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Volumn 165, Issue 2, 2014, Pages 826-840

Genome-wide analysis of heat-sensitive alternative splicing in Physcomitrella patens

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EID: 84901775009     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.113.230540     Document Type: Article
Times cited : (108)

References (76)
  • 1
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    • Alexa A, Rahnenführer J, Lengauer T (2006) Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22: 1600-1607
    • (2006) Bioinformatics , vol.22 , pp. 1600-1607
    • Alexa, A.1    Rahnenführer, J.2    Lengauer, T.3
  • 5
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black DL (2003) Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 72: 291-336
    • (2003) Annu Rev Biochem , vol.72 , pp. 291-336
    • Black, D.L.1
  • 6
    • 0024114933 scopus 로고
    • Heat shock but not other stress inducers leads to the disruption of a sub-set of snRNPs and inhibition of in vitro splicing in HeLa cells
    • Bond U (1988) Heat shock but not other stress inducers leads to the disruption of a sub-set of snRNPs and inhibition of in vitro splicing in HeLa cells. EMBO J 7: 3509-3518
    • (1988) EMBO J , vol.7 , pp. 3509-3518
    • Bond, U.1
  • 7
    • 69449093950 scopus 로고    scopus 로고
    • A role for the ribosome in development
    • Byrne ME (2009) A role for the ribosome in development. Trends Plant Sci 14: 512-519
    • (2009) Trends Plant Sci , vol.14 , pp. 512-519
    • Byrne, M.E.1
  • 8
    • 34247197937 scopus 로고    scopus 로고
    • The nonsense-mediated decay RNA surveillance pathway
    • Chang YF, Imam JS, Wilkinson MF (2007) The nonsense-mediated decay RNA surveillance pathway. Annu Rev Biochem 76: 51-74
    • (2007) Annu Rev Biochem , vol.76 , pp. 51-74
    • Chang, Y.F.1    Imam, J.S.2    Wilkinson, M.F.3
  • 9
    • 33846345430 scopus 로고    scopus 로고
    • A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis
    • Charng YY, Liu HC, Liu NY, Chi WT, Wang CN, Chang SH, Wang TT (2007) A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis. Plant Physiol 143: 251-262
    • (2007) Plant Physiol , vol.143 , pp. 251-262
    • Charng, Y.Y.1    Liu, H.C.2    Liu, N.Y.3    Chi, W.T.4    Wang, C.N.5    Chang, S.H.6    Wang, T.T.7
  • 10
    • 33745452924 scopus 로고    scopus 로고
    • Arabidopsis Hsa32, a novel heat shock protein, is essential for acquired thermotolerance during long recovery after acclimation
    • Charng YY, Liu HC, Liu NY, Hsu FC, Ko SS (2006) Arabidopsis Hsa32, a novel heat shock protein, is essential for acquired thermotolerance during long recovery after acclimation. Plant Physiol 140: 1297-1305
    • (2006) Plant Physiol , vol.140 , pp. 1297-1305
    • Charng, Y.Y.1    Liu, H.C.2    Liu, N.Y.3    Hsu, F.C.4    Ko, S.S.5
  • 11
    • 84864372799 scopus 로고    scopus 로고
    • Bio301: A Webbased EST annotation pipeline that facilitates functional comparison studies
    • Article 139842
    • Chen Y, Chen Y, Lin W, Hsiao C, Chiu H, Ho J (2012a) Bio301: a Webbased EST annotation pipeline that facilitates functional comparison studies. ISRN Bioinformatics 2012: Article 139842
    • (2012) ISRN Bioinformatics , vol.2012
    • Chen, Y.1    Chen, Y.2    Lin, W.3    Hsiao, C.4    Chiu, H.5    Ho, J.6
  • 12
    • 84861438100 scopus 로고    scopus 로고
    • Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis
    • Chen YR, Su YS, Tu SL (2012b) Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis. Proc Natl Acad Sci USA 109: 8310-8315
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 8310-8315
    • Chen, Y.R.1    Su, Y.S.2    Tu, S.L.3
  • 13
    • 24344437155 scopus 로고    scopus 로고
    • Molecular mechanism of temperature sensing by the circadian clock of Neurospora crassa
    • Diernfellner ACR, Schafmeier T, Merrow MW, Brunner M (2005) Molecular mechanism of temperature sensing by the circadian clock of Neurospora crassa. Genes Dev 19: 1968-1973
    • (2005) Genes Dev , vol.19 , pp. 1968-1973
    • Diernfellner, A.C.R.1    Schafmeier, T.2    Merrow, M.W.3    Brunner, M.4
  • 14
    • 0021228666 scopus 로고
    • Heat shock-induced translational alterations in HeLa cells: Initiation factor modifications and the inhibition of translation
    • Duncan R, Hershey JW (1984) Heat shock-induced translational alterations in HeLa cells: initiation factor modifications and the inhibition of translation. J Biol Chem 259: 11882-11889
    • (1984) J Biol Chem , vol.259 , pp. 11882-11889
    • Duncan, R.1    Hershey, J.W.2
  • 17
    • 21244502587 scopus 로고    scopus 로고
    • Alternative splicing regulates the transcriptional activity of Drosophila heat shock transcription factor in response to heat/cold stress
    • Fujikake N, Nagai Y, Popiel HA, Kano H, Yamaguchi M, Toda T (2005) Alternative splicing regulates the transcriptional activity of Drosophila heat shock transcription factor in response to heat/cold stress. FEBS Lett 579: 3842-3848
    • (2005) FEBS Lett , vol.579 , pp. 3842-3848
    • Fujikake, N.1    Nagai, Y.2    Popiel, H.A.3    Kano, H.4    Yamaguchi, M.5    Toda, T.6
  • 19
    • 0029087566 scopus 로고
    • Tissue-dependent expression of heat shock factor 2 isoforms with distinct transcriptional activities
    • Goodson ML, Park-Sarge OK, Sarge KD (1995) Tissue-dependent expression of heat shock factor 2 isoforms with distinct transcriptional activities. Mol Cell Biol 15: 5288-5293
    • (1995) Mol Cell Biol , vol.15 , pp. 5288-5293
    • Goodson, M.L.1    Park-Sarge, O.K.2    Sarge, K.D.3
  • 20
    • 0033835333 scopus 로고    scopus 로고
    • Sorting out the complexity of SR protein functions
    • Graveley BR (2000) Sorting out the complexity of SR protein functions. RNA 6: 1197-1211
    • (2000) RNA , vol.6 , pp. 1197-1211
    • Graveley, B.R.1
  • 21
    • 0036226603 scopus 로고    scopus 로고
    • BLAT: The BLAST-like alignment tool
    • Kent WJ (2002) BLAT: the BLAST-like alignment tool. Genome Res 12: 656-664
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 22
    • 0036007905 scopus 로고    scopus 로고
    • Interaction between Arabidopsis heat shock transcription factor 1 and 70 kDa heat shock proteins
    • Kim BH, Schöffl F (2002) Interaction between Arabidopsis heat shock transcription factor 1 and 70 kDa heat shock proteins. J Exp Bot 53: 371-375
    • (2002) J Exp Bot , vol.53 , pp. 371-375
    • Kim, B.H.1    Schöffl, F.2
  • 23
    • 73149085055 scopus 로고    scopus 로고
    • H2A. Z-containing nucleosomes mediate the thermosensory response in Arabidopsis
    • Kumar SV, Wigge PA (2010) H2A. Z-containing nucleosomes mediate the thermosensory response in Arabidopsis. Cell 140: 136-147
    • (2010) Cell , vol.140 , pp. 136-147
    • Kumar, S.V.1    Wigge, P.A.2
  • 25
    • 84879697865 scopus 로고    scopus 로고
    • Genome-wide detection of condition-sensitive alternative splicing in Arabidopsis roots
    • Li W, Lin WD, Ray P, Lan P, Schmidt W (2013) Genome-wide detection of condition-sensitive alternative splicing in Arabidopsis roots. Plant Physiol 162: 1750-1763
    • (2013) Plant Physiol , vol.162 , pp. 1750-1763
    • Li, W.1    Lin, W.D.2    Ray, P.3    Lan, P.4    Schmidt, W.5
  • 26
    • 31344469004 scopus 로고    scopus 로고
    • GOBU: Toward an integration interface for biological objects
    • Lin WD, Chen YC, Ho JM, Hsiao CD (2006) GOBU: toward an integration interface for biological objects. J Inf Sci Eng 22: 19-29
    • (2006) J Inf Sci Eng , vol.22 , pp. 19-29
    • Lin, W.D.1    Chen, Y.C.2    Ho, J.M.3    Hsiao, C.D.4
  • 27
    • 33646158618 scopus 로고    scopus 로고
    • 2+ and AtCaM3 are involved in the expression of heat shock protein gene in Arabidopsis
    • 2+ and AtCaM3 are involved in the expression of heat shock protein gene in Arabidopsis. Plant Cell Environ 28: 1276-1284
    • (2005) Plant Cell Environ , vol.28 , pp. 1276-1284
    • Liu, H.T.1    Sun, D.Y.2    Zhou, R.G.3
  • 28
    • 84877075283 scopus 로고    scopus 로고
    • An autoregulatory loop controlling Arabidopsis HsfA2 expression: Role of heat shockinduced alternative splicing
    • Liu J, Sun N, Liu M, Liu J, Du B, Wang X, Qi X (2013) An autoregulatory loop controlling Arabidopsis HsfA2 expression: role of heat shockinduced alternative splicing. Plant Physiol 162: 512-521
    • (2013) Plant Physiol , vol.162 , pp. 512-521
    • Liu, J.1    Sun, N.2    Liu, M.3    Liu, J.4    Du, B.5    Wang, X.6    Qi, X.7
  • 31
    • 0029767662 scopus 로고    scopus 로고
    • SR proteins and splicing control
    • Manley JL, Tacke R (1996) SR proteins and splicing control. Genes Dev 10: 1569-1579
    • (1996) Genes Dev , vol.10 , pp. 1569-1579
    • Manley, J.L.1    Tacke, R.2
  • 32
    • 84861890038 scopus 로고    scopus 로고
    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
    • Marquez Y, Brown JWS, Simpson C, Barta A, Kalyna M (2012) Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res 22: 1184-1195
    • (2012) Genome Res , vol.22 , pp. 1184-1195
    • Marquez, Y.1    Brown, J.W.S.2    Simpson, C.3    Barta, A.4    Kalyna, M.5
  • 33
    • 0030753981 scopus 로고    scopus 로고
    • Intronic and exonic sequences modulate 5' splice site selection in plant nuclei
    • McCullough AJ, Schuler MA (1997) Intronic and exonic sequences modulate 5' splice site selection in plant nuclei. Nucleic Acids Res 25: 1071-1077
    • (1997) Nucleic Acids Res , vol.25 , pp. 1071-1077
    • McCullough, A.J.1    Schuler, M.A.2
  • 34
    • 84870669546 scopus 로고    scopus 로고
    • The yeast SRlike protein Npl3 links chromatin modification to mRNA processing
    • Moehle EA, Ryan CJ, Krogan NJ, Kress TL, Guthrie C (2012) The yeast SRlike protein Npl3 links chromatin modification to mRNA processing. PLoS Genet 8: e1003101
    • (2012) PLoS Genet , vol.8
    • Moehle, E.A.1    Ryan, C.J.2    Krogan, N.J.3    Kress, T.L.4    Guthrie, C.5
  • 35
    • 0032535245 scopus 로고    scopus 로고
    • Regulation of the heat shock transcriptional response: Cross talk between a family of heat shock factors, molecular chaperones, and negative regulators
    • Morimoto RI (1998) Regulation of the heat shock transcriptional response: cross talk between a family of heat shock factors, molecular chaperones, and negative regulators. Genes Dev 12: 3788-3796
    • (1998) Genes Dev , vol.12 , pp. 3788-3796
    • Morimoto, R.I.1
  • 37
    • 0027202273 scopus 로고
    • The DNA-binding activity of the human heat shock transcription factor is regulated in vivo by hsp70
    • Mosser DD, Duchaine J, Massie B (1993) The DNA-binding activity of the human heat shock transcription factor is regulated in vivo by hsp70. Mol Cell Biol 13: 5427-5438
    • (1993) Mol Cell Biol , vol.13 , pp. 5427-5438
    • Mosser, D.D.1    Duchaine, J.2    Massie, B.3
  • 38
    • 33750551504 scopus 로고    scopus 로고
    • Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress
    • Nishizawa A, Yabuta Y, Yoshida E, Maruta T, Yoshimura K, Shigeoka S (2006) Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress. Plant J 48: 535-547
    • (2006) Plant J , vol.48 , pp. 535-547
    • Nishizawa, A.1    Yabuta, Y.2    Yoshida, E.3    Maruta, T.4    Yoshimura, K.5    Shigeoka, S.6
  • 39
    • 33847343883 scopus 로고    scopus 로고
    • Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: Regulation by hormones and stresses
    • Palusa SG, Ali GS, Reddy ASN (2007) Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses. Plant J 49: 1091-1107
    • (2007) Plant J , vol.49 , pp. 1091-1107
    • Palusa, S.G.1    Ali, G.S.2    Reddy, A.S.N.3
  • 40
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by highthroughput sequencing
    • Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ (2008) Deep surveying of alternative splicing complexity in the human transcriptome by highthroughput sequencing. Nat Genet 40: 1413-1415
    • (2008) Nat Genet , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 41
    • 34249987613 scopus 로고    scopus 로고
    • A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana
    • Pertea M, Mount SM, Salzberg SL (2007) A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana. BMC Bioinformatics 8: 159
    • (2007) BMC Bioinformatics , vol.8 , pp. 159
    • Pertea, M.1    Mount, S.M.2    Salzberg, S.L.3
  • 42
    • 84863654457 scopus 로고    scopus 로고
    • Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing
    • Pradeepa MM, Sutherland HG, Ule J, Grimes GR, Bickmore WA (2012) Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing. PLoS Genet 8: e1002717
    • (2012) PLoS Genet , vol.8
    • Pradeepa, M.M.1    Sutherland, H.G.2    Ule, J.3    Grimes, G.R.4    Bickmore, W.A.5
  • 43
    • 0029144216 scopus 로고
    • A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer
    • Ramchatesingh J, Zahler AM, Neugebauer KM, Roth MB, Cooper TA (1995) A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer. Mol Cell Biol 15: 4898-4907
    • (1995) Mol Cell Biol , vol.15 , pp. 4898-4907
    • Ramchatesingh, J.1    Zahler, A.M.2    Neugebauer, K.M.3    Roth, M.B.4    Cooper, T.A.5
  • 44
    • 34250813107 scopus 로고    scopus 로고
    • Alternative splicing of pre-messenger RNAs in plants in the genomic era
    • Reddy AS (2007) Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu Rev Plant Biol 58: 267-294
    • (2007) Annu Rev Plant Biol , vol.58 , pp. 267-294
    • Reddy, A.S.1
  • 45
    • 84855280812 scopus 로고    scopus 로고
    • Localization and dynamics of nuclear speckles in plants
    • Reddy AS, Day IS, Göhring J, Barta A (2012) Localization and dynamics of nuclear speckles in plants. Plant Physiol 158: 67-77
    • (2012) Plant Physiol , vol.158 , pp. 67-77
    • Reddy, A.S.1    Day, I.S.2    Göhring, J.3    Barta, A.4
  • 46
    • 27644515982 scopus 로고    scopus 로고
    • Controlled expression of recombinant proteins in Physcomitrella patens by a conditional heat-shock promoter: A tool for plant research and biotechnology
    • Saidi Y, Finka A, Chakhporanian M, Zrÿd JP, Schaefer DG, Goloubinoff P (2005) Controlled expression of recombinant proteins in Physcomitrella patens by a conditional heat-shock promoter: a tool for plant research and biotechnology. Plant Mol Biol 59: 697-711
    • (2005) Plant Mol Biol , vol.59 , pp. 697-711
    • Saidi, Y.1    Finka, A.2    Chakhporanian, M.3    Zrÿd, J.P.4    Schaefer, D.G.5    Goloubinoff, P.6
  • 47
    • 70849116667 scopus 로고    scopus 로고
    • The heat shock response in moss plants is regulated by specific calcium-permeable channels in the plasma membrane
    • Saidi Y, Finka A, Muriset M, Bromberg Z, Weiss YG, Maathuis FJM, Goloubinoff P (2009) The heat shock response in moss plants is regulated by specific calcium-permeable channels in the plasma membrane. Plant Cell 21: 2829-2843
    • (2009) Plant Cell , vol.21 , pp. 2829-2843
    • Saidi, Y.1    Finka, A.2    Muriset, M.3    Bromberg, Z.4    Weiss, Y.G.5    Maathuis, F.J.M.6    Goloubinoff, P.7
  • 49
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview: Extensible visualization of microarray data
    • Saldanha AJ (2004) Java Treeview: extensible visualization of microarray data. Bioinformatics 20: 3246-3248
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 50
    • 84882837488 scopus 로고    scopus 로고
    • Hsp90@chromatin. nucleus: An emerging hub of a networker
    • Sawarkar R, Paro R (2013) Hsp90@chromatin. nucleus: an emerging hub of a networker. Trends Cell Biol 23: 193-201
    • (2013) Trends Cell Biol , vol.23 , pp. 193-201
    • Sawarkar, R.1    Paro, R.2
  • 51
    • 33646346645 scopus 로고    scopus 로고
    • The heat stress transcription factor HsfA2 serves as a regulatory amplifier of a subset of genes in the heat stress response in Arabidopsis
    • Schramm F, Ganguli A, Kiehlmann E, Englich G, Walch D, von Koskull-Döring P (2006) The heat stress transcription factor HsfA2 serves as a regulatory amplifier of a subset of genes in the heat stress response in Arabidopsis. Plant Mol Biol 60: 759-772
    • (2006) Plant Mol Biol , vol.60 , pp. 759-772
    • Schramm, F.1    Ganguli, A.2    Kiehlmann, E.3    Englich, G.4    Walch, D.5    von Koskull-Döring, P.6
  • 52
    • 77952584374 scopus 로고    scopus 로고
    • Chromatin density and splicing destiny: On the cross-talk between chromatin structure and splicing
    • Schwartz S, Ast G (2010) Chromatin density and splicing destiny: on the cross-talk between chromatin structure and splicing. EMBO J 29: 1629-1636
    • (2010) EMBO J , vol.29 , pp. 1629-1636
    • Schwartz, S.1    Ast, G.2
  • 54
    • 77950347530 scopus 로고    scopus 로고
    • A stromal heat shock protein 70 system functions in protein import into chloroplasts in the moss Physcomitrella patens
    • Shi LX, Theg SM (2010) A stromal heat shock protein 70 system functions in protein import into chloroplasts in the moss Physcomitrella patens. Plant Cell 22: 205-220
    • (2010) Plant Cell , vol.22 , pp. 205-220
    • Shi, L.X.1    Theg, S.M.2
  • 55
    • 0032031725 scopus 로고    scopus 로고
    • Molecular chaperones as HSF1-specific transcriptional repressors
    • Shi Y, Mosser DD, Morimoto RI (1998) Molecular chaperones as HSF1-specific transcriptional repressors. Genes Dev 12: 654-666
    • (1998) Genes Dev , vol.12 , pp. 654-666
    • Shi, Y.1    Mosser, D.D.2    Morimoto, R.I.3
  • 56
    • 0025224876 scopus 로고
    • Inactivation of splicing factors in HeLa cells subjected to heat shock
    • Shukla RR, Dominski Z, Zwierzynski T, Kole R (1990) Inactivation of splicing factors in HeLa cells subjected to heat shock. J Biol Chem 265: 20377-20383
    • (1990) J Biol Chem , vol.265 , pp. 20377-20383
    • Shukla, R.R.1    Dominski, Z.2    Zwierzynski, T.3    Kole, R.4
  • 59
    • 79960888467 scopus 로고    scopus 로고
    • Transcription factor-dependent chromatin remodeling at heat shock and copper-responsive promoters in Chlamydomonas reinhardtii
    • Strenkert D, Schmollinger S, Sommer F, Schulz-Raffelt M, Schroda M (2011) Transcription factor-dependent chromatin remodeling at heat shock and copper-responsive promoters in Chlamydomonas reinhardtii. Plant Cell 23: 2285-2301
    • (2011) Plant Cell , vol.23 , pp. 2285-2301
    • Strenkert, D.1    Schmollinger, S.2    Sommer, F.3    Schulz-Raffelt, M.4    Schroda, M.5
  • 60
    • 64749086697 scopus 로고    scopus 로고
    • The cytosolic protein response as a subcomponent of the wider heat shock response in Arabidopsis
    • Sugio A, Dreos R, Aparicio F, Maule AJ (2009) The cytosolic protein response as a subcomponent of the wider heat shock response in Arabidopsis. Plant Cell 21: 642-654
    • (2009) Plant Cell , vol.21 , pp. 642-654
    • Sugio, A.1    Dreos, R.2    Aparicio, F.3    Maule, A.J.4
  • 62
    • 38049120303 scopus 로고    scopus 로고
    • A heat-activated MAP kinase (HAMK) as a mediator of heat shock response in tobacco cells
    • Suri SS, Dhindsa RS (2008) A heat-activated MAP kinase (HAMK) as a mediator of heat shock response in tobacco cells. Plant Cell Environ 31: 218-226
    • (2008) Plant Cell Environ , vol.31 , pp. 218-226
    • Suri, S.S.1    Dhindsa, R.S.2
  • 64
    • 84871998837 scopus 로고    scopus 로고
    • Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA
    • Thomas J, Palusa SG, Prasad KV, Ali GS, Surabhi GK, Ben-Hur A, Abdel-Ghany SE, Reddy AS (2012) Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA. Plant J 72: 935-946
    • (2012) Plant J , vol.72 , pp. 935-946
    • Thomas, J.1    Palusa, S.G.2    Prasad, K.V.3    Ali, G.S.4    Surabhi, G.K.5    Ben-Hur, A.6    Abdel-Ghany, S.E.7    Reddy, A.S.8
  • 65
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 67
    • 0031786750 scopus 로고    scopus 로고
    • Does the membrane's physical state control the expression of heat shock and other genes?
    • Vigh L, Maresca B, Harwood JL (1998) Does the membrane's physical state control the expression of heat shock and other genes? Trends Biochem Sci 23: 369-374
    • (1998) Trends Biochem Sci , vol.23 , pp. 369-374
    • Vigh, L.1    Maresca, B.2    Harwood, J.L.3
  • 69
    • 0031439105 scopus 로고    scopus 로고
    • Heat shock increases the association of binding protein-1 with initiation factor 4E
    • Vries RG, Flynn A, Patel JC, Wang X, Denton RM, Proud CG (1997) Heat shock increases the association of binding protein-1 with initiation factor 4E. J Biol Chem 272: 32779-32784
    • (1997) J Biol Chem , vol.272 , pp. 32779-32784
    • Vries, R.G.1    Flynn, A.2    Patel, J.C.3    Wang, X.4    Denton, R.M.5    Proud, C.G.6
  • 71
    • 38049153332 scopus 로고    scopus 로고
    • Cytosolic HSP90 regulates the heat shock response that is responsible for heat acclimation in Arabidopsis thaliana
    • Yamada K, Fukao Y, Hayashi M, Fukazawa M, Suzuki I, Nishimura M (2007) Cytosolic HSP90 regulates the heat shock response that is responsible for heat acclimation in Arabidopsis thaliana. J Biol Chem 282: 37794-37804
    • (2007) J Biol Chem , vol.282 , pp. 37794-37804
    • Yamada, K.1    Fukao, Y.2    Hayashi, M.3    Fukazawa, M.4    Suzuki, I.5    Nishimura, M.6
  • 72
    • 84870390234 scopus 로고    scopus 로고
    • Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana
    • Yan K, Liu P, Wu CA, Yang GD, Xu R, Guo QH, Huang JG, Zheng CC (2012) Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana. Mol Cell 48: 521-531
    • (2012) Mol Cell , vol.48 , pp. 521-531
    • Yan, K.1    Liu, P.2    Wu, C.A.3    Yang, G.D.4    Xu, R.5    Guo, Q.H.6    Huang, J.G.7    Zheng, C.C.8
  • 73
    • 0029797697 scopus 로고    scopus 로고
    • A complex of nuclear proteins mediates SR protein binding to a purine-rich splicing enhancer
    • Yeakley JM, Morfin JP, Rosenfeld MG, Fu XD (1996) A complex of nuclear proteins mediates SR protein binding to a purine-rich splicing enhancer. Proc Natl Acad Sci USA 93: 7582-7587
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 7582-7587
    • Yeakley, J.M.1    Morfin, J.P.2    Rosenfeld, M.G.3    Fu, X.D.4
  • 74
    • 0022531458 scopus 로고
    • RNA splicing is interrupted by heat shock and is rescued by heat shock protein synthesis
    • Yost HJ, Lindquist S (1986) RNA splicing is interrupted by heat shock and is rescued by heat shock protein synthesis. Cell 45: 185-193
    • (1986) Cell , vol.45 , pp. 185-193
    • Yost, H.J.1    Lindquist, S.2
  • 75
    • 77951871117 scopus 로고    scopus 로고
    • Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
    • Zhang G, Guo G, Hu X, Zhang Y, Li Q, Li R, Zhuang R, Lu Z, He Z, Fang X, et al (2010) Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res 20: 646-654
    • (2010) Genome Res , vol.20 , pp. 646-654
    • Zhang, G.1    Guo, G.2    Hu, X.3    Zhang, Y.4    Li, Q.5    Li, R.6    Zhuang, R.7    Lu, Z.8    He, Z.9    Fang, X.10
  • 76
    • 84880334849 scopus 로고    scopus 로고
    • Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions
    • Zimmer AD, Lang D, Buchta K, Rombauts S, Nishiyama T, Hasebe M, Van de Peer Y, Rensing SA, Reski R (2013) Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. BMC Genomics 14: 498
    • (2013) BMC Genomics , vol.14 , pp. 498
    • Zimmer, A.D.1    Lang, D.2    Buchta, K.3    Rombauts, S.4    Nishiyama, T.5    Hasebe, M.6    Van de Peer, Y.7    Rensing, S.A.8    Reski, R.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.