-
1
-
-
0034326355
-
What does 'chromatin remodeling' mean
-
Aalfs, J.D., and Kingston, R.E. (2000). What does 'chromatin remodeling' mean? Trends Biochem. Sci. 25: 548-555.
-
(2000)
Trends Biochem. Sci
, vol.25
, pp. 548-555
-
-
Aalfs, J.D.1
Kingston, R.E.2
-
2
-
-
0021100706
-
Acetylation and methylation patterns of core his-tones are modified after heat or arsenite treatment of Drosophila tissue culture cells
-
Arrigo, A.P. (1983). Acetylation and methylation patterns of core his-tones are modified after heat or arsenite treatment of Drosophila tissue culture cells. Nucleic Acids Res. 11: 1389-1404.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 1389-1404
-
-
Arrigo, A.P.1
-
3
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
Bernstein, B.E., Kamal, M., Lindblad-Toh, K., Bekiranov, S., Bailey, D.K., Huebert, D.J., McMahon, S., Karlsson, E.K., Kulbokas III E.J., Gingeras, T.R., Schreiber, S.L., and Lander, E.S. (2005). Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120: 169-181.
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas, E.J.9
Gingeras, T.R.10
Schreiber, S.L.11
Lander, E.S.12
-
4
-
-
8444245244
-
Global nucleosome occupancy in yeast
-
Bernstein, B.E., Liu, C.L., Humphrey, E.L., Perlstein, E.O., and Schreiber, S.L. (2004). Global nucleosome occupancy in yeast. Genome Biol. 5: R62.
-
(2004)
Genome Biol
, vol.5
-
-
Bernstein, B.E.1
Liu, C.L.2
Humphrey, E.L.3
Perlstein, E.O.4
Schreiber, S.L.5
-
5
-
-
33746828109
-
Molecular recognition of histone H3 by the WD40 protein WDR5
-
Couture, J.F., Collazo, E., and Trievel, R.C. (2006). Molecular recognition of histone H3 by the WD40 protein WDR5. Nat. Struct. Mol. Biol. 13: 698-703.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 698-703
-
-
Couture, J.F.1
Collazo, E.2
Trievel, R.C.3
-
6
-
-
0024743663
-
The argininosucci-nate lyase gene of Chlamydomonas reinhardtii: An important tool for nuclear transformation and for correlating the genetic and molecular maps of the ARG7 locus
-
Debuchy, R., Purton, S., and Rochaix, J.D. (1989). The argininosucci-nate lyase gene of Chlamydomonas reinhardtii: An important tool for nuclear transformation and for correlating the genetic and molecular maps of the ARG7 locus. EMBO J. 8: 2803-2809.
-
(1989)
EMBO J
, vol.8
, pp. 2803-2809
-
-
Debuchy, R.1
Purton, S.2
Rochaix, J.D.3
-
7
-
-
14344251024
-
Do protein motifs read the histone code
-
de la Cruz, X., Lois, S., Sánchez-Molina, S., and Martínez-Balbás, M.A. (2005). Do protein motifs read the histone code? Bioessays 27: 164-175.
-
(2005)
Bioessays
, vol.27
, pp. 164-175
-
-
de la Cruz, X.1
Lois, S.2
Sánchez-Molina, S.3
Martínez-Balbás, M.A.4
-
8
-
-
77952782916
-
Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe-S clusters and interact with stromal HSP70B
-
Dorn, K.V., Willmund, F., Schwarz, C., Henselmann, C., Pohl, T., Hess, B., Veyel, D., Usadel, B., Friedrich, T., Nickelsen, J., and Schroda, M. (2010). Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe-S clusters and interact with stromal HSP70B. Biochem. J. 427: 205-215.
-
(2010)
Biochem. J
, vol.427
, pp. 205-215
-
-
Dorn, K.V.1
Willmund, F.2
Schwarz, C.3
Henselmann, C.4
Pohl, T.5
Hess, B.6
Veyel, D.7
Usadel, B.8
Friedrich, T.9
Nickelsen, J.10
Schroda, M.11
-
9
-
-
8544234958
-
Genetic dissection of nutritional copper signaling in Chlamydomonas distinguishes regulatory and target genes
-
Eriksson, M., Moseley, J.L., Tottey, S., Del Campo, J.A., Quinn, J., Kim, Y., and Merchant, S. (2004). Genetic dissection of nutritional copper signaling in Chlamydomonas distinguishes regulatory and target genes. Genetics 168: 795-807.
-
(2004)
Genetics
, vol.168
, pp. 795-807
-
-
Eriksson, M.1
Moseley, J.L.2
Tottey, S.3
del Campo, J.A.4
Quinn, J.5
Kim, Y.6
Merchant, S.7
-
10
-
-
33749631536
-
Displacement of histones at promoters of Saccharomyces cerevisiae heat shock genes is differentially associated with histone H3 acetylation
-
Erkina, T.Y., and Erkine, A.M. (2006). Displacement of histones at promoters of Saccharomyces cerevisiae heat shock genes is differentially associated with histone H3 acetylation. Mol. Cell. Biol. 26: 7587-7600.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 7587-7600
-
-
Erkina, T.Y.1
Erkine, A.M.2
-
11
-
-
77950483916
-
Functional interplay between chromatin remodeling complexes RSC, SWI/SNF and ISWI in regulation of yeast heat shock genes
-
Erkina, T.Y., Zou, Y., Freeling, S., Vorobyev, V.I., and Erkine, A.M. (2010). Functional interplay between chromatin remodeling complexes RSC, SWI/SNF and ISWI in regulation of yeast heat shock genes. Nucleic Acids Res. 38: 1441-1449.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 1441-1449
-
-
Erkina, T.Y.1
Zou, Y.2
Freeling, S.3
Vorobyev, V.I.4
Erkine, A.M.5
-
12
-
-
73949083507
-
Heat-shock factor 1 controls genome-wide acetylation in heat-shocked cells
-
Fritah, S., Col, E., Boyault, C., Govin, J., Sadoul, K., Chiocca, S., Christians, E., Khochbin, S., Jolly, C., and Vourc'h, C. (2009). Heat-shock factor 1 controls genome-wide acetylation in heat-shocked cells. Mol. Biol. Cell 20: 4976-4984.
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 4976-4984
-
-
Fritah, S.1
Col, E.2
Boyault, C.3
Govin, J.4
Sadoul, K.5
Chiocca, S.6
Christians, E.7
Khochbin, S.8
Jolly, C.9
Vourc'h, C.10
-
13
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
Giresi, P.G., Kim, J., McDaniell, R.M., Iyer, V.R., and Lieb, J.D. (2007). FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res. 17: 877-885.
-
(2007)
Genome Res
, vol.17
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
14
-
-
0023042758
-
Sequence, evolution and differential expression of the two genes encoding variant small subunits of ribulose bisphosphate carboxylase/oxygenase in Chlamydomonas reinhardtii
-
Goldschmidt-Clermont, M., and Rahire, M. (1986). Sequence, evolution and differential expression of the two genes encoding variant small subunits of ribulose bisphosphate carboxylase/oxygenase in Chlamydomonas reinhardtii. J. Mol. Biol. 191: 421-432.
-
(1986)
J. Mol. Biol
, vol.191
, pp. 421-432
-
-
Goldschmidt-Clermont, M.1
Rahire, M.2
-
16
-
-
0036809333
-
SHsps and their role in the chaperone network
-
Haslbeck, M. (2002). sHsps and their role in the chaperone network. Cell. Mol. Life Sci. 59: 1649-1657.
-
(2002)
Cell. Mol. Life Sci
, vol.59
, pp. 1649-1657
-
-
Haslbeck, M.1
-
17
-
-
34249744467
-
Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin
-
Kodama, Y., Nagaya, S., Shinmyo, A., and Kato, K. (2007). Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin. Plant Cell Physiol. 48: 459-470.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 459-470
-
-
Kodama, Y.1
Nagaya, S.2
Shinmyo, A.3
Kato, K.4
-
18
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. (2007). Chromatin modifications and their function. Cell 128: 693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
19
-
-
70450277187
-
SAGA and Rpd3 chromatin modification complexes dynamically regulate heat shock gene structure and expression
-
Kremer, S.B., and Gross, D.S. (2009). SAGA and Rpd3 chromatin modification complexes dynamically regulate heat shock gene structure and expression. J. Biol. Chem. 284: 32914-32931.
-
(2009)
J. Biol. Chem
, vol.284
, pp. 32914-32931
-
-
Kremer, S.B.1
Gross, D.S.2
-
20
-
-
0037524702
-
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: Linking transcriptional elongation to histone methylation
-
Krogan, N.J., Dover, J., Wood, A., Schneider, J., Heidt, J., Boateng, M.A., Dean, K., Ryan, O.W., Golshani, A., Johnston, M., Greenblatt, J.F., and Shilatifard, A. (2003). The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: Linking transcriptional elongation to histone methylation. Mol. Cell 11: 721-729.
-
(2003)
Mol. Cell
, vol.11
, pp. 721-729
-
-
Krogan, N.J.1
Dover, J.2
Wood, A.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Dean, K.7
Ryan, O.W.8
Golshani, A.9
Johnston, M.10
Greenblatt, J.F.11
Shilatifard, A.12
-
21
-
-
29444433851
-
A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element
-
Kropat, J., Tottey, S., Birkenbihl, R.P., Depége, N., Huijser, P., and Merchant, S. (2005). A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element. Proc. Natl. Acad. Sci. USA 102: 18730-18735.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18730-18735
-
-
Kropat, J.1
Tottey, S.2
Birkenbihl, R.P.3
Depége, N.4
Huijser, P.5
Merchant, S.6
-
22
-
-
0036591878
-
The many faces of histone lysine methylation
-
Lachner, M., and Jenuwein, T. (2002). The many faces of histone lysine methylation. Curr. Opin. Cell Biol. 14: 286-298.
-
(2002)
Curr. Opin. Cell Biol
, vol.14
, pp. 286-298
-
-
Lachner, M.1
Jenuwein, T.2
-
23
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genome-wide
-
Lee, C.K., Shibata, Y., Rao, B., Strahl, B.D., and Lieb, J.D. (2004). Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat. Genet. 36: 900-905.
-
(2004)
Nat. Genet
, vol.36
, pp. 900-905
-
-
Lee, C.K.1
Shibata, Y.2
Rao, B.3
Strahl, B.D.4
Lieb, J.D.5
-
24
-
-
0029379547
-
Derepression of the activity of genetically engineered heat shock factor causes constitutive synthesis of heat shock proteins and increased thermotolerance in transgenic Arabidopsis
-
Lee, J.H., Hübel, A., and Schöffl, F. (1995). Derepression of the activity of genetically engineered heat shock factor causes constitutive synthesis of heat shock proteins and increased thermotolerance in transgenic Arabidopsis. Plant J. 8: 603-612.
-
(1995)
Plant J
, vol.8
, pp. 603-612
-
-
Lee, J.H.1
Hübel, A.2
Schöffl, F.3
-
25
-
-
34748826166
-
A high-resolution atlas of nucleosome occupancy in yeast
-
Lee, W., Tillo, D., Bray, N., Morse, R.H., Davis, R.W., Hughes, T.R., and Nislow, C. (2007). A high-resolution atlas of nucleosome occupancy in yeast. Nat. Genet. 39: 1235-1244.
-
(2007)
Nat. Genet
, vol.39
, pp. 1235-1244
-
-
Lee, W.1
Tillo, D.2
Bray, N.3
Morse, R.H.4
Davis, R.W.5
Hughes, T.R.6
Nislow, C.7
-
26
-
-
33847070442
-
The role of chromatin during transcription
-
Li, B., Carey, M., and Workman, J.L. (2007). The role of chromatin during transcription. Cell 128: 707-719.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
27
-
-
33745809637
-
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
-
Li, H., Ilin, S., Wang, W., Duncan, E.M., Wysocka, J., Allis, C.D., and Patel, D.J. (2006). Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature 442: 91-95.
-
(2006)
Nature
, vol.442
, pp. 91-95
-
-
Li, H.1
Ilin, S.2
Wang, W.3
Duncan, E.M.4
Wysocka, J.5
Allis, C.D.6
Patel, D.J.7
-
28
-
-
14844293494
-
J-domain protein CDJ2 and HSP70B are a plastidic chaperone pair that interacts with vesicle-inducing protein in plastids 1
-
Liu, C., Willmund, F., Whitelegge, J.P., Hawat, S., Knapp, B., Lodha, M., and Schroda, M. (2005). J-domain protein CDJ2 and HSP70B are a plastidic chaperone pair that interacts with vesicle-inducing protein in plastids 1. Mol. Biol. Cell 16: 1165-1177.
-
(2005)
Mol. Biol. Cell
, vol.16
, pp. 1165-1177
-
-
Liu, C.1
Willmund, F.2
Whitelegge, J.P.3
Hawat, S.4
Knapp, B.5
Lodha, M.6
Schroda, M.7
-
29
-
-
26844485822
-
Analysis of chromatin structure in the control regions of the Chlamydomonas HSP70A and RBCS2 genes
-
Lodha, M., and Schroda, M. (2005). Analysis of chromatin structure in the control regions of the Chlamydomonas HSP70A and RBCS2 genes. Plant Mol. Biol. 59: 501-513.
-
(2005)
Plant Mol. Biol
, vol.59
, pp. 501-513
-
-
Lodha, M.1
Schroda, M.2
-
30
-
-
40649109127
-
A new assay for promoter analysis in Chlamydomonas reveals roles for heat shock elements and the TATA box in HSP70A promoter-mediated activation of transgene expression
-
Lodha, M., Schulz-Raffelt, M., and Schroda, M. (2008). A new assay for promoter analysis in Chlamydomonas reveals roles for heat shock elements and the TATA box in HSP70A promoter-mediated activation of transgene expression. Eukaryot. Cell 7: 172-176.
-
(2008)
Eukaryot. Cell
, vol.7
, pp. 172-176
-
-
Lodha, M.1
Schulz-Raffelt, M.2
Schroda, M.3
-
31
-
-
0037381213
-
Structure and dynamic behavior of nucleosomes
-
Luger, K. (2003). Structure and dynamic behavior of nucleosomes. Curr. Opin. Genet. Dev. 13: 127-135.
-
(2003)
Curr. Opin. Genet. Dev
, vol.13
, pp. 127-135
-
-
Luger, K.1
-
32
-
-
0022641081
-
Regulation by copper of the expression of plastocyanin and cytochrome c552 in Chlamydomonas reinhardi
-
Merchant, S., and Bogorad, L. (1986). Regulation by copper of the expression of plastocyanin and cytochrome c552 in Chlamydomonas reinhardi. Mol. Cell. Biol. 6: 462-469.
-
(1986)
Mol. Cell. Biol
, vol.6
, pp. 462-469
-
-
Merchant, S.1
Bogorad, L.2
-
33
-
-
0023405243
-
Metal ion regulated gene expression: Use of a plastocyanin-less mutant of Chlamydomonas reinhardtii to study the Cu(II)-dependent expression of cytochrome c-552
-
Merchant, S., and Bogorad, L. (1987). Metal ion regulated gene expression: Use of a plastocyanin-less mutant of Chlamydomonas reinhardtii to study the Cu(II)-dependent expression of cytochrome c-552. EMBO J. 6: 2531-2535.
-
(1987)
EMBO J
, vol.6
, pp. 2531-2535
-
-
Merchant, S.1
Bogorad, L.2
-
34
-
-
33746930863
-
Between a rock and a hard place: Trace element nutrition in Chlamydomonas
-
Merchant, S.S., Allen, M.D., Kropat, J., Moseley, J.L., Long, J.C., Tottey, S., and Terauchi, A.M. (2006). Between a rock and a hard place: Trace element nutrition in Chlamydomonas. Biochim. Biophys. Acta 1763: 578-594.
-
(2006)
Biochim. Biophys. Acta
, vol.1763
, pp. 578-594
-
-
Merchant, S.S.1
Allen, M.D.2
Kropat, J.3
Moseley, J.L.4
Long, J.C.5
Tottey, S.6
Terauchi, A.M.7
-
35
-
-
0034658505
-
The Crd1 gene encodes a putative di-iron enzyme required for photosystem I accumulation in copper deficiency and hypoxia in Chlamydomonas reinhardtii
-
Moseley, J., Quinn, J., Eriksson, M., and Merchant, S. (2000). The Crd1 gene encodes a putative di-iron enzyme required for photosystem I accumulation in copper deficiency and hypoxia in Chlamydomonas reinhardtii. EMBO J. 19: 2139-2151.
-
(2000)
EMBO J
, vol.19
, pp. 2139-2151
-
-
Moseley, J.1
Quinn, J.2
Eriksson, M.3
Merchant, S.4
-
36
-
-
0026608847
-
Structure of a gene encoding heat-shock protein HSP70 from the unicellular alga Chla-mydomonas reinhardtii
-
Müller, F.W., Igloi, G.L., and Beck, C.F. (1992). Structure of a gene encoding heat-shock protein HSP70 from the unicellular alga Chla-mydomonas reinhardtii. Gene 111: 165-173.
-
(1992)
Gene
, vol.111
, pp. 165-173
-
-
Müller, F.W.1
Igloi, G.L.2
Beck, C.F.3
-
37
-
-
0344022572
-
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
Ng, H.H., Robert, F., Young, R.A., and Struhl, K. (2003). Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell 11: 709-719.
-
(2003)
Mol. Cell
, vol.11
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
38
-
-
0034669210
-
The structural basis for the recognition of acetylated histone H4 by the bromodo-main of histone acetyltransferase gcn5p
-
Owen, D.J., Ornaghi, P., Yang, J.C., Lowe, N., Evans, P.R., Ballario, P., Neuhaus, D., Filetici, P., and Travers, A.A. (2000). The structural basis for the recognition of acetylated histone H4 by the bromodo-main of histone acetyltransferase gcn5p. EMBO J. 19: 6141-6149.
-
(2000)
EMBO J
, vol.19
, pp. 6141-6149
-
-
Owen, D.J.1
Ornaghi, P.2
Yang, J.C.3
Lowe, N.4
Evans, P.R.5
Ballario, P.6
Neuhaus, D.7
Filetici, P.8
Travers, A.A.9
-
39
-
-
0020184673
-
A regulatory upstream promoter element in the Drosophila hsp 70 heat-shock gene
-
Pelham, H.R. (1982). A regulatory upstream promoter element in the Drosophila hsp 70 heat-shock gene. Cell 30: 517-528.
-
(1982)
Cell
, vol.30
, pp. 517-528
-
-
Pelham, H.R.1
-
40
-
-
33745818717
-
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2
-
Peña, P.V., Davrazou, F., Shi, X., Walter, K.L., Verkhusha, V.V., Gozani, O., Zhao, R., and Kutateladze, T.G. (2006). Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature 442: 100-103.
-
(2006)
Nature
, vol.442
, pp. 100-103
-
-
Peña, P.V.1
Davrazou, F.2
Shi, X.3
Walter, K.L.4
Verkhusha, V.V.5
Gozani, O.6
Zhao, R.7
Kutateladze, T.G.8
-
41
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
Pokholok, D.K., et al. (2005). Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122: 517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
-
42
-
-
0029294085
-
Two copper-responsive elements associated with the Chlamydomonas Cyc6 gene function as targets for transcriptional activators
-
Quinn, J.M., and Merchant, S. (1995). Two copper-responsive elements associated with the Chlamydomonas Cyc6 gene function as targets for transcriptional activators. Plant Cell 7: 623-628.
-
(1995)
Plant Cell
, vol.7
, pp. 623-628
-
-
Quinn, J.M.1
Merchant, S.2
-
43
-
-
0031721060
-
Copper-responsive gene expression during adaptation to copper deficiency
-
Quinn, J.M., and Merchant, S. (1998). Copper-responsive gene expression during adaptation to copper deficiency. Methods Enzymol. 297: 263-279.
-
(1998)
Methods Enzymol
, vol.297
, pp. 263-279
-
-
Quinn, J.M.1
Merchant, S.2
-
44
-
-
0033553513
-
Induction of coproporphyrinogen oxidase in Chlamydomonas chloroplasts occurs via transcriptional regulation of Cpx1 mediated by copper response elements and increased translation from a copper deficiency-specific form of the transcript
-
Quinn, J.M., Nakamoto, S.S., and Merchant, S. (1999). Induction of coproporphyrinogen oxidase in Chlamydomonas chloroplasts occurs via transcriptional regulation of Cpx1 mediated by copper response elements and increased translation from a copper deficiency-specific form of the transcript. J. Biol. Chem. 274: 14444-14454.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 14444-14454
-
-
Quinn, J.M.1
Nakamoto, S.S.2
Merchant, S.3
-
45
-
-
0027452754
-
Regulation of heat shock factor trimer formation: Role of a conserved leucine zipper
-
Rabindran, S.K., Haroun, R.I., Clos, J., Wisniewski, J., and Wu, C. (1993). Regulation of heat shock factor trimer formation: Role of a conserved leucine zipper. Science 259: 230-234.
-
(1993)
Science
, vol.259
, pp. 230-234
-
-
Rabindran, S.K.1
Haroun, R.I.2
Clos, J.3
Wisniewski, J.4
Wu, C.5
-
46
-
-
0034515772
-
Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
-
Reid, J.L., Iyer, V.R., Brown, P.O., and Struhl, K. (2000). Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase. Mol. Cell 6: 1297-1307.
-
(2000)
Mol. Cell
, vol.6
, pp. 1297-1307
-
-
Reid, J.L.1
Iyer, V.R.2
Brown, P.O.3
Struhl, K.4
-
47
-
-
0038094502
-
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter
-
Reinke, H., and Hörz, W. (2003). Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol. Cell 11: 1599-1607.
-
(2003)
Mol. Cell
, vol.11
, pp. 1599-1607
-
-
Reinke, H.1
Hörz, W.2
-
48
-
-
6344270167
-
Global position and recruitment of HATs and HDACs in the yeast genome
-
Robert, F., Pokholok, D.K., Hannett, N.M., Rinaldi, N.J., Chandy, M., Rolfe, A., Workman, J.L., Gifford, D.K., and Young, R.A. (2004). Global position and recruitment of HATs and HDACs in the yeast genome. Mol. Cell 16: 199-209.
-
(2004)
Mol. Cell
, vol.16
, pp. 199-209
-
-
Robert, F.1
Pokholok, D.K.2
Hannett, N.M.3
Rinaldi, N.J.4
Chandy, M.5
Rolfe, A.6
Workman, J.L.7
Gifford, D.K.8
Young, R.A.9
-
49
-
-
33746851506
-
Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex
-
Ruthenburg, A.J., Wang, W., Graybosch, D.M., Li, H., Allis, C.D., Patel, D.J., and Verdine, G.L. (2006). Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex. Nat. Struct. Mol. Biol. 13: 704-712.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 704-712
-
-
Ruthenburg, A.J.1
Wang, W.2
Graybosch, D.M.3
Li, H.4
Allis, C.D.5
Patel, D.J.6
Verdine, G.L.7
-
50
-
-
0037179716
-
Active genes are tri-methylated at K4 of histone H3
-
Santos-Rosa, H., Schneider, R., Bannister, A.J., Sherriff, J., Bernstein, B.E., Emre, N.C., Schreiber, S.L., Mellor, J., and Kouzarides, T. (2002). Active genes are tri-methylated at K4 of histone H3. Nature 419: 407-411.
-
(2002)
Nature
, vol.419
, pp. 407-411
-
-
Santos-Rosa, H.1
Schneider, R.2
Bannister, A.J.3
Sherriff, J.4
Bernstein, B.E.5
Emre, N.C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
51
-
-
77956182394
-
An inducible artificial microRNA system for Chlamydomonas reinhardtii confirms a key role for heat shock factor 1 in regulating thermotolerance
-
Schmollinger, S., Strenkert, D., and Schroda, M. (2010). An inducible artificial microRNA system for Chlamydomonas reinhardtii confirms a key role for heat shock factor 1 in regulating thermotolerance. Curr. Genet. 56: 383-389.
-
(2010)
Curr. Genet
, vol.56
, pp. 383-389
-
-
Schmollinger, S.1
Strenkert, D.2
Schroda, M.3
-
52
-
-
1342268289
-
Histone H3 lysine 4 methyl-ation patterns in higher eukaryotic genes
-
Schneider, R., Bannister, A.J., Myers, F.A., Thorne, A.W., Crane-Robinson, C., and Kouzarides, T. (2004). Histone H3 lysine 4 methyl-ation patterns in higher eukaryotic genes. Nat. Cell Biol. 6: 73-77.
-
(2004)
Nat. Cell Biol
, vol.6
, pp. 73-77
-
-
Schneider, R.1
Bannister, A.J.2
Myers, F.A.3
Thorne, A.W.4
Crane-Robinson, C.5
Kouzarides, T.6
-
53
-
-
0036690768
-
Sequence elements within an HSP70 promoter counteract transcriptional transgene silencing in Chlamydomonas
-
Schroda, M., Beck, C.F., and Vallon, O. (2002). Sequence elements within an HSP70 promoter counteract transcriptional transgene silencing in Chlamydomonas. Plant J. 31: 445-455.
-
(2002)
Plant J
, vol.31
, pp. 445-455
-
-
Schroda, M.1
Beck, C.F.2
Vallon, O.3
-
54
-
-
0342680049
-
The HSP70A promoter as a tool for the improved expression of transgenes in Chlamydomonas
-
Schroda, M., Blöcker, D., and Beck, C.F. (2000). The HSP70A promoter as a tool for the improved expression of transgenes in Chlamydomonas. Plant J. 21: 121-131.
-
(2000)
Plant J
, vol.21
, pp. 121-131
-
-
Schroda, M.1
Blöcker, D.2
Beck, C.F.3
-
55
-
-
84882820039
-
Chaperones and proteases
-
D.B. Stern, ed (San Diego, CA: Academic Press)
-
Schroda, M., and Vallon, O. (2008). Chaperones and proteases. In The Chlamydomonas Sourcebook: Organellar and Metabolic Processes, 2nd ed, Vol. 2, D.B. Stern, ed (San Diego, CA: Academic Press), pp. 671-729.
-
(2008)
The Chlamydomonas Sourcebook: Organellar and Metabolic Processes
, vol.2
, pp. 671-729
-
-
Schroda, M.1
Vallon, O.2
-
56
-
-
35148813020
-
Heat shock factor 1 is a key regulator of the stress response in Chlamydomonas
-
Schulz-Raffelt, M., Lodha, M., and Schroda, M. (2007). Heat shock factor 1 is a key regulator of the stress response in Chlamydomonas. Plant J. 52: 286-295.
-
(2007)
Plant J
, vol.52
, pp. 286-295
-
-
Schulz-Raffelt, M.1
Lodha, M.2
Schroda, M.3
-
57
-
-
45849153073
-
The coactivators CBP/p300 and the histone chaperone NAP1 promote transcription-independent nu-cleosome eviction at the HTLV-1 promoter
-
Sharma, N., and Nyborg, J.K. (2008). The coactivators CBP/p300 and the histone chaperone NAP1 promote transcription-independent nu-cleosome eviction at the HTLV-1 promoter. Proc. Natl. Acad. Sci. USA 105: 7959-7963.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 7959-7963
-
-
Sharma, N.1
Nyborg, J.K.2
-
58
-
-
33745868054
-
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
-
Shi, X., et al. (2006). ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature 442: 96-99.
-
(2006)
Nature
, vol.442
, pp. 96-99
-
-
Shi, X.1
-
59
-
-
33751116960
-
Histone H3 Lys 4 methylation: Caught in a bind
-
Sims III R.J., and Reinberg, D. (2006). Histone H3 Lys 4 methylation: Caught in a bind? Genes Dev. 20: 2779-2786.
-
(2006)
Genes Dev
, vol.20
, pp. 2779-2786
-
-
Sims, R.J.1
Reinberg, D.2
-
60
-
-
79551650614
-
The CRR1 nutritional copper sensor in Chlamydomonas contains two distinct metal-responsive domains
-
Sommer, F., Kropat, J., Malasarn, D., Grossoehme, N.E., Chen, X., Giedroc, D.P., and Merchant, S.S. (2010). The CRR1 nutritional copper sensor in Chlamydomonas contains two distinct metal-responsive domains. Plant Cell 22: 4098-4113.
-
(2010)
Plant Cell
, vol.22
, pp. 4098-4113
-
-
Sommer, F.1
Kropat, J.2
Malasarn, D.3
Grossoehme, N.E.4
Chen, X.5
Giedroc, D.P.6
Merchant, S.S.7
-
61
-
-
0023643235
-
Heat shock factor is regulated differently in yeast and HeLa cells
-
Sorger, P.K., Lewis, M.J., and Pelham, H.R. (1987). Heat shock factor is regulated differently in yeast and HeLa cells. Nature 329: 81-84.
-
(1987)
Nature
, vol.329
, pp. 81-84
-
-
Sorger, P.K.1
Lewis, M.J.2
Pelham, H.R.3
-
62
-
-
0024852809
-
Trimerization of a yeast tran-scriptional activator via a coiled-coil motif
-
Sorger, P.K., and Nelson, H.C. (1989). Trimerization of a yeast tran-scriptional activator via a coiled-coil motif. Cell 59: 807-813.
-
(1989)
Cell
, vol.59
, pp. 807-813
-
-
Sorger, P.K.1
Nelson, H.C.2
-
63
-
-
0024282785
-
Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation
-
Sorger, P.K., and Pelham, H.R. (1988). Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation. Cell 54: 855-864.
-
(1988)
Cell
, vol.54
, pp. 855-864
-
-
Sorger, P.K.1
Pelham, H.R.2
-
64
-
-
0347364625
-
Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide
-
Tottey, S., Block, M.A., Allen, M., Westergren, T., Albrieux, C., Scheller, H.V., Merchant, S., and Jensen, P.E. (2003). Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide. Proc. Natl. Acad. Sci. USA 100: 16119-16124.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 16119-16124
-
-
Tottey, S.1
Block, M.A.2
Allen, M.3
Westergren, T.4
Albrieux, C.5
Scheller, H.V.6
Merchant, S.7
Jensen, P.E.8
-
65
-
-
31444441661
-
Monomethyl histone H3 lysine 4 as an epigenetic mark for silenced euchromatin in Chlamydomonas
-
van Dijk, K., Marley, K.E., Jeong, B.R., Xu, J., Hesson, J., Cerny, R.L., Waterborg, J.H., and Cerutti, H. (2005). Monomethyl histone H3 lysine 4 as an epigenetic mark for silenced euchromatin in Chlamydomonas. Plant Cell 17: 2439-2453.
-
(2005)
Plant Cell
, vol.17
, pp. 2439-2453
-
-
van Dijk, K.1
Marley, K.E.2
Jeong, B.R.3
Xu, J.4
Hesson, J.5
Cerny, R.L.6
Waterborg, J.H.7
Cerutti, H.8
-
66
-
-
33750210385
-
Identification of a plastid response element that acts as an enhancer within the Chlamydomonas HSP70A promoter
-
von Gromoff, E.D., Schroda, M., Oster, U., and Beck, C.F. (2006). Identification of a plastid response element that acts as an enhancer within the Chlamydomonas HSP70A promoter. Nucleic Acids Res. 34: 4767-4779.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4767-4779
-
-
von Gromoff, E.D.1
Schroda, M.2
Oster, U.3
Beck, C.F.4
-
67
-
-
0024722271
-
Three light-inducible heat shock genes of Chlamydomonas reinhardtii
-
von Gromoff, E.D., Treier, U., and Beck, C.F. (1989). Three light-inducible heat shock genes of Chlamydomonas reinhardtii. Mol. Cell. Biol. 9: 3911-3918.
-
(1989)
Mol. Cell. Biol
, vol.9
, pp. 3911-3918
-
-
von Gromoff, E.D.1
Treier, U.2
Beck, C.F.3
-
68
-
-
0029379757
-
Histones of Chlamydomonas reinhardtii. Synthesis, acetylation, and methylation
-
Waterborg, J.H., Robertson, A.J., Tatar, D.L., Borza, C.M., and Davie, J.R. (1995). Histones of Chlamydomonas reinhardtii. Synthesis, acetylation, and methylation. Plant Physiol. 109: 393-407.
-
(1995)
Plant Physiol
, vol.109
, pp. 393-407
-
-
Waterborg, J.H.1
Robertson, A.J.2
Tatar, D.L.3
Borza, C.M.4
Davie, J.R.5
-
69
-
-
33644666048
-
HEAT SHOCK PROTEIN 90C is a bona fide Hsp90 that interacts with plastidic HSP70B in Chlamy-domonas reinhardtii
-
Willmund, F., and Schroda, M. (2005). HEAT SHOCK PROTEIN 90C is a bona fide Hsp90 that interacts with plastidic HSP70B in Chlamy-domonas reinhardtii. Plant Physiol. 138: 2310-2322.
-
(2005)
Plant Physiol
, vol.138
, pp. 2310-2322
-
-
Willmund, F.1
Schroda, M.2
-
70
-
-
0017899881
-
Interchangeable copper and iron proteins in algal photosynthesis. Studies on plastocyanin and cytochrome c-552 in Chlamydomonas
-
Wood, P.M. (1978). Interchangeable copper and iron proteins in algal photosynthesis. Studies on plastocyanin and cytochrome c-552 in Chlamydomonas. Eur. J. Biochem. 87: 9-19.
-
(1978)
Eur. J. Biochem
, vol.87
, pp. 9-19
-
-
Wood, P.M.1
-
71
-
-
77954487796
-
Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b
-
Zeng, L., Zhang, Q., Li, S., Plotnikov, A.N., Walsh, M.J., and Zhou, M.M. (2010). Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b. Nature 466: 258-262.
-
(2010)
Nature
, vol.466
, pp. 258-262
-
-
Zeng, L.1
Zhang, Q.2
Li, S.3
Plotnikov, A.N.4
Walsh, M.J.5
Zhou, M.M.6
-
72
-
-
0038148033
-
Heat stress-dependent DNA binding of Arabidopsis heat shock transcription factor HSF1 to heat shock gene promoters in Arabidopsis suspension culture cells in vivo
-
Zhang, L., Lohmann, C., Prändl, R., and Schöffl, F. (2003). Heat stress-dependent DNA binding of Arabidopsis heat shock transcription factor HSF1 to heat shock gene promoters in Arabidopsis suspension culture cells in vivo. Biol. Chem. 384: 959-963.
-
(2003)
Biol. Chem
, vol.384
, pp. 959-963
-
-
Zhang, L.1
Lohmann, C.2
Prändl, R.3
Schöffl, F.4
-
73
-
-
26444545490
-
Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density
-
Zhao, J., Herrera-Diaz, J., and Gross, D.S. (2005). Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density. Mol. Cell. Biol. 25: 8985-8999.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 8985-8999
-
-
Zhao, J.1
Herrera-Diaz, J.2
Gross, D.S.3
|