메뉴 건너뛰기




Volumn 91, Issue 2, 2011, Pages 387-397

Regulation of pentose utilisation by AraR, but not XlnR, differs in Aspergillus nidulans and Aspergillus niger

Author keywords

Aspergillus nidulans; Aspergillus niger; Pentose catabolic pathway; Regulation

Indexed keywords

ASPERGILLUS NIDULANS; ASPERGILLUS NIGER; CARBON SOURCE; CATABOLIC PATHWAY; COMPARATIVE ANALYSIS; D-XYLOSE; DEGRADING ENZYMES; EVOLUTIONARY CHANGES; EXPRESSION PROFILE; FILAMENTOUS FUNGI; GENES ENCODING; L-ARABINOSE; MAIN COMPONENT; MONOMERIC SUGARS; NIGER; PLANT POLYSACCHARIDES; REGULATION; REGULATORY SYSTEMS; TRANSCRIPTIONAL ACTIVATORS;

EID: 79960716430     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3242-2     Document Type: Article
Times cited : (60)

References (30)
  • 1
    • 79960716870 scopus 로고    scopus 로고
    • Analysis of regulation of pentose utilization in Aspergillus niger reveals evolutionary adaptations in the Eurotiales
    • in press
    • Battaglia E, Visser L, Nijssen A et al. (2011) Analysis of regulation of pentose utilization in Aspergillus niger reveals evolutionary adaptations in the Eurotiales. Stud Mycol (in press)
    • (2011) Stud Mycol
    • Battaglia, E.1    Visser, L.2    Nijssen, A.3
  • 2
    • 0034668869 scopus 로고    scopus 로고
    • A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans
    • 10.1093/nar/28.22.e97 1:STN:280:DC%2BD3M%2FktFWhsQ%3D%3D
    • MK Chaveroche JM Ghigo C d'Enfert 2000 A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans Nucleic Acids Res 28 22 E97 10.1093/nar/28.22.e97 1:STN:280:DC%2BD3M%2FktFWhsQ%3D%3D
    • (2000) Nucleic Acids Res , vol.28 , Issue.22 , pp. 97
    • Chaveroche, M.K.1    Ghigo, J.M.2    D'Enfert, C.3
  • 4
    • 41449117976 scopus 로고    scopus 로고
    • Sybil: Methods and software for multiple genome comparison and visualization
    • 10.1007/978-1-59745-547-3-6 1:CAS:528:DC%2BD2sXht1WnsrjN
    • J Crabtree SV Angiuoli JR Wortman OR White 2007 Sybil: methods and software for multiple genome comparison and visualization Methods Mol Biol 408 93 108 10.1007/978-1-59745-547-3-6 1:CAS:528:DC%2BD2sXht1WnsrjN
    • (2007) Methods Mol Biol , vol.408 , pp. 93-108
    • Crabtree, J.1    Angiuoli, S.V.2    Wortman, J.R.3    White, O.R.4
  • 7
    • 0035199524 scopus 로고    scopus 로고
    • Aspergillus enzymes involved in degradation of plant cell wall polysaccharides
    • DOI 10.1128/MMBR.65.4.497-522.2001
    • RP de Vries J Visser 2001 Aspergillus enzymes involved in degradation of plant cell wall polysaccharides Microbiol Mol Biol Rev 65 4 497 522 10.1128/MMBR.65.4.497-522.2001 (Pubitemid 33123516)
    • (2001) Microbiology and Molecular Biology Reviews , vol.65 , Issue.4 , pp. 497-522
    • De Vries, R.P.1    Visser, J.2
  • 8
    • 3242778753 scopus 로고    scopus 로고
    • A new black Aspergillus species, A. vadensis, is a promising host for homologous and heterologous protein production
    • DOI 10.1128/AEM.70.7.3954-3959.2004
    • RP de Vries K Burgers PJ van de Vondervoort JC Frisvad RA Samson J Visser 2004 A new black Aspergillus species, A. vadensis, is a promising host for homologous and heterologous protein production Appl Environ Microbiol 70 7 3954 3959 10.1128/AEM.70.7.3954-3959.2004 (Pubitemid 38969734)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.7 , pp. 3954-3959
    • De Vries, R.P.1    Burgers, K.2    Van De Vondervoort, P.J.I.3    Frisvad, J.C.4    Samson, R.A.5    Visser, J.6
  • 9
    • 0028061610 scopus 로고
    • Characterization of an Aspergillus nidulans L-arabitol dehydrogenase mutant
    • RP de Vries MJ Flipphi CF Witteveen J Visser 1994 Characterization of an Aspergillus nidulans L-arabitol dehydrogenase mutant FEMS Microbiol Lett 123 1-2 83 90 10.1111/j.1574-6968.1994.tb07205.x (Pubitemid 24312568)
    • (1994) FEMS Microbiology Letters , vol.123 , Issue.1-2 , pp. 83-90
    • De Vries, R.P.1    Flipphi, M.J.A.2    Witteveen, C.F.B.3    Visser, J.4
  • 11
    • 67650609438 scopus 로고    scopus 로고
    • Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp
    • 10.1016/j.fgb.2008.07.018 1:CAS:528:DC%2BD1MXisFKjtbc%3D
    • M Flipphi J Sun X Robellet L Karaffa E Fekete AP Zeng CP Kubiecek 2009 Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp Fungal Genet Biol 46 Suppl 1 S19 S44 10.1016/j.fgb.2008.07.018 1:CAS:528:DC%2BD1MXisFKjtbc%3D
    • (2009) Fungal Genet Biol , vol.46 , Issue.SUPPL 1
    • Flipphi, M.1    Sun, J.2    Robellet, X.3    Karaffa, L.4    Fekete, E.5    Zeng, A.P.6    Kubiecek, C.P.7
  • 12
    • 0034115471 scopus 로고    scopus 로고
    • The Aspergillus niger transcriptional activator XlnR, which is involved in the degradation of the polysaccharides xylan and cellulose, also regulates D-xylose reductase gene expression
    • DOI 10.1046/j.1365-2958.2000.01843.x
    • AA Hasper J Visser LH de Graaff 2000 The Aspergillus niger transcriptional activator XlnR, which is involved in the degradation of the polysaccharides xylan and cellulose, also regulates D-xylose reductase gene expression Mol Microbiol 36 1 193 200 10.1046/j.1365-2958.2000.01843.x 1:CAS:528:DC%2BD3cXivFymsrw%3D (Pubitemid 30195401)
    • (2000) Molecular Microbiology , vol.36 , Issue.1 , pp. 193-200
    • Hasper, A.A.1    Visser, J.2    De Graaff, L.H.3
  • 13
    • 0023021760 scopus 로고
    • The organization of the araBAD operon of Escherichia coli
    • DOI 10.1016/0378-1119(86)90067-3
    • N Lee W Gielow R Martin E Hamilton A Fowler 1986 The organization of the araBAD operon of Escherichia coli Gene 47 2-3 231 244 10.1016/0378-1119(86) 90067-3 1:CAS:528:DyaL2sXktFymu70%3D (Pubitemid 17069593)
    • (1986) Gene , vol.47 , Issue.2-3 , pp. 231-244
    • Lee, N.1    Gielow, W.2    Martin, R.3
  • 14
    • 0027993285 scopus 로고
    • 6 binuclear cluster
    • R Marmorstein SC Harrison 1994 Crystal structure of a PPR1-DNA complex: DNA recognition by proteins containing a Zn2Cys6 binuclear cluster Genes Dev 8 20 2504 2512 10.1101/gad.8.20.2504 1:CAS:528:DyaK2MXhslejs7s%3D (Pubitemid 24323827)
    • (1994) Genes and Development , vol.8 , Issue.20 , pp. 2504-2512
    • Marmorstein, R.1    Harrison, S.C.2
  • 15
    • 0026547747 scopus 로고
    • DNA recognition by GAL4: Structure of a protein-DNA complex
    • 10.1038/356408a0 1:CAS:528:DyaK38Xlt1Krtr0%3D
    • R Marmorstein M Carey M Ptashne SC Harrison 1992 DNA recognition by GAL4: structure of a protein-DNA complex Nature 356 6368 408 414 10.1038/356408a0 1:CAS:528:DyaK38Xlt1Krtr0%3D
    • (1992) Nature , vol.356 , Issue.6368 , pp. 408-414
    • Marmorstein, R.1    Carey, M.2    Ptashne, M.3    Harrison, S.C.4
  • 16
    • 77954911034 scopus 로고    scopus 로고
    • Identification of an L-arabinose reductase gene in Aspergillus niger and its role in L-arabinose catabolism
    • 10.1074/jbc.M110.113399 1:CAS:528:DC%2BC3cXptFOrurY%3D
    • D Mojzita M Penttilä P Richard 2010 Identification of an L-arabinose reductase gene in Aspergillus niger and its role in L-arabinose catabolism J Biol Chem 285 31 23622 23628 10.1074/jbc.M110.113399 1:CAS:528: DC%2BC3cXptFOrurY%3D
    • (2010) J Biol Chem , vol.285 , Issue.31 , pp. 23622-23628
    • Mojzita, D.1    Penttilä, M.2    Richard, P.3
  • 17
    • 77955662065 scopus 로고    scopus 로고
    • The 'true' L-xylulose reductase of filamentous fungi identified in Aspergillus niger
    • 10.1016/j.febslet.2010.06.037 1:CAS:528:DC%2BC3cXhtVehtrbJ
    • D Mojzita K Vuoristo OM Koivistoinen M Penttilä P Richard 2010 The 'true' L-xylulose reductase of filamentous fungi identified in Aspergillus niger FEBS Lett 584 16 3540 3544 10.1016/j.febslet.2010.06.037 1:CAS:528: DC%2BC3cXhtVehtrbJ
    • (2010) FEBS Lett , vol.584 , Issue.16 , pp. 3540-3544
    • Mojzita, D.1    Vuoristo, K.2    Koivistoinen, O.M.3    Penttilä, M.4    Richard, P.5
  • 19
    • 0028949626 scopus 로고
    • The sequence and binding specificity of UaY, the specific regulator of the purine utilization pathway in Aspergillus nidulans, suggest an evolutionary relationship with the PPR1 protein of Saccharomyces cerevisiae
    • 1:CAS:528:DyaK2MXlsFShs74%3D
    • T Suarez MV de Queiroz N Oestreicher C Scazzocchio 1995 The sequence and binding specificity of UaY, the specific regulator of the purine utilization pathway in Aspergillus nidulans, suggest an evolutionary relationship with the PPR1 protein of Saccharomyces cerevisiae EMBO J 14 7 1453 1467 1:CAS:528:DyaK2MXlsFShs74%3D
    • (1995) EMBO J , vol.14 , Issue.7 , pp. 1453-1467
    • Suarez, T.1    De Queiroz, M.V.2    Oestreicher, N.3    Scazzocchio, C.4
  • 20
    • 0030831985 scopus 로고    scopus 로고
    • 6 binuclear cluster
    • DOI 10.1038/nsb0997-751
    • K Swaminathan P Flynn RJ Reece R Marmorstein 1997 Crystal structure of a PUT3-DNA complex reveals a novel mechanism for DNA recognition by a protein containing a Zn2Cys6 binuclear cluster Nat Struct Biol 4 9 751 759 10.1038/nsb0997-751 1:CAS:528:DyaK2sXmsVSjsrw%3D (Pubitemid 27382436)
    • (1997) Nature Structural Biology , vol.4 , Issue.9 , pp. 751-759
    • Swaminathan, K.1    Flynn, P.2    Reece, R.J.3    Marmorstein, R.4
  • 21
    • 43049168768 scopus 로고    scopus 로고
    • CreA mediates repression of the regulatory gene xlnR which controls the production of xylanolytic enzymes in Aspergillus nidulans
    • 10.1016/j.fgb.2008.03.002 1:CAS:528:DC%2BD1cXmtVSlsrY%3D
    • EN Tamayo A Villanueva AA Hasper LH de Graaff D Ramon M Orejas 2008 CreA mediates repression of the regulatory gene xlnR which controls the production of xylanolytic enzymes in Aspergillus nidulans Fungal Genet Biol 45 6 984 993 10.1016/j.fgb.2008.03.002 1:CAS:528:DC%2BD1cXmtVSlsrY%3D
    • (2008) Fungal Genet Biol , vol.45 , Issue.6 , pp. 984-993
    • Tamayo, E.N.1    Villanueva, A.2    Hasper, A.A.3    De Graaff, L.H.4    Ramon, D.5    Orejas, M.6
  • 22
    • 0021015939 scopus 로고
    • Transformation by integration in Aspergillus nidulans
    • J Tilburn C Scazzocchio GG Taylor JH Zabicky-Zissman RA Lockington RW Davies 1983 Transformation by integration in Aspergillus nidulans Gene 26 2-3 205 221 10.1016/0378-1119(83)90191-9 1:CAS:528:DyaL2cXhsFWrtbg%3D (Pubitemid 14190474)
    • (1983) Gene , vol.26 , Issue.2-3 , pp. 205-221
    • Tilburn, J.1    Scazzocchio, C.2    Taylor, G.G.3
  • 23
    • 34248551089 scopus 로고    scopus 로고
    • Genetic manipulation of Aspergillus nidulans: Meiotic progeny for genetic analysis and strain construction
    • DOI 10.1038/nprot.2007.112, PII NPROT.2007.112
    • RB Todd MA Davis MJ Hynes 2007 Genetic manipulation of Aspergillus nidulans: meiotic progeny for genetic analysis and strain construction Nat Protoc 2 4 811 821 10.1038/nprot.2007.112 1:CAS:528:DC%2BD2sXhtFGnur7O (Pubitemid 46745578)
    • (2007) Nature Protocols , vol.2 , Issue.4 , pp. 811-821
    • Todd, R.B.1    Davis, M.A.2    Hynes, M.J.3
  • 24
    • 0031962771 scopus 로고    scopus 로고
    • Isolation and analysis of xlnR, encoding a transcriptional activator co-ordinating xylanolytic expression in Aspergillus niger
    • DOI 10.1046/j.1365-2958.1998.00666.x
    • NN van Peij J Visser LH de Graaff 1998 Isolation and analysis of xlnR, encoding a transcriptional activator co-ordinating xylanolytic expression in Aspergillus niger Mol Microbiol 27 1 131 142 10.1046/j.1365-2958.1998.00666.x (Pubitemid 28022583)
    • (1998) Molecular Microbiology , vol.27 , Issue.1 , pp. 131-142
    • Van Peij, N.N.M.E.1    Visser, J.2    De Graaff, L.H.3
  • 25
    • 0034796383 scopus 로고    scopus 로고
    • The Aspergillus niger D-xylulose kinase gene is co-expressed with genes encoding arabinan degrading enzymes, and is essential for growth on D-xylose and L-arabinose
    • DOI 10.1046/j.0014-2956.2001.02482.x
    • PA vanKuyk MJ de Groot GJ Ruijter RP de Vries J Visser 2001 The Aspergillus niger D-xylulose kinase gene is co-expressed with genes encoding arabinan degrading enzymes, and is essential for growth on D-xylose and L-arabinose Eur J Biochem 268 20 5414 5423 10.1046/j.0014-2956.2001.02482.x 1:CAS:528:DC%2BD3MXnvFSgsr4%3D (Pubitemid 32948368)
    • (2001) European Journal of Biochemistry , vol.268 , Issue.20 , pp. 5414-5423
    • VanKuyk, P.A.1    De Groot, M.J.L.2    Ruijter, G.J.G.3    De Vries, R.P.4    Visser, J.5
  • 26
    • 0025809486 scopus 로고
    • New pUC-derived cloning vectors with different selectable markers and DNA replication origins
    • 10.1016/0378-1119(91)90365-I 1:CAS:528:DyaK38Xhs1Gg
    • J Vieira J Messing 1991 New pUC-derived cloning vectors with different selectable markers and DNA replication origins Gene 100 189 194 10.1016/0378-1119(91)90365-I 1:CAS:528:DyaK38Xhs1Gg
    • (1991) Gene , vol.100 , pp. 189-194
    • Vieira, J.1    Messing, J.2
  • 28
    • 33646365379 scopus 로고    scopus 로고
    • Cloning, expression, and characterization of bacterial L-arabinose 1-dehydrogenase involved in an alternative pathway of L-arabinose metabolism
    • DOI 10.1074/jbc.M506477200
    • S Watanabe T Kodaki K Makino 2006 Cloning, expression, and characterization of bacterial L-arabinose 1-dehydrogenase involved in an alternative pathway of L-arabinose metabolism J Biol Chem 281 5 2612 2623 10.1074/jbc.M506477200 1:CAS:528:DC%2BD28XovVeisA%3D%3D (Pubitemid 43845722)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.5 , pp. 2612-2623
    • Watanabe, S.1    Kodak, T.2    Makino, K.3
  • 29
    • 33845917013 scopus 로고    scopus 로고
    • Identification and characterization of L-arabonate dehydratase, L-2-Keto-3-deoxyarabonate dehydratase, and L-arabinolactonase involved in an alternative pathway of L-arabinose metabolism: Novel evolutionary insight into sugar metabolism
    • DOI 10.1074/jbc.M606727200
    • S Watanabe N Shimada K Tajima T Kodaki K Makino 2006 Identification and characterization of L-arabonate dehydratase, L-2-keto-3-deoxyarabonate dehydratase, and L-arabinolactonase involved in an alternative pathway of L-arabinose metabolism. Novel evolutionary insight into sugar metabolism J Biol Chem 281 44 33521 33536 10.1074/jbc.M606727200 1:CAS:528:DC%2BD28XhtFegsb3O (Pubitemid 46036734)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.44 , pp. 33521-33536
    • Watanabe, S.1    Shimada, N.2    Tajima, K.3    Kodaki, T.4    Makino, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.