cell cycle arrest and repression of cyclin D1 transcription by INI1/hSNF5. Mol Cell Biol 22: 5975-5988. (Pubitemid 34815844)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.16
, pp. 5975-5988
-
-
Zhang, Z.-K.1
Davies, K.P.2
Allen, J.3
Zhu, L.4
Pestell, R.G.5
Zagzag, D.6
Kalpana, G.V.7
-
49
-
-
53849146020
-
Model-based analysis of ChIPSeq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, LiW, et al. 2008. Model-based analysis of ChIPSeq (MACS). Genome Biol 9: R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
50
-
-
79959486572
-
SWI/SNF complexes containing Brahma or Brahma-related gene 1 play distinct roles in smooth muscle development
-
Zhang M, Chen M, Kim JR, Zhou J, Jones RE, Tune JD, Kassab GS, Metzger D, Ahlfeld S, Conway SJ, et al. 2011. SWI/SNF complexes containing Brahma or Brahma-related gene 1 play distinct roles in smooth muscle development. Mol Cell Biol 31: 2618-2631.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 2618-2631
-
-
Zhang, M.1
Chen, M.2
Kim, J.R.3
Zhou, J.4
Jones, R.E.5
Tune, J.D.6
Kassab, G.S.7
Metzger, D.8
Ahlfeld, S.9
Conway, S.J.10
-
51
-
-
0032567080
-
Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling
-
Zhao K, Wang W, Rando OJ, Xue Y, Swiderek K, Kuo A, Crabtree GR. 1998. Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling. Cell 95: 625-636. (Pubitemid 28544124)
-
(1998)
Cell
, vol.95
, Issue.5
, pp. 625-636
-
-
Zhao, K.1
Wang, W.2
Rando, O.J.3
Xue, Y.4
Swiderek, K.5
Kuo, A.6
Crabtree, G.R.7
-
52
-
-
34548424709
-
Whole-Genome Mapping of Histone H3 Lys4 and 27 Trimethylations Reveals Distinct Genomic Compartments in Human Embryonic Stem Cells
-
DOI 10.1016/j.stem.2007.08.004, PII S1934590907001233
-
Zhao XD, Han X, Chew JL, Liu J, Chiu KP, Choo A, Orlov YL, Sung WK, Shahab A, Kuznetsov VA, et al. 2007. Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells. Cell Stem Cell 1: 286-298. (Pubitemid 47370914)
-
(2007)
Cell Stem Cell
, vol.1
, Issue.3
, pp. 286-298
-
-
Zhao, X.D.1
Han, X.2
Chew, J.L.3
Liu, J.4
Chiu, K.P.5
Choo, A.6
Orlov, Y.L.7
Sung, W.-K.8
Shahab, A.9
Kuznetsov, V.A.10
Bourque, G.11
Oh, S.12
Ruan, Y.13
Ng, H.-H.14
Wei, C.-L.15
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