-
1
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
Alonso, J.M., et al. (2003). Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
-
2
-
-
27244458549
-
Virus induction of heat shock protein 70 reflects a general response to protein accumulation in the plant cytosol
-
Aparicio, F., Thomas, C.L., Lederer, C., Niu, Y., Wang, D., and Maule, A.J. (2005). Virus induction of heat shock protein 70 reflects a general response to protein accumulation in the plant cytosol. Plant Physiol. 138: 529-536.
-
(2005)
Plant Physiol
, vol.138
, pp. 529-536
-
-
Aparicio, F.1
Thomas, C.L.2
Lederer, C.3
Niu, Y.4
Wang, D.5
Maule, A.J.6
-
3
-
-
0030465409
-
Induction of HSP70 and polyubiquitin expression associated with plant virus replication
-
Aranda, M.A., Escaler, M., Wang, D., and Maule, A.J. (1996). Induction of HSP70 and polyubiquitin expression associated with plant virus replication. Proc. Natl. Acad. Sci. USA 93: 15289-15293.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 15289-15293
-
-
Aranda, M.A.1
Escaler, M.2
Wang, D.3
Maule, A.J.4
-
4
-
-
33745817833
-
UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis
-
Arciga-Reyes, L., Wootton, L., Kieffer, M., and Davies, B. (2006). UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J. 47: 480-489.
-
(2006)
Plant J
, vol.47
, pp. 480-489
-
-
Arciga-Reyes, L.1
Wootton, L.2
Kieffer, M.3
Davies, B.4
-
5
-
-
33947532255
-
Role of heat stress transcription factor HsfA5 as specific repressor of HsfA4
-
Baniwal, S.K., Chan, K.Y., Scharf, K.D., and Nover, L. (2007). Role of heat stress transcription factor HsfA5 as specific repressor of HsfA4. J. Biol. Chem. 282: 3605-3613.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 3605-3613
-
-
Baniwal, S.K.1
Chan, K.Y.2
Scharf, K.D.3
Nover, L.4
-
6
-
-
0001677717
-
Controlling the false discovery rate-a practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate-a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57: 289-300.
-
(1995)
J. R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
7
-
-
2942633709
-
Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1
-
Bharti, K., Von Koskull-Doring, P., Bharti, S., Kumar, P., Tintschl- Korbitzer, A., Treuter, E., and Nover, L. (2004). Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1. Plant Cell 16: 1521-1535.
-
(2004)
Plant Cell
, vol.16
, pp. 1521-1535
-
-
Bharti, K.1
Von Koskull-Doring, P.2
Bharti, S.3
Kumar, P.4
Tintschl- Korbitzer, A.5
Treuter, E.6
Nover, L.7
-
8
-
-
12744274644
-
Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana
-
Busch, W., Wunderlich, M., and Schoffl, F. (2005). Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J. 41: 1-14.
-
(2005)
Plant J
, vol.41
, pp. 1-14
-
-
Busch, W.1
Wunderlich, M.2
Schoffl, F.3
-
9
-
-
0025967766
-
Is hsp70 the cellular thermometer?
-
Craig, E.A., and Gross, C.A. (1991). Is hsp70 the cellular thermometer? Trends Biochem. Sci. 16: 135-140.
-
(1991)
Trends Biochem. Sci
, vol.16
, pp. 135-140
-
-
Craig, E.A.1
Gross, C.A.2
-
10
-
-
1242342128
-
A cysteine-rich plant protein potentiates Potyvirus movement through an interaction with the virus genome-linked protein VPg
-
Dunoyer, P., Thomas, C., Harrison, S., Revers, F., and Maule, A. (2004). A cysteine-rich plant protein potentiates Potyvirus movement through an interaction with the virus genome-linked protein VPg. J. Virol. 78: 2301-2309.
-
(2004)
J. Virol
, vol.78
, pp. 2301-2309
-
-
Dunoyer, P.1
Thomas, C.2
Harrison, S.3
Revers, F.4
Maule, A.5
-
11
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R.C., et al. (2004). Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5: R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
-
12
-
-
36048931817
-
-
He, Z.S., Xie, R., Zou, H.S., Wang, Y.Z., Zhu, J.B., and Yu, G.Q. (2007). Structure and alternative splicing of a heat shock transcription factor gene, MsHSF1, in Medicago sativa. Biochem. Biophys. Res. Commun. 364: 1056-1061.
-
He, Z.S., Xie, R., Zou, H.S., Wang, Y.Z., Zhu, J.B., and Yu, G.Q. (2007). Structure and alternative splicing of a heat shock transcription factor gene, MsHSF1, in Medicago sativa. Biochem. Biophys. Res. Commun. 364: 1056-1061.
-
-
-
-
13
-
-
0342803566
-
pGreen: A versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation
-
Hellens, R.P., Edwards, E.A., Leyland, N.R., Bean, S., and Mullineaux, P.M. (2000). pGreen: A versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation. Plant Mol. Biol. 42: 819-832.
-
(2000)
Plant Mol. Biol
, vol.42
, pp. 819-832
-
-
Hellens, R.P.1
Edwards, E.A.2
Leyland, N.R.3
Bean, S.4
Mullineaux, P.M.5
-
14
-
-
34547659870
-
Context analysis of termination codons in mRNA that are recognized by plant NMD
-
Hori, K., and Watanabe, Y. (2007). Context analysis of termination codons in mRNA that are recognized by plant NMD. Plant Cell Physiol. 48: 1072-1078.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 1072-1078
-
-
Hori, K.1
Watanabe, Y.2
-
15
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R.A., Hobbs, B., Collin, F., Beazer-Barclay, Y.D., Antonellis, K.J., Scherf, U., and Speed, T.P. (2003). Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
16
-
-
17044404640
-
An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants
-
Iwata, Y., and Koizumi, N. (2005). An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants. Proc. Natl. Acad. Sci. USA 102: 5280-5285.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5280-5285
-
-
Iwata, Y.1
Koizumi, N.2
-
17
-
-
38349125022
-
Translational control of intron splicing in eukaryotes
-
Jaillon, O., et al. (2008). Translational control of intron splicing in eukaryotes. Nature 451: 359-362.
-
(2008)
Nature
, vol.451
, pp. 359-362
-
-
Jaillon, O.1
-
18
-
-
0038540537
-
Misfolded plant virus proteins: Elicitors and targets of ubiquitylation
-
Jockusch, H., and Wiegand, C. (2003). Misfolded plant virus proteins: Elicitors and targets of ubiquitylation. FEBS Lett. 545: 229-232.
-
(2003)
FEBS Lett
, vol.545
, pp. 229-232
-
-
Jockusch, H.1
Wiegand, C.2
-
19
-
-
0034979415
-
Mutants of tobacco mosaic virus with temperature-sensitive coat proteins induce heat shock response in tobacco leaves
-
Jockusch, H., Wiegand, C., Mersch, B., and Rajes, D. (2001). Mutants of tobacco mosaic virus with temperature-sensitive coat proteins induce heat shock response in tobacco leaves. Mol. Plant Microbe Interact. 14: 914-917.
-
(2001)
Mol. Plant Microbe Interact
, vol.14
, pp. 914-917
-
-
Jockusch, H.1
Wiegand, C.2
Mersch, B.3
Rajes, D.4
-
20
-
-
0032422704
-
Specificity of resistance to pea seed-borne mosaic potyvirus in transgenic peas expressing the viral replicase (Nlb) gene
-
Jones, A.L., Johansen, I.E., Bean, S.J., Bach, I., and Maule, A.J. (1998). Specificity of resistance to pea seed-borne mosaic potyvirus in transgenic peas expressing the viral replicase (Nlb) gene. J. Gen. Virol. 79: 3129-3137.
-
(1998)
J. Gen. Virol
, vol.79
, pp. 3129-3137
-
-
Jones, A.L.1
Johansen, I.E.2
Bean, S.J.3
Bach, I.4
Maule, A.J.5
-
21
-
-
0036581417
-
GATEWAY vectors for Agrobacterium-mediated plant transformation
-
Karimi, M., Inze, D., and Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7: 193-195.
-
(2002)
Trends Plant Sci
, vol.7
, pp. 193-195
-
-
Karimi, M.1
Inze, D.2
Depicker, A.3
-
22
-
-
44649127573
-
Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay
-
Kerenyi, Z., Merai, Z., Hiripi, L., Benkovics, A., Gyula, P., Lacomme, C., Barta, E., Nagy, F., and Silhavy, D. (2008). Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. EMBO J. 27: 1585-1595.
-
(2008)
EMBO J
, vol.27
, pp. 1585-1595
-
-
Kerenyi, Z.1
Merai, Z.2
Hiripi, L.3
Benkovics, A.4
Gyula, P.5
Lacomme, C.6
Barta, E.7
Nagy, F.8
Silhavy, D.9
-
23
-
-
33845622065
-
Both introns and long 3'-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
-
Kertesz, S., Kerenyi, Z., Merai, Z., Bartos, I., Palfy, T., Barta, E., and Silhavy, D. (2006). Both introns and long 3'-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res. 34: 6147-6157.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6147-6157
-
-
Kertesz, S.1
Kerenyi, Z.2
Merai, Z.3
Bartos, I.4
Palfy, T.5
Barta, E.6
Silhavy, D.7
-
24
-
-
34247200577
-
The AtGenExpress global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
-
Kilian, J., Whitehead, D., Horak, J., Wanke, D., Weinl, S., Batistic, O., D'Angelo, C., Bornberg-Bauer, E., Kudla, J., and Harter, K. (2007). The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J. 50: 347-363.
-
(2007)
Plant J
, vol.50
, pp. 347-363
-
-
Kilian, J.1
Whitehead, D.2
Horak, J.3
Wanke, D.4
Weinl, S.5
Batistic, O.6
D'Angelo, C.7
Bornberg-Bauer, E.8
Kudla, J.9
Harter, K.10
-
25
-
-
38949208025
-
Core genome responses involved in acclimation to high temperature
-
Larkindale, J., and Vierling, E. (2008). Core genome responses involved in acclimation to high temperature. Plant Physiol. 146: 748-761.
-
(2008)
Plant Physiol
, vol.146
, pp. 748-761
-
-
Larkindale, J.1
Vierling, E.2
-
26
-
-
0037327305
-
Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes
-
Martinez, I.M., and Chrispeels, M.J. (2003). Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes. Plant Cell 15: 561-576.
-
(2003)
Plant Cell
, vol.15
, pp. 561-576
-
-
Martinez, I.M.1
Chrispeels, M.J.2
-
27
-
-
23144451257
-
ERAD: The long road to destruction
-
Meusser, B., Hirsch, C., Jarosch, E., and Sommer, T. (2005). ERAD: The long road to destruction. Nat. Cell Biol. 7: 766-772.
-
(2005)
Nat. Cell Biol
, vol.7
, pp. 766-772
-
-
Meusser, B.1
Hirsch, C.2
Jarosch, E.3
Sommer, T.4
-
28
-
-
33748143367
-
Could heat shock transcription factors function as hydrogen peroxide sensors in plants?
-
Miller, G., and Mittler, R. (2006). Could heat shock transcription factors function as hydrogen peroxide sensors in plants? Ann. Bot. (Lond.) 98: 279-288.
-
(2006)
Ann. Bot. (Lond.)
, vol.98
, pp. 279-288
-
-
Miller, G.1
Mittler, R.2
-
29
-
-
0032535245
-
Regulation of the heat shock transcriptional response: Cross talk between a family of heat shock factors, molecular chaperones, and negative regulators
-
Morimoto, R.I. (1998). Regulation of the heat shock transcriptional response: Cross talk between a family of heat shock factors, molecular chaperones, and negative regulators. Genes Dev. 12: 3788-3796.
-
(1998)
Genes Dev
, vol.12
, pp. 3788-3796
-
-
Morimoto, R.I.1
-
30
-
-
33750551504
-
Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress
-
Nishizawa, A., Yabuta, Y., Yoshida, E., Maruta, T., Yoshimura, K., and Shigeoka, S. (2006). Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress. Plant J. 48: 535-547.
-
(2006)
Plant J
, vol.48
, pp. 535-547
-
-
Nishizawa, A.1
Yabuta, Y.2
Yoshida, E.3
Maruta, T.4
Yoshimura, K.5
Shigeoka, S.6
-
31
-
-
0034804489
-
Arabidopsis and the heat stress transcription factor world: How many heat stress transcription factors do we need?
-
Nover, L., Bharti, K., Doring, P., Mishra, S.K., Ganguli, A., and Scharf, K.D. (2001). Arabidopsis and the heat stress transcription factor world: How many heat stress transcription factors do we need? Cell Stress Chaperones 6: 177-189.
-
(2001)
Cell Stress Chaperones
, vol.6
, pp. 177-189
-
-
Nover, L.1
Bharti, K.2
Doring, P.3
Mishra, S.K.4
Ganguli, A.5
Scharf, K.D.6
-
32
-
-
0029411737
-
Open reading frames of turnip crinkle virus involved in satellite symptom expression and incompatibility with Arabidopsis thaliana ecotype Dijon
-
Oh, J.W., Kong, Q.Z., Song, C.Z., Carpenter, C.D., and Simon, A.E. (1995). Open reading frames of turnip crinkle virus involved in satellite symptom expression and incompatibility with Arabidopsis thaliana ecotype Dijon. Mol. Plant Microbe Interact. 8: 979-987.
-
(1995)
Mol. Plant Microbe Interact
, vol.8
, pp. 979-987
-
-
Oh, J.W.1
Kong, Q.Z.2
Song, C.Z.3
Carpenter, C.D.4
Simon, A.E.5
-
33
-
-
33645293437
-
CHIP-mediated stress recovery by sequential ubiquitination of substrates and Hsp70
-
Qian, S.B., McDonough, H., Boellmann, F., Cyr, D.M., and Patterson, C. (2006). CHIP-mediated stress recovery by sequential ubiquitination of substrates and Hsp70. Nature 440: 551-555.
-
(2006)
Nature
, vol.440
, pp. 551-555
-
-
Qian, S.B.1
McDonough, H.2
Boellmann, F.3
Cyr, D.M.4
Patterson, C.5
-
34
-
-
34250899722
-
Signal integration in the endoplasmic reticulum unfolded protein response. Nat.Rev. Mol.CellBiol
-
Ron, D., and Walter, P. (2007). Signal integration in the endoplasmic reticulum unfolded protein response. Nat.Rev. Mol.CellBiol.8: 519-529.
-
(2007)
, vol.8
, pp. 519-529
-
-
Ron, D.1
Walter, P.2
-
35
-
-
33646346645
-
The heat stress transcription factor HsfA2 serves as a regulatory amplifier of a subset of genes in the heat stress response in Arabidopsis
-
Schramm, F., Ganguli, A., Kiehlmann, E., Englich, G., Walch, D., and von Koskull-Doring, P. (2006). The heat stress transcription factor HsfA2 serves as a regulatory amplifier of a subset of genes in the heat stress response in Arabidopsis. Plant Mol. Biol. 60: 759-772.
-
(2006)
Plant Mol. Biol
, vol.60
, pp. 759-772
-
-
Schramm, F.1
Ganguli, A.2
Kiehlmann, E.3
Englich, G.4
Walch, D.5
von Koskull-Doring, P.6
-
36
-
-
37749025808
-
A cascade of transcription factor DREB2A and heat stress transcription factor HsfA3 regulates the heat stress response of Arabidopsis
-
Schramm, F., Larkindale, J., Kiehlmann, E., Ganguli, A., Englich, G., Vierling, E., and von Koskull-Doring, P. (2008). A cascade of transcription factor DREB2A and heat stress transcription factor HsfA3 regulates the heat stress response of Arabidopsis. Plant J. 53: 264-274.
-
(2008)
Plant J
, vol.53
, pp. 264-274
-
-
Schramm, F.1
Larkindale, J.2
Kiehlmann, E.3
Ganguli, A.4
Englich, G.5
Vierling, E.6
von Koskull-Doring, P.7
-
37
-
-
21644440363
-
Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling
-
Shimodaira, H. (2004). Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling. Ann. Stat. 32: 2616-2641.
-
(2004)
Ann. Stat
, vol.32
, pp. 2616-2641
-
-
Shimodaira, H.1
-
39
-
-
34347265817
-
Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways
-
Swindell, W.R., Huebner, M., and Weber, A.P. (2007). Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways. BMC Genomics 8: 125.
-
(2007)
BMC Genomics
, vol.8
, pp. 125
-
-
Swindell, W.R.1
Huebner, M.2
Weber, A.P.3
-
40
-
-
12144291195
-
MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
Thimm, O., Blasing, O., Gibon, Y., Nagel, A., Meyer, S., Kruger, P., Selbig, J., Muller, L.A., Rhee, S.Y., and Stitt, M. (2004). MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37: 914-939.
-
(2004)
Plant J
, vol.37
, pp. 914-939
-
-
Thimm, O.1
Blasing, O.2
Gibon, Y.3
Nagel, A.4
Meyer, S.5
Kruger, P.6
Selbig, J.7
Muller, L.A.8
Rhee, S.Y.9
Stitt, M.10
-
41
-
-
0346736509
-
Misfolded proteins are competent to mediate a subset of the responses to heat shock in Saccharomyces cerevisiae
-
Trotter, E.W., Kao, C.M., Berenfeld, L., Botstein, D., Petsko, G.A., and Gray, J.V. (2002). Misfolded proteins are competent to mediate a subset of the responses to heat shock in Saccharomyces cerevisiae. J. Biol. Chem. 277: 44817-44825.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 44817-44825
-
-
Trotter, E.W.1
Kao, C.M.2
Berenfeld, L.3
Botstein, D.4
Petsko, G.A.5
Gray, J.V.6
-
42
-
-
33846971236
-
Cellular response to unfolded proteins in the endoplasmic reticulum of plants
-
Urade, R. (2007). Cellular response to unfolded proteins in the endoplasmic reticulum of plants. FEBS J. 274: 1152-1171.
-
(2007)
FEBS J
, vol.274
, pp. 1152-1171
-
-
Urade, R.1
-
43
-
-
33646484347
-
Genomewide comparative analysis of alternative splicing in plants
-
Wang, B.B., and Brendel, V. (2006). Genomewide comparative analysis of alternative splicing in plants. Proc. Natl. Acad. Sci. USA 103: 7175-7180.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 7175-7180
-
-
Wang, B.B.1
Brendel, V.2
-
44
-
-
0037261908
-
Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants
-
Whitham, S.A., Quan, S., Chang, H.S., Cooper, B., Estes, B., Zhu, T., Wang, X., and Hou, Y.M. (2003). Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants. Plant J. 33: 271-283.
-
(2003)
Plant J
, vol.33
, pp. 271-283
-
-
Whitham, S.A.1
Quan, S.2
Chang, H.S.3
Cooper, B.4
Estes, B.5
Zhu, T.6
Wang, X.7
Hou, Y.M.8
|