-
1
-
-
33845442201
-
Engineering yeast transcription machinery for improved ethanol tolerance and production
-
Alper H, Moxley J, Nevoigt E, Fink G, Stephanopoulos G (2006) Engineering yeast transcription machinery for improved ethanol tolerance and production. Science 314(5805):1565-1568
-
(2006)
Science
, vol.314
, Issue.5805
, pp. 1565-1568
-
-
Alper, H.1
Moxley, J.2
Nevoigt, E.3
Fink, G.4
Stephanopoulos, G.5
-
2
-
-
33847083318
-
Global transcription machinery engineering: A new approach for improving cellular phenotype
-
Alper H, Stephanopoulos G (2007) Global transcription machinery engineering: a new approach for improving cellular phenotype. Metab Eng 9(3):258-267
-
(2007)
Metab Eng
, vol.9
, Issue.3
, pp. 258-267
-
-
Alper, H.1
Stephanopoulos, G.2
-
3
-
-
23744496272
-
Transcriptional regulation of plant cell wall degradation by filamentous fungi
-
Aro N, Pakula T, Penttila M (2005) Transcriptional regulation of plant cell wall degradation by filamentous fungi. FEMS Microbiol Rev 29(4):719-739
-
(2005)
FEMS Microbiol Rev
, vol.29
, Issue.4
, pp. 719-739
-
-
Aro, N.1
Pakula, T.2
Penttila, M.3
-
4
-
-
84885647005
-
Following gene duplication, paralog interference constrains transcriptional circuit evolution
-
Baker CR, Hanson-Smith V, Johnson AD (2013) Following gene duplication, paralog interference constrains transcriptional circuit evolution. Science 342(6154):104-108
-
(2013)
Science
, vol.342
, Issue.6154
, pp. 104-108
-
-
Baker, C.R.1
Hanson-Smith, V.2
Johnson, A.D.3
-
5
-
-
79960716430
-
Regulation of pentose utilisation by arar, but not xlnr, differs in Aspergillus nidulans and Aspergillus niger
-
Battaglia E, Hansen SF, Leendertse A, Madrid S, Mulder H, Nikolaev I, de Vries RP (2011a) Regulation of pentose utilisation by arar, but not xlnr, differs in Aspergillus nidulans and Aspergillus niger. Appl Microbiol Biotechnol 91(2):387-397
-
(2011)
Appl Microbiol Biotechnol
, vol.91
, Issue.2
, pp. 387-397
-
-
Battaglia, E.1
Hansen, S.F.2
Leendertse, A.3
Madrid, S.4
Mulder, H.5
Nikolaev, I.6
De Vries, R.P.7
-
6
-
-
79960716870
-
Analysis of regulation of pentose utilisation in Aspergillus niger reveals evolutionary adaptations in Eurotiales
-
Battaglia E, Visser L, Nijssen A, van Veluw G, Wosten H, de Vries R (2011b) Analysis of regulation of pentose utilisation in Aspergillus niger reveals evolutionary adaptations in Eurotiales. Stud Mycol(69):31-38
-
(2011)
Stud Mycol
, vol.69
, pp. 31-38
-
-
Battaglia, E.1
Visser, L.2
Nijssen, A.3
Van Veluw, G.4
Wosten, H.5
De Vries, R.6
-
7
-
-
34249809704
-
Optimization of enzyme complexes for lignocellulose hydrolysis
-
Berlin A, Maximenko V, Gilkes N, Saddler J (2007) Optimization of enzyme complexes for lignocellulose hydrolysis. Biotechnol Bioeng 97(2):287-296
-
(2007)
Biotechnol Bioeng
, vol.97
, Issue.2
, pp. 287-296
-
-
Berlin, A.1
Maximenko, V.2
Gilkes, N.3
Saddler, J.4
-
8
-
-
33846606876
-
Nuclear export of the transcription factor NirA is a regulatory checkpoint for nitrate induction in Aspergillus nidulans
-
Bernreiter A, Ramon A, Fernandez-Martinez J, Berger H, Araujo-Bazan L, Espeso EA, Pachlinger R, Gallmetzer A, Anderl I, Scazzocchio C, Strauss J (2007) Nuclear export of the transcription factor NirA is a regulatory checkpoint for nitrate induction in Aspergillus nidulans. Mol Cell Biol 27(3):791-802
-
(2007)
Mol Cell Biol
, vol.27
, Issue.3
, pp. 791-802
-
-
Bernreiter, A.1
Ramon, A.2
Fernandez-Martinez, J.3
Berger, H.4
Araujo-Bazan, L.5
Espeso, E.A.6
Pachlinger, R.7
Gallmetzer, A.8
Anderl, I.9
Scazzocchio, C.10
Strauss, J.11
-
9
-
-
36048974163
-
Xyr1 regulates xylanase but not cellulase formation in the head blight fungus Fusarium graminearum
-
Brunner K, Lichtenauer AM, Kratochwill K, Delic M, Mach RL (2007) Xyr1 regulates xylanase but not cellulase formation in the head blight fungus Fusarium graminearum. Curr Genet 52(5-6):213-220
-
(2007)
Curr Genet
, vol.52
, Issue.5-6
, pp. 213-220
-
-
Brunner, K.1
Lichtenauer, A.M.2
Kratochwill, K.3
Delic, M.4
Mach, R.L.5
-
10
-
-
33745924142
-
A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
-
Colot HV, Park G, Turner GE, Ringelberg C, Crew CM, Litvinkova L, Weiss RL, Borkovich KA, Dunlap JC (2006) A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci U S A 103(27):10352-10357
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.27
, pp. 10352-10357
-
-
Colot, H.V.1
Park, G.2
Turner, G.E.3
Ringelberg, C.4
Crew, C.M.5
Litvinkova, L.6
Weiss, R.L.7
Borkovich, K.A.8
Dunlap, J.C.9
-
11
-
-
84860805742
-
Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi
-
Coradetti S, Craig J, Xiong Y, Shock T, Tian C, Glass N (2012) Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi. Proc Natl Acad Sci U S A 109(19):7397-7402
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.19
, pp. 7397-7402
-
-
Coradetti, S.1
Craig, J.2
Xiong, Y.3
Shock, T.4
Tian, C.5
Glass, N.6
-
12
-
-
84893450996
-
Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa
-
Coradetti ST, Xiong Y, Glass NL (2013) Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa. Microbiologyopen 2(4):595-609
-
(2013)
Microbiologyopen
, vol.2
, Issue.4
, pp. 595-609
-
-
Coradetti, S.T.1
Xiong, Y.2
Glass, N.L.3
-
13
-
-
84882770255
-
Exploitation of latent allostery enables the evolution of new modes of MAP kinase regulation
-
Coyle SM, Flores J, Lim WA (2013) Exploitation of latent allostery enables the evolution of new modes of MAP kinase regulation. Cell 154(4):875-887
-
(2013)
Cell
, vol.154
, Issue.4
, pp. 875-887
-
-
Coyle, S.M.1
Flores, J.2
Lim, W.A.3
-
14
-
-
77950350225
-
A competitive transcription factor binding mechanism determines the timing of late cell cycle-dependent gene expression
-
Darieva Z, Clancy A, Bulmer R, Williams E, Pic-Taylor A, Morgan B, Sharrocks A (2010) A competitive transcription factor binding mechanism determines the timing of late cell cycle-dependent gene expression. Mol Cell 38(1):29-40
-
(2010)
Mol Cell
, vol.38
, Issue.1
, pp. 29-40
-
-
Darieva, Z.1
Clancy, A.2
Bulmer, R.3
Williams, E.4
Pic-Taylor, A.5
Morgan, B.6
Sharrocks, A.7
-
15
-
-
80054118479
-
Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse
-
de Souza WR, de Gouvea PF, Savoldi M, Malavazi I, de Souza Bernardes LA, Goldman MH, de Vries RP, de Castro Oliveira JV, Goldman GH (2011) Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse. Biotech Biofuels 4:40
-
(2011)
Biotech Biofuels
, vol.4
, pp. 40
-
-
De Souza, W.R.1
De Gouvea, P.F.2
Savoldi, M.3
Malavazi, I.4
De Souza Bernardes, L.A.5
Goldman, M.H.6
De Vries, R.P.7
De Castro Oliveira, J.V.8
Goldman, G.H.9
-
16
-
-
84866145069
-
Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing
-
Delmas S, Pullan ST, Gaddipati S, Kokolski M, Malla S, Blythe MJ, Ibbett R, Campbell M, Liddell S, Aboobaker A, Tucker GA, Archer DB (2012) Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing. PLoS Genet 8(8):e1002875
-
(2012)
PLoS Genet
, vol.8
, Issue.8
-
-
Delmas, S.1
Pullan, S.T.2
Gaddipati, S.3
Kokolski, M.4
Malla, S.5
Blythe, M.J.6
Ibbett, R.7
Campbell, M.8
Liddell, S.9
Aboobaker, A.10
Tucker, G.A.11
Archer, D.B.12
-
17
-
-
40449089185
-
Novel promoter sequence required for inductive expression of the Aspergillus nidulans endoglucanase gene eglA
-
Endo Y, Yokoyama M, Morimoto M, Shirai K, Chikamatsu G, Kato N, Tsukagoshi N, Kato M, Kobayashi T (2008) Novel promoter sequence required for inductive expression of the Aspergillus nidulans endoglucanase gene eglA. Biosci Biotechnol Biochem 72(2):312-320
-
(2008)
Biosci Biotechnol Biochem
, vol.72
, Issue.2
, pp. 312-320
-
-
Endo, Y.1
Yokoyama, M.2
Morimoto, M.3
Shirai, K.4
Chikamatsu, G.5
Kato, N.6
Tsukagoshi, N.7
Kato, M.8
Kobayashi, T.9
-
18
-
-
0023465935
-
Transformation of Aspergillus niger using the homologous orotidine-5′-phosphate-decarboxylase gene
-
Goosen T, Bloemheuvel G, Gysler C, Debie D, Vandenbroek H, Swart K (1987) Transformation of Aspergillus niger using the homologous orotidine-5′- phosphate-decarboxylase gene. Curr Genet 11(6-7):499-503
-
(1987)
Curr Genet
, vol.11
, Issue.6-7
, pp. 499-503
-
-
Goosen, T.1
Bloemheuvel, G.2
Gysler, C.3
Debie, D.4
Vandenbroek, H.5
Swart, K.6
-
19
-
-
2942620277
-
Functional analysis of the transcriptional activator XlnR from Aspergillus niger
-
Hasper A, Trindade L, van der Veen D, van Ooyen A, de Graaff L (2004) Functional analysis of the transcriptional activator XlnR from Aspergillus niger. Microbiology 150:1367-1375
-
(2004)
Microbiology
, vol.150
, pp. 1367-1375
-
-
Hasper, A.1
Trindade, L.2
Van Der Veen, D.3
Van Ooyen, A.4
De Graaff, L.5
-
20
-
-
0036901003
-
Multisite phosphorylation provides sophisticated regulation of transcription factors
-
Holmberg CI, Tran SE, Eriksson JE, Sistonen L (2002) Multisite phosphorylation provides sophisticated regulation of transcription factors. Trends Biochem Sci 27(12):619-627
-
(2002)
Trends Biochem Sci
, vol.27
, Issue.12
, pp. 619-627
-
-
Holmberg, C.I.1
Tran, S.E.2
Eriksson, J.E.3
Sistonen, L.4
-
21
-
-
0026029476
-
Induction of cellulose-degrading and xylan-degrading enzyme-systems in Aspergillus terreus by homodisaccharides and heterodisaccharides composed of glucose and xylose
-
Hrmova M, Petrakova E, Biely P (1991) Induction of cellulose-degrading and xylan-degrading enzyme-systems in Aspergillus terreus by homodisaccharides and heterodisaccharides composed of glucose and xylose. J Gen Microbiol 137:541-547
-
(1991)
J Gen Microbiol
, vol.137
, pp. 541-547
-
-
Hrmova, M.1
Petrakova, E.2
Biely, P.3
-
22
-
-
0023274870
-
Genetic evidence that zinc is an essential co-factor in the DNA binding domain of GAL4 protein
-
Johnston M (1987) Genetic evidence that zinc is an essential co-factor in the DNA binding domain of GAL4 protein. Nature 328(6128):353-355
-
(1987)
Nature
, vol.328
, Issue.6128
, pp. 353-355
-
-
Johnston, M.1
-
23
-
-
33646804514
-
D-Galactose induces cellulase gene expression in Hypocrea jecorina at low growth rates
-
Karaffa L, Fekete E, Gamauf C, Szentirmai A, Kubicek CP, Seiboth B (2006) D-Galactose induces cellulase gene expression in Hypocrea jecorina at low growth rates. Microbiology 152(Pt 5):1507-1514
-
(2006)
Microbiology
, vol.152
, Issue.PART 5
, pp. 1507-1514
-
-
Karaffa, L.1
Fekete, E.2
Gamauf, C.3
Szentirmai, A.4
Kubicek, C.P.5
Seiboth, B.6
-
24
-
-
84872122158
-
Analysis of the saccharification capability of high-functional cellulase JN11 for various pretreated biomasses through a comparison with commercially available counterparts
-
Kawai T, Nakazawa H, Ida N, Okada H, Tani S, Sumitani J, Kawaguchi T, Ogasawara W, Morikawa Y, Kobayashi Y (2012) Analysis of the saccharification capability of high-functional cellulase JN11 for various pretreated biomasses through a comparison with commercially available counterparts. J Ind Microbiol Biotechnol 39(12):1741-1749
-
(2012)
J Ind Microbiol Biotechnol
, vol.39
, Issue.12
, pp. 1741-1749
-
-
Kawai, T.1
Nakazawa, H.2
Ida, N.3
Okada, H.4
Tani, S.5
Sumitani, J.6
Kawaguchi, T.7
Ogasawara, W.8
Morikawa, Y.9
Kobayashi, Y.10
-
25
-
-
0022622235
-
Separation of DNA binding from the transcription-activating function of a eukaryotic regulatory protein
-
Keegan L, Gill G, Ptashne M (1986) Separation of DNA binding from the transcription-activating function of a eukaryotic regulatory protein. Science 231(4739):699-704
-
(1986)
Science
, vol.231
, Issue.4739
, pp. 699-704
-
-
Keegan, L.1
Gill, G.2
Ptashne, M.3
-
26
-
-
0027551663
-
The Trichoderma cellulase regulatory puzzle; from the interior life of a secretory fungus
-
Kubicek CP, Messner R, Gruber F, Mach R, Kubicek-Pranz EM (1993) The Trichoderma cellulase regulatory puzzle; from the interior life of a secretory fungus. Enzyme Microb Technol 15(2):90-99
-
(1993)
Enzyme Microb Technol
, vol.15
, Issue.2
, pp. 90-99
-
-
Kubicek, C.P.1
Messner, R.2
Gruber, F.3
Mach, R.4
Kubicek-Pranz, E.M.5
-
27
-
-
0001956748
-
Regulation of production of plant polysaccharide degrading enzymes by Trichoderma
-
Harman GE, Kubicek CP (eds) Taylor and Francis, London
-
Kubicek CP, Penttilä ME (1998) Regulation of production of plant polysaccharide degrading enzymes by Trichoderma. In: Harman GE, Kubicek CP (eds) Trichoderma and Gliocaldium. Enzymes biological control and commercial applications edn, vol 2. Taylor and Francis, London, pp 49-72
-
(1998)
Trichoderma and Gliocaldium. Enzymes Biological Control and Commercial Applications Edn
, vol.2
, pp. 49-72
-
-
Kubicek, C.P.1
Penttilä, M.E.2
-
28
-
-
39749150952
-
NADP regulates the yeast GAL induction system
-
Kumar PR, Yu Y, Sternglanz R, Johnston SA, Joshua-Tor L (2008) NADP regulates the yeast GAL induction system. Science 319(5866):1090-1092
-
(2008)
Science
, vol.319
, Issue.5866
, pp. 1090-1092
-
-
Kumar, P.R.1
Yu, Y.2
Sternglanz, R.3
Johnston, S.A.4
Joshua-Tor, L.5
-
29
-
-
84874110911
-
Agrobacterium tumefaciens-mediated transformation of Aspergillus aculeatus for insertional mutagenesis
-
Kunitake E, Tani S, Sumitani J, Kawaguchi T (2011) Agrobacterium tumefaciens-mediated transformation of Aspergillus aculeatus for insertional mutagenesis. AMB Express 1(1):46
-
(2011)
AMB Express
, vol.1
, Issue.1
, pp. 46
-
-
Kunitake, E.1
Tani, S.2
Sumitani, J.3
Kawaguchi, T.4
-
30
-
-
84874116514
-
A novel transcriptional regulator, ClbR, controls the cellobiose- and cellulose-responsive induction of cellulase and xylanase genes regulated by two distinct signaling pathways in Aspergillus aculeatus
-
Kunitake E, Tani S, Sumitani J, Kawaguchi T (2013) A novel transcriptional regulator, ClbR, controls the cellobiose- and cellulose-responsive induction of cellulase and xylanase genes regulated by two distinct signaling pathways in Aspergillus aculeatus. Appl Microbiol Biotechnol 97(5):2017-2028
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, Issue.5
, pp. 2017-2028
-
-
Kunitake, E.1
Tani, S.2
Sumitani, J.3
Kawaguchi, T.4
-
31
-
-
0026513184
-
Induction of cellulase by gentiobiose and its sulfur-containing analog in Penicillium purpurogenum
-
Kurasawa T, Yachi M, Suto M, Kamagata Y, Takao S, Tomita F (1992) Induction of cellulase by gentiobiose and its sulfur-containing analog in Penicillium purpurogenum. Appl Environ Microbiol 58(1):106-110
-
(1992)
Appl Environ Microbiol
, vol.58
, Issue.1
, pp. 106-110
-
-
Kurasawa, T.1
Yachi, M.2
Suto, M.3
Kamagata, Y.4
Takao, S.5
Tomita, F.6
-
32
-
-
3042595446
-
A novel mode of chaperone action: Heme activation of Hap1 by enhanced association of Hsp90 with the repressed Hsp70-Hap1 complex
-
Lan C, Lee HC, Tang S, Zhang L (2004) A novel mode of chaperone action: heme activation of Hap1 by enhanced association of Hsp90 with the repressed Hsp70-Hap1 complex. J Biol Chem 279(26):27607-27612
-
(2004)
J Biol Chem
, vol.279
, Issue.26
, pp. 27607-27612
-
-
Lan, C.1
Lee, H.C.2
Tang, S.3
Zhang, L.4
-
33
-
-
33751536642
-
Genome-wide natural antisense transcription: Coupling its regulation to its different regulatory mechanisms
-
Lapidot M, Pilpel Y (2006) Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. EMBO Rep 7(12):1216-1222
-
(2006)
EMBO Rep
, vol.7
, Issue.12
, pp. 1216-1222
-
-
Lapidot, M.1
Pilpel, Y.2
-
34
-
-
84856680279
-
The Gal3p transducer of the GAL regulon interacts with the Gal80p repressor in its ligand-induced closed conformation
-
Lavy T, Kumar PR, He H, Joshua-Tor L (2012) The Gal3p transducer of the GAL regulon interacts with the Gal80p repressor in its ligand-induced closed conformation. Genes Dev 26(3):294-303
-
(2012)
Genes Dev 26
, Issue.3
, pp. 294-303
-
-
Lavy, T.1
Kumar, P.R.2
He, H.3
Joshua-Tor, L.4
-
35
-
-
78649343841
-
Multiple metabolic signals influence GAL gene activation by modulating the interaction of Gal80p with the transcriptional activator Gal4p
-
Li Y, Chen G, Liu W (2010) Multiple metabolic signals influence GAL gene activation by modulating the interaction of Gal80p with the transcriptional activator Gal4p. Mol Microbiol 78(2):414-428
-
(2010)
Mol Microbiol
, vol.78
, Issue.2
, pp. 414-428
-
-
Li, Y.1
Chen, G.2
Liu, W.3
-
36
-
-
84873261620
-
Genomic and secretomic analyses reveal unique features of the lignocellulolytic enzyme system of Penicillium decumbens
-
Liu G, Zhang L, Wei X, Zou G, Qin Y, Ma L, Li J, Zheng H, Wang S, Wang C, Xun L, Zhao G, Zhou Z, Qu Y (2013) Genomic and secretomic analyses reveal unique features of the lignocellulolytic enzyme system of Penicillium decumbens. PLoS One 8(2)
-
(2013)
PLoS One
, vol.8
, pp. 2
-
-
Liu, G.1
Zhang, L.2
Wei, X.3
Zou, G.4
Qin, Y.5
Ma, L.6
Li, J.7
Zheng, H.8
Wang, S.9
Wang, C.10
Xun, L.11
Zhao, G.12
Zhou, Z.13
Qu, Y.14
-
37
-
-
0036431922
-
Regulation by carbon and nitrogen sources of a family of cellulases in Aspergillus nidulans
-
Lockington R, Rodbourn L, Barnett S, Carter C, Kelly J (2002) Regulation by carbon and nitrogen sources of a family of cellulases in Aspergillus nidulans. Fungal Genet Biol 37(2):190-196
-
(2002)
Fungal Genet Biol
, vol.37
, Issue.2
, pp. 190-196
-
-
Lockington, R.1
Rodbourn, L.2
Barnett, S.3
Carter, C.4
Kelly, J.5
-
38
-
-
0023649184
-
A new class of yeast transcriptional activators
-
Ma J, Ptashne M (1987) A new class of yeast transcriptional activators. Cell 51(1):113-119
-
(1987)
Cell
, vol.51
, Issue.1
, pp. 113-119
-
-
Ma, J.1
Ptashne, M.2
-
39
-
-
65249168752
-
Inducer-dependent nuclear localization of a Zn(II)2Cys 6 transcriptional activator, AmyR, in Aspergillus nidulans
-
Makita T, Katsuyama Y, Tani S, Suzuki H, Kato N, Todd RB, Hynes MJ, Tsukagoshi N, Kato M, Kobayashi T (2009) Inducer-dependent nuclear localization of a Zn(II)2Cys6 transcriptional activator, AmyR, in Aspergillus nidulans. Biosci Biotechnol Biochem 73(2):391-399
-
(2009)
Biosci Biotechnol Biochem
, vol.73
, Issue.2
, pp. 391-399
-
-
Makita, T.1
Katsuyama, Y.2
Tani, S.3
Suzuki, H.4
Kato, N.5
Todd, R.B.6
Hynes, M.J.7
Tsukagoshi, N.8
Kato, M.9
Kobayashi, T.10
-
40
-
-
0035831033
-
Inducible and reversible enhancement of learning, memory, and long-term potentiation by genetic inhibition of calcineurin
-
Malleret G, Haditsch U, Genoux D, Jones MW, Bliss TV, Vanhoose AM, Weitlauf C, Kandel ER, Winder DG, Mansuy IM (2001) Inducible and reversible enhancement of learning, memory, and long-term potentiation by genetic inhibition of calcineurin. Cell 104(5):675-686
-
(2001)
Cell
, vol.104
, Issue.5
, pp. 675-686
-
-
Malleret, G.1
Haditsch, U.2
Genoux, D.3
Jones, M.W.4
Bliss, T.V.5
Vanhoose, A.M.6
Weitlauf, C.7
Kandel, E.R.8
Winder, D.G.9
Mansuy, I.M.10
-
41
-
-
0000992883
-
Sophorose as an inducer of cellulase in Trichoderma viride
-
Mandels M, Parrish FW, Reese ET (1962) Sophorose as an inducer of cellulase in Trichoderma viride. J Bacteriol 83:400-408
-
(1962)
J Bacteriol
, vol.83
, pp. 400-408
-
-
Mandels, M.1
Parrish, F.W.2
Reese, E.T.3
-
42
-
-
43449098828
-
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
-
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS (2008) Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol 26(5):553-60
-
(2008)
Nat Biotechnol
, vol.26
, Issue.5
, pp. 553-560
-
-
Martinez, D.1
Berka, R.M.2
Henrissat, B.3
Saloheimo, M.4
Arvas, M.5
Baker, S.E.6
Chapman, J.7
Chertkov, O.8
Coutinho, P.M.9
Cullen, D.10
Danchin, E.G.11
Grigoriev, I.V.12
Harris, P.13
Jackson, M.14
Kubicek, C.P.15
Han, C.S.16
Ho, I.17
Larrondo, L.F.18
De Leon, A.L.19
Magnuson, J.K.20
Merino, S.21
Misra, M.22
Nelson, B.23
Putnam, N.24
Robbertse, B.25
Salamov, A.A.26
Schmoll, M.27
Terry, A.28
Thayer, N.29
Westerholm-Parvinen, A.30
Schoch, C.L.31
Yao, J.32
Barabote, R.33
Nelson, M.A.34
Detter, C.35
Bruce, D.36
Kuske, C.R.37
Xie, G.38
Richardson, P.39
Rokhsar, D.S.40
Lucas, S.M.41
Rubin, E.M.42
Dunn-Coleman, N.43
Ward, M.44
Brettin, T.S.45
more..
-
43
-
-
0037174187
-
Transcriptional activator, AoXlnR, mediates cellulose-inductive expression of the xylanolytic and cellulolytic genes in Aspergillus oryzae
-
Marui J, Kitamoto N, Kato M, Kobayashi T, Tsukagoshi N (2002) Transcriptional activator, AoXlnR, mediates cellulose-inductive expression of the xylanolytic and cellulolytic genes in Aspergillus oryzae. FEBS Lett 528(1-3):279-282
-
(2002)
FEBS Lett
, vol.528
, Issue.1-3
, pp. 279-282
-
-
Marui, J.1
Kitamoto, N.2
Kato, M.3
Kobayashi, T.4
Tsukagoshi, N.5
-
44
-
-
0141991995
-
Role of MADS box proteins and their cofactors in combinatorial control of gene expression and cell development
-
Messenguy F, Dubois E (2003) Role of MADS box proteins and their cofactors in combinatorial control of gene expression and cell development. Gene 316:1-321
-
(2003)
Gene
, vol.316
, pp. 1-321
-
-
Messenguy, F.1
Dubois, E.2
-
45
-
-
0028886486
-
Cellulase induction by lactose in Trichoderma reesei PC-3-7
-
Morikawa Y, Ohashi T, Mantani O, Okada H (1995) Cellulase induction by lactose in Trichoderma reesei PC-3-7. Appl Microbiol Biotechnol 44(1-2):106-111
-
(1995)
Appl Microbiol Biotechnol
, vol.44
, Issue.1-2
, pp. 106-111
-
-
Morikawa, Y.1
Ohashi, T.2
Mantani, O.3
Okada, H.4
-
46
-
-
84867294307
-
Comparison and characterization of alpha-amylase inducers in Aspergillus nidulans based on nuclear localization of AmyR
-
Murakoshi Y, Makita T, Kato M, Kobayashi T (2012) Comparison and characterization of alpha-amylase inducers in Aspergillus nidulans based on nuclear localization of AmyR. Appl Microbiol Biotechnol 94(6):1629-1635
-
(2012)
Appl Microbiol Biotechnol
, vol.94
, Issue.6
, pp. 1629-1635
-
-
Murakoshi, Y.1
Makita, T.2
Kato, M.3
Kobayashi, T.4
-
47
-
-
81455154449
-
Construction of a recombinant Trichoderma reesei strain expressing Aspergillus aculeatus beta-glucosidase 1 for efficient biomass conversion
-
Nakazawa H, Kawai T, Ida N, Shida Y, Kobayashi Y, Okada H, Tani S, Sumitani J, Kawaguchi T, Morikawa Y, Ogasawara W (2012) Construction of a recombinant Trichoderma reesei strain expressing Aspergillus aculeatus beta-glucosidase 1 for efficient biomass conversion. Biotechnol Bioeng 109(1):92-99
-
(2012)
Biotechnol Bioeng
, vol.109
, Issue.1
, pp. 92-99
-
-
Nakazawa, H.1
Kawai, T.2
Ida, N.3
Shida, Y.4
Kobayashi, Y.5
Okada, H.6
Tani, S.7
Sumitani, J.8
Kawaguchi, T.9
Morikawa, Y.10
Ogasawara, W.11
-
48
-
-
4344691833
-
Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining
-
Ninomiya Y, Suzuki K, Ishii C, Inoue H (2004) Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining. Proc Natl Acad Sci U S A 101(33):12248-12253
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.33
, pp. 12248-12253
-
-
Ninomiya, Y.1
Suzuki, K.2
Ishii, C.3
Inoue, H.4
-
49
-
-
84860367312
-
A new Zn(II)2Cys6-type transcription factor BglR regulates beta-glucosidase expression in Trichoderma reesei
-
Nitta M, Furukawa T, Shida Y, Mori K, Kuhara S, Morikawa Y, Ogasawara W (2012) A new Zn(II)2Cys6-type transcription factor BglR regulates beta-glucosidase expression in Trichoderma reesei. Fungal Genet Biol 49(5):388-397
-
(2012)
Fungal Genet Biol
, vol.49
, Issue.5
, pp. 388-397
-
-
Nitta, M.1
Furukawa, T.2
Shida, Y.3
Mori, K.4
Kuhara, S.5
Morikawa, Y.6
Ogasawara, W.7
-
50
-
-
73349123829
-
Genes regulated by AoXlnR, the xylanolytic and cellulolytic transcriptional regulator, in Aspergillus oryzae
-
Noguchi Y, Sano M, Kanamaru K, Ko T, Takeuchi M, Kato M, Kobayashi T (2009) Genes regulated by AoXlnR, the xylanolytic and cellulolytic transcriptional regulator, in Aspergillus oryzae. Appl Microbiol Biotechnol 85(1):141-154
-
(2009)
Appl Microbiol Biotechnol
, vol.85
, Issue.1
, pp. 141-154
-
-
Noguchi, Y.1
Sano, M.2
Kanamaru, K.3
Ko, T.4
Takeuchi, M.5
Kato, M.6
Kobayashi, T.7
-
51
-
-
79957857260
-
Xylose triggers reversible phosphorylation of XlnR, the fungal transcriptional activator of xylanolytic and cellulolytic genes in Aspergillus oryzae
-
Noguchi Y, Tanaka H, Kanamaru K, Kato M, Kobayashi T (2011) Xylose triggers reversible phosphorylation of XlnR, the fungal transcriptional activator of xylanolytic and cellulolytic genes in Aspergillus oryzae. Biosci Biotechnol Biochem 75(5):953-959
-
(2011)
Biosci Biotechnol Biochem
, vol.75
, Issue.5
, pp. 953-959
-
-
Noguchi, Y.1
Tanaka, H.2
Kanamaru, K.3
Kato, M.4
Kobayashi, T.5
-
52
-
-
84869880446
-
ManR, a novel Zn(II)2Cys6 transcriptional activator, controls the beta-mannan utilization system in Aspergillus oryzae
-
Ogawa M, Kobayashi T, Koyama Y (2012) ManR, a novel Zn(II) 2Cys6 transcriptional activator, controls the beta-mannan utilization system in Aspergillus oryzae. Fungal Genet Biol 49(12):987-995
-
(2012)
Fungal Genet Biol
, vol.49
, Issue.12
, pp. 987-995
-
-
Ogawa, M.1
Kobayashi, T.2
Koyama, Y.3
-
53
-
-
84875439343
-
ManR, a transcriptional regulator of the beta-mannan utilization system, controls the cellulose utilization system in Aspergillus oryzae
-
Ogawa M, Kobayashi T, Koyama Y (2013) ManR, a transcriptional regulator of the beta-mannan utilization system, controls the cellulose utilization system in Aspergillus oryzae. Biosci Biotechnol Biochem 77(2):426-429
-
(2013)
Biosci Biotechnol Biochem
, vol.77
, Issue.2
, pp. 426-429
-
-
Ogawa, M.1
Kobayashi, T.2
Koyama, Y.3
-
54
-
-
77958003830
-
Development of a chromosomally integrated metabolite-inducible Leu3p-alpha-IPM "off-on" gene switch
-
Poulou M, Bell D, Bozonelos K, Alexiou M, Gavalas A, Lovell-Badge R, Remboutsika E (2010) Development of a chromosomally integrated metabolite-inducible Leu3p-alpha-IPM "off-on" gene switch. PLoS One 5(8):e12488
-
(2010)
PLoS One
, vol.5
, Issue.8
-
-
Poulou, M.1
Bell, D.2
Bozonelos, K.3
Alexiou, M.4
Gavalas, A.5
Lovell-Badge, R.6
Remboutsika, E.7
-
55
-
-
84859091370
-
Unravelling the molecular basis for light modulated cellulase gene expression - The role of photoreceptors in Neurospora crassa
-
Schmoll M, Tian C, Sun J, Tisch D, Glass N (2012) Unravelling the molecular basis for light modulated cellulase gene expression - the role of photoreceptors in Neurospora crassa. BMC Genomics 13:127
-
(2012)
BMC Genomics
, vol.13
, pp. 127
-
-
Schmoll, M.1
Tian, C.2
Sun, J.3
Tisch, D.4
Glass, N.5
-
56
-
-
84861150708
-
Roles of protein kinase a and adenylate cyclase in light-modulated cellulase regulation in Trichoderma reesei
-
Schuster A, Tisch D, Seidl-Seiboth V, Kubicek CP, Schmoll M (2012) Roles of protein kinase a and adenylate cyclase in light-modulated cellulase regulation in Trichoderma reesei. Appl Environ Microbiol 78(7):2168-2178
-
(2012)
Appl Environ Microbiol
, vol.78
, Issue.7
, pp. 2168-2178
-
-
Schuster, A.1
Tisch, D.2
Seidl-Seiboth, V.3
Kubicek, C.P.4
Schmoll, M.5
-
57
-
-
84865188551
-
The putative protein methyltransferase Lae1 controls cellulase gene expression in Trichoderma reesei
-
Seiboth B, Karimi RA, Phatale PA, Linke R, Hartl L, Sauer DG, Smith KM, Baker SE, Freitag M, Kubicek CP (2012) The putative protein methyltransferase Lae1 controls cellulase gene expression in Trichoderma reesei. Mol Microbiol 84(6):1150-1164
-
(2012)
Mol Microbiol
, vol.84
, Issue.6
, pp. 1150-1164
-
-
Seiboth, B.1
Karimi, R.A.2
Phatale, P.A.3
Linke, R.4
Hartl, L.5
Sauer, D.G.6
Smith, K.M.7
Baker, S.E.8
Freitag, M.9
Kubicek, C.P.10
-
58
-
-
0028934434
-
The MADS-box family of transcription factors
-
Shore P, Sharrocks A (1995) The MADS-box family of transcription factors. Eur J Biochem 229(1):1-13
-
(1995)
Eur J Biochem
, vol.229
, Issue.1
, pp. 1-13
-
-
Shore, P.1
Sharrocks, A.2
-
59
-
-
0000225069
-
The Gal3p-Gal80p-Gal4p transcription switch of yeast: Gal3p destabilizes the Gal80p-Gal4p complex in response to galactose and ATP
-
Sil AK, Alam S, Xin P, Ma L, Morgan M, Lebo CM, Woods MP, Hopper JE (1999) The Gal3p-Gal80p-Gal4p transcription switch of yeast: Gal3p destabilizes the Gal80p-Gal4p complex in response to galactose and ATP. Mol Cell Biol 19(11):7828-7840
-
(1999)
Mol Cell Biol
, vol.19
, Issue.11
, pp. 7828-7840
-
-
Sil, A.K.1
Alam, S.2
Xin, P.3
Ma, L.4
Morgan, M.5
Lebo, C.M.6
Woods, M.P.7
Hopper, J.E.8
-
60
-
-
33744801074
-
The billion-ton biofuels vision
-
Somerville C (2006) The billion-ton biofuels vision. Science 312(5778):1277-1277
-
(2006)
Science
, vol.312
, Issue.5778
, pp. 1277-1277
-
-
Somerville, C.1
-
61
-
-
33845671822
-
Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and D-xylose metabolism in Hypocrea jecorina
-
Stricker AR, Grosstessner-Hain K, Wurleitner E, Mach RL (2006) Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and D-xylose metabolism in Hypocrea jecorina. Eukaryot Cell 5(12):2128-2137
-
(2006)
Eukaryot Cell
, vol.5
, Issue.12
, pp. 2128-2137
-
-
Stricker, A.R.1
Grosstessner-Hain, K.2
Wurleitner, E.3
Mach, R.L.4
-
62
-
-
38649100624
-
Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei)
-
Stricker AR, Mach RL, de Graaff LH (2008) Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei). Appl Microbiol Biotechnol 78(2):211-220
-
(2008)
Appl Microbiol Biotechnol
, vol.78
, Issue.2
, pp. 211-220
-
-
Stricker, A.R.1
Mach, R.L.2
De Graaff, L.H.3
-
63
-
-
34547690997
-
Xyr1 receives the lactose induction signal and regulates lactose metabolism in Hypocrea jecorina
-
Stricker AR, Steiger MG, Mach RL (2007) Xyr1 receives the lactose induction signal and regulates lactose metabolism in Hypocrea jecorina. FEBS Lett 581(21):3915-3920
-
(2007)
FEBS Lett
, vol.581
, Issue.21
, pp. 3915-3920
-
-
Stricker, A.R.1
Steiger, M.G.2
Mach, R.L.3
-
64
-
-
80053321725
-
Identification of the CRE-1 cellulolytic regulon in Neurospora crassa
-
Sun J, Glass NL (2011) Identification of the CRE-1 cellulolytic regulon in Neurospora crassa. PLoS One 6(9):e25654
-
(2011)
PLoS One
, vol.6
, Issue.9
-
-
Sun, J.1
Glass, N.L.2
-
65
-
-
0026481107
-
In vitro transcriptional activation by a metabolic intermediate: Activation by Leu3 depends on alpha-isopropylmalate
-
Sze JY, Woontner M, Jaehning JA, Kohlhaw GB (1992) In vitro transcriptional activation by a metabolic intermediate: activation by Leu3 depends on alpha-isopropylmalate. Science 258(5085):1143-1145
-
(1992)
Science
, vol.258
, Issue.5085
, pp. 1143-1145
-
-
Sze, J.Y.1
Woontner, M.2
Jaehning, J.A.3
Kohlhaw, G.B.4
-
66
-
-
84860287424
-
XlnR-independent signaling pathway regulates both cellulase and xylanase genes in response to cellobiose in Aspergillus aculeatus
-
Tani S, Kanamasa S, Sumitani J, Arai M, Kawaguchi T (2012) XlnR-independent signaling pathway regulates both cellulase and xylanase genes in response to cellobiose in Aspergillus aculeatus. Curr Genet 58(2):93-104
-
(2012)
Curr Genet
, vol.58
, Issue.2
, pp. 93-104
-
-
Tani, S.1
Kanamasa, S.2
Sumitani, J.3
Arai, M.4
Kawaguchi, T.5
-
67
-
-
0028913388
-
The Aspergillus PacC zinc-finger transcription factor mediates regulation of both acid-expressed and alkaline-expressed genes by ambient pH
-
Tilburn J, Sarkar S, Widdick D, Espeso E, Orejas M, Mungroo J, Penalva M, Arst H (1995) The Aspergillus PacC zinc-finger transcription factor mediates regulation of both acid-expressed and alkaline-expressed genes by ambient pH. EMBO J 14(4):779-790
-
(1995)
EMBO J
, vol.14
, Issue.4
, pp. 779-790
-
-
Tilburn, J.1
Sarkar, S.2
Widdick, D.3
Espeso, E.4
Orejas, M.5
Mungroo, J.6
Penalva, M.7
Arst, H.8
-
68
-
-
0031164761
-
Evolution of a fungal regulatory gene family: The Zn(II) 2Cys6 binuclear cluster DNA binding motif
-
Todd R, Andrianopoulos A (1997) Evolution of a fungal regulatory gene family: the Zn(II)2Cys6 binuclear cluster DNA binding motif. Fungal Genet Biol 21(3):388-405
-
(1997)
Fungal Genet Biol
, vol.21
, Issue.3
, pp. 388-405
-
-
Todd, R.1
Andrianopoulos, A.2
-
69
-
-
0031660773
-
The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger
-
van Peij N, Gielkens M, de Vries R, Visser J, de Graaff L (1998) The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger. Appl Environ Microbiol 64(10):3615-3619
-
(1998)
Appl Environ Microbiol
, vol.64
, Issue.10
, pp. 3615-3619
-
-
Van Peij, N.1
Gielkens, M.2
De Vries, R.3
Visser, J.4
De Graaff, L.5
-
70
-
-
0033516476
-
Yeast transcriptional regulator Leu3p. Self-masking, specificity ofmasking, and evidence for regulation by the intracellular level of Leu3p
-
Wang D, Zheng F, Holmberg S, Kohlhaw GB (1999) Yeast transcriptional regulator Leu3p. Self-masking, specificity ofmasking, and evidence for regulation by the intracellular level of Leu3p. J Biol Chem 274(27):19017-19024
-
(1999)
J Biol Chem
, vol.274
, Issue.27
, pp. 19017-19024
-
-
Wang, D.1
Zheng, F.2
Holmberg, S.3
Kohlhaw, G.B.4
-
71
-
-
84875262802
-
Regulation of cellulolytic genes by McmA, the SRF-MADS box protein in Aspergillus nidulans
-
Yamakawa Y, Endo Y, Li N, Yoshizawa M, Aoyama M, Watanabe A, Kanamaru K, Kato M, Kobayashi T (2013) Regulation of cellulolytic genes by McmA, the SRF-MADS box protein in Aspergillus nidulans. Biochem Biophys Res Commun 431(4):777-782
-
(2013)
Biochem Biophys Res Commun
, vol.431
, Issue.4
, pp. 777-782
-
-
Yamakawa, Y.1
Endo, Y.2
Li, N.3
Yoshizawa, M.4
Aoyama, M.5
Watanabe, A.6
Kanamaru, K.7
Kato, M.8
Kobayashi, T.9
|