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Volumn 111, Issue 21, 2014, Pages 7507-7508

Unveiling translocation intermediates of RNA polymerase

Author keywords

[No Author keywords available]

Indexed keywords

DNA BASE; RNA POLYMERASE;

EID: 84901649769     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1406413111     Document Type: Note
Times cited : (6)

References (27)
  • 1
    • 77953711880 scopus 로고    scopus 로고
    • Translocation by multi-subunit RNA polymerases
    • Kireeva M, Kashlev M, Burton ZF (2010) Translocation by multi-subunit RNA polymerases. Biochim Biophys Acta 1799(5-6):389-401.
    • (2010) Biochim Biophys Acta , vol.1799 , Issue.5-6 , pp. 389-401
    • Kireeva, M.1    Kashlev, M.2    Burton, Z.F.3
  • 2
    • 70549108206 scopus 로고    scopus 로고
    • Macromolecular micromovements: How RNA polymerase translocates
    • Svetlov V, Nudler E (2009) Macromolecular micromovements: How RNA polymerase translocates. Curr Opin Struct Biol 19(6):701-707.
    • (2009) Curr Opin Struct Biol , vol.19 , Issue.6 , pp. 701-707
    • Svetlov, V.1    Nudler, E.2
  • 3
    • 84901677567 scopus 로고    scopus 로고
    • Transcription elongation: Heterogeneous tracking of RNA polymerase and its biological implications
    • Imashimizu M, Shimamoto N, Oshima T, Kashlev M (2014) Transcription elongation: Heterogeneous tracking of RNA polymerase and its biological implications. Tran sc ri pt ion 5(1):e28285-1-e28285-10.
    • (2014) Tran Sc Ri Pt Ion , vol.5 , Issue.1
    • Imashimizu, M.1    Shimamoto, N.2    Oshima, T.3    Kashlev, M.4
  • 4
    • 84888984346 scopus 로고    scopus 로고
    • NusG-Spt5 proteins-Universal tools for transcription modification and communication
    • Tomar SK, Artsimovitch I (2013) NusG-Spt5 proteins-Universal tools for transcription modification and communication. Chem Rev 113(11):8604-8619.
    • (2013) Chem Rev , vol.113 , Issue.11 , pp. 8604-8619
    • Tomar, S.K.1    Artsimovitch, I.2
  • 6
    • 84860504575 scopus 로고    scopus 로고
    • Regulating the regulators: The pervasive effects of Pol II pausing on stimulus-responsive gene networks
    • Gilchrist DA, et al. (2012) Regulating the regulators: The pervasive effects of Pol II pausing on stimulus-responsive gene networks. Genes Dev 26(9):933-944.
    • (2012) Genes Dev , vol.26 , Issue.9 , pp. 933-944
    • Gilchrist, D.A.1
  • 7
    • 84873408886 scopus 로고    scopus 로고
    • Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II
    • Imashimizu M, et al. (2013) Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II. J Mol Biol 425(4):697-712.
    • (2013) J Mol Biol , vol.425 , Issue.4 , pp. 697-712
    • Imashimizu, M.1
  • 8
    • 74549132843 scopus 로고    scopus 로고
    • Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
    • Nechaev S, et al. (2010) Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science 327(5963):335-338.
    • (2010) Science , vol.327 , Issue.5963 , pp. 335-338
    • Nechaev, S.1
  • 9
    • 84872386768 scopus 로고    scopus 로고
    • Structural basis of transcription elongation
    • Martinez-Rucobo FW, Cramer P (2013) Structural basis of transcription elongation. Biochim Biophys Acta 1829(1):9-19.
    • (2013) Biochim Biophys Acta , vol.1829 , Issue.1 , pp. 9-19
    • Martinez-Rucobo, F.W.1    Cramer, P.2
  • 10
    • 80051538984 scopus 로고    scopus 로고
    • RNA transcript 3′-proximal sequence affects translocation bias of RNA polymerase
    • Hein PP, Palangat M, Landick R (2011) RNA transcript 3′-proximal sequence affects translocation bias of RNA polymerase. Biochemistry 50(32):7002-7014.
    • (2011) Biochemistry , vol.50 , Issue.32 , pp. 7002-7014
    • Hein, P.P.1    Palangat, M.2    Landick, R.3
  • 11
    • 3042709472 scopus 로고    scopus 로고
    • Characterization of a novel RNA polymerase II arrest site which lacks a weak 3′ RNA-DNA hybrid
    • DOI 10.1093/nar/gkh505
    • Hawryluk PJ, Ujvári A, Luse DS (2004) Characterization of a novel RNA polymerase II arrest site which lacks a weak 3′ RNA-DNA hybrid. Nucleic Acids Res 32(6):1904-1916. (Pubitemid 38849349)
    • (2004) Nucleic Acids Research , vol.32 , Issue.6 , pp. 1904-1916
    • Hawryluk, P.J.1    Ujvari, A.2    Luse, D.S.3
  • 13
    • 84901684210 scopus 로고    scopus 로고
    • Millisecond dynamics of RNA polymerase II translocation at atomic resolution
    • Silva D-A, et al. (2014) Millisecond dynamics of RNA polymerase II translocation at atomic resolution. Proc Natl Acad Sci USA 111:7665-7670.
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 7665-7670
    • Silva, D.-A.1
  • 14
    • 0033578701 scopus 로고    scopus 로고
    • Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution
    • Zhang G, et al. (1999) Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution. Cell 98(6):811-824.
    • (1999) Cell , vol.98 , Issue.6 , pp. 811-824
    • Zhang, G.1
  • 15
    • 0035827332 scopus 로고    scopus 로고
    • Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution
    • DOI 10.1126/science.1059495
    • Gnatt AL, Cramer P, Fu J, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution. Science 292(5523):1876-1882. (Pubitemid 32538357)
    • (2001) Science , vol.292 , Issue.5523 , pp. 1876-1882
    • Gnatt, A.L.1    Cramer, P.2    Fu, J.3    Bushnell, D.A.4    Kornberg, R.D.5
  • 16
    • 33751235874 scopus 로고    scopus 로고
    • Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis
    • DOI 10.1016/j.cell.2006.11.023, PII S0092867406014796
    • Wang D, Bushnell DA, Westover KD, Kaplan CD, Kornberg RD (2006) Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis. Cell 127(5):941-954. (Pubitemid 44792264)
    • (2006) Cell , vol.127 , Issue.5 , pp. 941-954
    • Wang, D.1    Bushnell, D.A.2    Westover, K.D.3    Kaplan, C.D.4    Kornberg, R.D.5
  • 17
  • 18
    • 84889008965 scopus 로고    scopus 로고
    • Nanobiology of RNA polymerase: Biological consequence of inhomogeneity in reactant
    • Shimamoto N (2013) Nanobiology of RNA polymerase: Biological consequence of inhomogeneity in reactant. Chem Rev 113(11):8400-8422.
    • (2013) Chem Rev , vol.113 , Issue.11 , pp. 8400-8422
    • Shimamoto, N.1
  • 19
    • 0030454007 scopus 로고    scopus 로고
    • Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex
    • LeCuyer KA, Behlen LS, Uhlenbeck OC (1996) Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex. EMBO J 15(24):6847-6853. (Pubitemid 27023255)
    • (1996) EMBO Journal , vol.15 , Issue.24 , pp. 6847-6853
    • LeCuyer, K.A.1    Behlen, L.S.2    Uhlenbeck, O.C.3
  • 20
    • 0030018338 scopus 로고    scopus 로고
    • Contribution of the tyrosines to the structure and function of the human U1A N-terminal RNA binding domain
    • Kranz JK, Lu J, Hall KB (1996) Contribution of the tyrosines to the structure and function of the human U1A N-terminal RNA binding domain. Protein Sci 5(8):1567-1583. (Pubitemid 26257221)
    • (1996) Protein Science , vol.5 , Issue.8 , pp. 1567-1583
    • Kranz, J.K.1    Lu, J.2    Hall, K.B.3
  • 21
    • 84868144458 scopus 로고    scopus 로고
    • Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations
    • Nikolova EN, Bascom GD, Andricioaei I, Al-Hashimi HM (2012) Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations. Biochemistry 51(43):8654-8664.
    • (2012) Biochemistry , vol.51 , Issue.43 , pp. 8654-8664
    • Nikolova, E.N.1    Bascom, G.D.2    Andricioaei, I.3    Al-Hashimi, H.M.4
  • 22
    • 67049100283 scopus 로고    scopus 로고
    • Mechanism of sequence-specific pausing of bacterial RNA polymerase
    • Kireeva ML, Kashlev M (2009) Mechanism of sequence-specific pausing of bacterial RNA polymerase. Proc Natl Acad Sci USA 106(22):8900-8905.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.22 , pp. 8900-8905
    • Kireeva, M.L.1    Kashlev, M.2
  • 23
    • 84863069608 scopus 로고    scopus 로고
    • Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II
    • Da LT, Wang D, Huang X (2012) Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II. J Am Chem Soc 134(4):2399-2406.
    • (2012) J Am Chem Soc , vol.134 , Issue.4 , pp. 2399-2406
    • Da, L.T.1    Wang, D.2    Huang, X.3
  • 24
    • 84867297989 scopus 로고    scopus 로고
    • Active site opening and closure control translocation of multisubunit RNA polymerase
    • Malinen AM, et al. (2012) Active site opening and closure control translocation of multisubunit RNA polymerase. Nucleic Acids Res 40(15):7442-7451.
    • (2012) Nucleic Acids Res , vol.40 , Issue.15 , pp. 7442-7451
    • Malinen, A.M.1
  • 25
    • 77953082083 scopus 로고    scopus 로고
    • E coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase
    • Herbert KM, et al. (2010) E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase. J Mol Biol 399(1):17-30.
    • (2010) J Mol Biol , vol.399 , Issue.1 , pp. 17-30
    • Herbert, K.M.1
  • 26
    • 84884682805 scopus 로고    scopus 로고
    • Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism
    • Dangkulwanich M, et al. (2013) Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism. Elife 2:e00971.
    • (2013) Elife , vol.2
    • Dangkulwanich, M.1
  • 27
    • 78049347876 scopus 로고    scopus 로고
    • RNA polymerase II with open and closed trigger loops: Active site dynamics and nucleic acid translocation
    • Feig M, Burton ZF (2010) RNA polymerase II with open and closed trigger loops: Active site dynamics and nucleic acid translocation. Biophys J 99(8):2577-2586.
    • (2010) Biophys J , vol.99 , Issue.8 , pp. 2577-2586
    • Feig, M.1    Burton, Z.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.