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Volumn 33, Issue 1, 2015, Pages 43-55

Identification, characterization and expression profiling of dicer-like, argonaute and rna-dependent RNA polymerase gene families in foxtail millet

Author keywords

Argonautes (AGO); Dicer like (DCL); Expression profiling; Foxtail millet (Setaria italica); Genome wide analysis; Homology modelling; Phylogenetic analysis; RNA dependent RNA polymerases (RDR)

Indexed keywords

SETARIA ITALICA; ZEA MAYS;

EID: 84901554425     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-014-0736-y     Document Type: Article
Times cited : (52)

References (76)
  • 1
    • 84860552254 scopus 로고    scopus 로고
    • Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum
    • COI: 1:CAS:528:DC%2BC38XlvFKnsL8%3D, PID: 22406496
    • Bai M, Yang GS, Chen WT, Mao ZC, Kang HX, Chen GH, Yang YH, Xie BY (2012) Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum. Gene 501:52–62
    • (2012) Gene , vol.501 , pp. 52-62
    • Bai, M.1    Yang, G.S.2    Chen, W.T.3    Mao, Z.C.4    Kang, H.X.5    Chen, G.H.6    Yang, Y.H.7    Xie, B.Y.8
  • 4
    • 0027521381 scopus 로고
    • The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences
    • COI: 1:CAS:528:DyaK2cXis1ynsQ%3D%3D, PID: 8125050
    • Bjellqvist B, Hughes GJ, Pasquali C, Paquet N, Ravier F, Sanchez JC, Frutiger S, Hochstrasser D (1993) The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis 14:1023–1031
    • (1993) Electrophoresis , vol.14 , pp. 1023-1031
    • Bjellqvist, B.1    Hughes, G.J.2    Pasquali, C.3    Paquet, N.4    Ravier, F.5    Sanchez, J.C.6    Frutiger, S.7    Hochstrasser, D.8
  • 5
    • 0037447146 scopus 로고    scopus 로고
    • ICE1: A regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis
    • COI: 1:CAS:528:DC%2BD3sXjt1Squr4%3D, PID: 12672693
    • Chinnusamy V, Ohta M, Kanrar S, Lee BH, Hong X, Agarwal M, Zhu JK (2003) ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev 17:1043–1054
    • (2003) Genes Dev , vol.17 , pp. 1043-1054
    • Chinnusamy, V.1    Ohta, M.2    Kanrar, S.3    Lee, B.H.4    Hong, X.5    Agarwal, M.6    Zhu, J.K.7
  • 7
    • 79959967431 scopus 로고    scopus 로고
    • psRNAtarget: A plant small RNA target analysis server
    • Dai X, Zhao PX (2013) psRNAtarget: a plant small RNA target analysis server. Nucleic Acids Res 39:W155–W159
    • (2013) Nucleic Acids Res , vol.39 , pp. W155-W159
    • Dai, X.1    Zhao, P.X.2
  • 8
    • 48249126187 scopus 로고    scopus 로고
    • The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1
    • COI: 1:CAS:528:DC%2BD1cXptFGhu7c%3D, PID: 18632569
    • Dong Z, Han MH, Fedoroff N (2008) The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1. Proc Natl Acad Sci U S A 105:9970–9975
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 9970-9975
    • Dong, Z.1    Han, M.H.2    Fedoroff, N.3
  • 9
    • 58449100024 scopus 로고    scopus 로고
    • Foxtail millet, a sequence-driven grass model system
    • COI: 1:CAS:528:DC%2BD1MXjt1Wqsbw%3D, PID: 19126705
    • Doust AN, Kellogg EA, Devos KM, Bennetzen JL (2009) Foxtail millet, a sequence-driven grass model system. Plant Physiol 149:137–141
    • (2009) Plant Physiol , vol.149 , pp. 137-141
    • Doust, A.N.1    Kellogg, E.A.2    Devos, K.M.3    Bennetzen, J.L.4
  • 10
    • 1642506263 scopus 로고    scopus 로고
    • A novel endo-beta-mannanase gene in tomato LeMAN5 is associated with anther and pollen development
    • COI: 1:CAS:528:DC%2BD2cXis1Sjt7Y%3D, PID: 14976239
    • Filichkin SA, Leonard JM, Monteros A, Liu PP, Nonogaki H (2004) A novel endo-beta-mannanase gene in tomato LeMAN5 is associated with anther and pollen development. Plant Physiol 134:1080–1087
    • (2004) Plant Physiol , vol.134 , pp. 1080-1087
    • Filichkin, S.A.1    Leonard, J.M.2    Monteros, A.3    Liu, P.P.4    Nonogaki, H.5
  • 11
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • COI: 1:CAS:528:DC%2BC3MXosVOntbg%3D, PID: 21593126
    • Finn RD, Clements J, Eddy SR (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 39:W29–W37
    • (2011) Nucleic Acids Res , vol.39 , pp. W29-W37
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 14
    • 2442503642 scopus 로고    scopus 로고
    • cis-Regulatory elements for mesophyll-specific gene expression in the C4 plant Flaveria trinervia, the promoter of the C4 phosphoenolpyruvate carboxylase gene
    • COI: 1:CAS:528:DC%2BD2cXktlOqsLo%3D, PID: 15100398
    • Gowik U, Burscheidt J, Akyildiz M, Schlue U, Koczor M, Streubel M, Westhoff P (2004) cis-Regulatory elements for mesophyll-specific gene expression in the C4 plant Flaveria trinervia, the promoter of the C4 phosphoenolpyruvate carboxylase gene. Plant Cell 16:1077–1090
    • (2004) Plant Cell , vol.16 , pp. 1077-1090
    • Gowik, U.1    Burscheidt, J.2    Akyildiz, M.3    Schlue, U.4    Koczor, M.5    Streubel, M.6    Westhoff, P.7
  • 15
    • 17844403787 scopus 로고    scopus 로고
    • Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes
    • COI: 1:CAS:528:DC%2BD2MXjtV2hu7Y%3D, PID: 15821875
    • Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B (2005) Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes. Plant Mol Biol 57:155–171
    • (2005) Plant Mol Biol , vol.57 , pp. 155-171
    • Hartmann, U.1    Sagasser, M.2    Mehrtens, F.3    Stracke, R.4    Weisshaar, B.5
  • 16
    • 0032918558 scopus 로고    scopus 로고
    • Plant cis-acting regulatory DNA elements (PLACE) database:1999
    • COI: 1:CAS:528:DyaK1MXpsVKgug%3D%3D, PID: 9847208
    • Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database:1999. Nucleic Acids Res 27:297–300
    • (1999) Nucleic Acids Res , vol.27 , pp. 297-300
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3    Korenaga, T.4
  • 18
    • 55249089227 scopus 로고    scopus 로고
    • Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice
    • PID: 18826656
    • Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S (2008) Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice. BMC Genomics 9:451
    • (2008) BMC Genomics , vol.9 , pp. 451
    • Kapoor, M.1    Arora, R.2    Lama, T.3    Nijhawan, A.4    Khurana, J.P.5    Tyagi, A.K.6    Kapoor, S.7
  • 19
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: A case study using the Phyre server
    • COI: 1:CAS:528:DC%2BD1MXivF2itbs%3D, PID: 19247286
    • Kelley LA, Sternberg MJE (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4:363–371
    • (2009) Nat Protoc , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.E.2
  • 20
    • 84903907761 scopus 로고    scopus 로고
    • Comprehensive genome-wide identification and expression profiling of foxtail millet [Setaria italica (L.)] miRNAs in response to abiotic stress and development of miRNA database
    • Khan Y, Yadav A, Bonthala BV, Muthamilarasan M, Yadav CB (2014) Comprehensive genome-wide identification and expression profiling of foxtail millet [Setaria italica (L.)] miRNAs in response to abiotic stress and development of miRNA database. Plant Cell Tissue Organ Cult. doi:10.1007/s11240-014-0480-x
    • (2014) Plant Cell Tissue Organ Cult
    • Khan, Y.1    Yadav, A.2    Bonthala, B.V.3    Muthamilarasan, M.4    Yadav, C.B.5
  • 21
    • 84856594225 scopus 로고    scopus 로고
    • Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
    • COI: 1:CAS:528:DC%2BC38XhvVaju7o%3D, PID: 21605713
    • Khraiwesh B, Zhu JK, Zhu J (2012) Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim Biophys Acta 1819:137–148
    • (2012) Biochim Biophys Acta , vol.1819 , pp. 137-148
    • Khraiwesh, B.1    Zhu, J.K.2    Zhu, J.3
  • 22
    • 84891818318 scopus 로고    scopus 로고
    • miRBase: Annotating high confidence microRNAs using deep sequencing data
    • COI: 1:CAS:528:DC%2BC2cXos1Wk, PID: 24275495
    • Kozomara A, Griffiths-Jones S (2014) miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res 42:D68–D73
    • (2014) Nucleic Acids Res , vol.42 , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 23
    • 84882809012 scopus 로고    scopus 로고
    • Reference genes for quantitative real-time PCR analysis in the model plant foxtail millet (Setaria italica L.) subjected to abiotic stress conditions
    • COI: 1:CAS:528:DC%2BC3sXhtlSnur3E
    • Kumar K, Muthamilarasan M, Prasad M (2013) Reference genes for quantitative real-time PCR analysis in the model plant foxtail millet (Setaria italica L.) subjected to abiotic stress conditions. Plant Cell Tissue Organ Cult 115:13–22
    • (2013) Plant Cell Tissue Organ Cult , vol.115 , pp. 13-22
    • Kumar, K.1    Muthamilarasan, M.2    Prasad, M.3
  • 24
    • 84879207740 scopus 로고    scopus 로고
    • Setaria genome sequencing: an overview
    • COI: 1:CAS:528:DC%2BC2cXpt12msg%3D%3D
    • Lata C, Prasad M (2013) Setaria genome sequencing: an overview. J Plant Biochem Biotechnol 22:257–260
    • (2013) J Plant Biochem Biotechnol , vol.22 , pp. 257-260
    • Lata, C.1    Prasad, M.2
  • 25
    • 84879143685 scopus 로고    scopus 로고
    • Foxtail millet, a model crop for genetic and genomic studies in bioenergy grasses
    • PID: 22985089
    • Lata C, Gupta S, Prasad M (2013) Foxtail millet, a model crop for genetic and genomic studies in bioenergy grasses. Crit Rev Biotechnol 33:328–343
    • (2013) Crit Rev Biotechnol , vol.33 , pp. 328-343
    • Lata, C.1    Gupta, S.2    Prasad, M.3
  • 26
    • 18744394070 scopus 로고    scopus 로고
    • Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites
    • Laurie AT, Jackson RM (2005) Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites. Bioinformatics 21:1908–1916
    • (2005) Bioinformatics , vol.21 , pp. 1908-1916
    • Laurie, A.T.1    Jackson, R.M.2
  • 27
    • 79958774172 scopus 로고    scopus 로고
    • Setaria viridis and Setaria italica, model genetic systems for Panicoid grasses
    • COI: 1:CAS:528:DC%2BC3MXnsFWjtbg%3D, PID: 21459768
    • Li P, Brutnell TP (2011) Setaria viridis and Setaria italica, model genetic systems for Panicoid grasses. J Exp Bot 62:3031–3037
    • (2011) J Exp Bot , vol.62 , pp. 3031-3037
    • Li, P.1    Brutnell, T.P.2
  • 28
    • 67649921029 scopus 로고    scopus 로고
    • Dicer-like (DCL) proteins in plants
    • COI: 1:CAS:528:DC%2BD1MXns1Chu7s%3D, PID: 19221817
    • Liu Q, Feng Y, Zhu Z (2009) Dicer-like (DCL) proteins in plants. Funct Integr Genomics 9:277–286
    • (2009) Funct Integr Genomics , vol.9 , pp. 277-286
    • Liu, Q.1    Feng, Y.2    Zhu, Z.3
  • 29
    • 24944443667 scopus 로고    scopus 로고
    • Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses
    • COI: 1:CAS:528:DC%2BD2MXhtVWntLzP, PID: 16105854
    • Luo H, Song F, Zheng Z (2005) Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses. J Exp Bot 56:2673–2682
    • (2005) J Exp Bot , vol.56 , pp. 2673-2682
    • Luo, H.1    Song, F.2    Zheng, Z.3
  • 31
    • 34948901976 scopus 로고    scopus 로고
    • Structural determinants of RNA recognition and cleavage by Dicer
    • COI: 1:CAS:528:DC%2BD2sXhtFWhs77O, PID: 17873886
    • MacRae IJ, Zhou K, Doudna JA (2007) Structural determinants of RNA recognition and cleavage by Dicer. Nat Struct Mol Biol 14:934–940
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 934-940
    • MacRae, I.J.1    Zhou, K.2    Doudna, J.A.3
  • 32
    • 84899784816 scopus 로고    scopus 로고
    • Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.)
    • Mishra AK, Muthamilarasan M, Khan Y, Parida SK, Prasad M (2014) Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.). PLoS ONE. doi:10.1371/journal.pone.0086852
    • (2014) PLoS ONE
    • Mishra, A.K.1    Muthamilarasan, M.2    Khan, Y.3    Parida, S.K.4    Prasad, M.5
  • 35
    • 84874694016 scopus 로고    scopus 로고
    • Cutting-edge research on plant miRNAs
    • Muthamilarasan M, Prasad M (2013) Cutting-edge research on plant miRNAs. Curr Sci 104:287–289
    • (2013) Curr Sci , vol.104 , pp. 287-289
    • Muthamilarasan, M.1    Prasad, M.2
  • 36
    • 84881338587 scopus 로고    scopus 로고
    • Recent advances in crop genomics for ensuring food security
    • Muthamilarasan M, Theriappan P, Prasad M (2013) Recent advances in crop genomics for ensuring food security. Curr Sci 105:155–158
    • (2013) Curr Sci , vol.105 , pp. 155-158
    • Muthamilarasan, M.1    Theriappan, P.2    Prasad, M.3
  • 37
    • 11244271458 scopus 로고    scopus 로고
    • Rapid and transient activation of transcription of the ERF3 gene by wounding in tobacco leaves: Possible involvement of NtWRKYs and autorepression
    • COI: 1:CAS:528:DC%2BD2cXhtFeis7rP, PID: 15509567
    • Nishiuchi T, Shinshi H, Suzuki K (2004) Rapid and transient activation of transcription of the ERF3 gene by wounding in tobacco leaves: possible involvement of NtWRKYs and autorepression. J Biol Chem 279:55355–55361
    • (2004) J Biol Chem , vol.279 , pp. 55355-55361
    • Nishiuchi, T.1    Shinshi, H.2    Suzuki, K.3
  • 38
    • 84877774171 scopus 로고    scopus 로고
    • Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet (Setaria italica L.)
    • COI: 1:CAS:528:DC%2BC3sXosVKhtb8%3D, PID: 23691254
    • Puranik S, Sahu PP, Mandal SN BVS, Parida SK, Prasad M (2013) Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet (Setaria italica L.). PLoS ONE 8:e64594
    • (2013) PLoS ONE , vol.8
    • Puranik, S.1    Sahu, P.P.2    Mandal SN, B.V.S.3    Parida, S.K.4    Prasad, M.5
  • 39
    • 79958753423 scopus 로고    scopus 로고
    • Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize
    • COI: 1:CAS:528:DC%2BC3MXnsVWntr0%3D, PID: 21404010
    • Qian Y, Cheng Y, Cheng X, Jiang H, Zhu S, Cheng B (2011) Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize. Plant Cell Rep 30:1347–1363
    • (2011) Plant Cell Rep , vol.30 , pp. 1347-1363
    • Qian, Y.1    Cheng, Y.2    Cheng, X.3    Jiang, H.4    Zhu, S.5    Cheng, B.6
  • 40
    • 0034092230 scopus 로고    scopus 로고
    • Coordinate copper- and oxygen-responsive Cyc6 and Cpx1 expression in Chlamydomonas is mediated by the same element
    • COI: 1:CAS:528:DC%2BD3cXhslWrs70%3D, PID: 10692397
    • Quinn JM, Barraco P, Eriksson M, Merchant S (2000) Coordinate copper- and oxygen-responsive Cyc6 and Cpx1 expression in Chlamydomonas is mediated by the same element. J Biol Chem 275:6080–6089
    • (2000) J Biol Chem , vol.275 , pp. 6080-6089
    • Quinn, J.M.1    Barraco, P.2    Eriksson, M.3    Merchant, S.4
  • 41
    • 1942501774 scopus 로고    scopus 로고
    • The GATA family of transcription factors in Arabidopsis and rice
    • COI: 1:CAS:528:DC%2BD2cXjsFKmsbY%3D, PID: 15084732
    • Reyes JC, Muro-Pastor MI, Florencio FJ (2004) The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol 134:1718–1732
    • (2004) Plant Physiol , vol.134 , pp. 1718-1732
    • Reyes, J.C.1    Muro-Pastor, M.I.2    Florencio, F.J.3
  • 44
    • 77954185169 scopus 로고    scopus 로고
    • Tomato cultivar tolerant to tomato leaf curl New Delhi virus infection induces virus-specific short interfering RNA accumulation and defence-associated host gene expression
    • COI: 1:CAS:528:DC%2BC3cXptVyqtLs%3D, PID: 20618710
    • Sahu PP, Rai NK, Chakraborty S, Singh M, Chandrappa PH, Ramesh B, Chattopadhyay D, Prasad M (2010) Tomato cultivar tolerant to tomato leaf curl New Delhi virus infection induces virus-specific short interfering RNA accumulation and defence-associated host gene expression. Mol Plant Pathol 11:531–544
    • (2010) Mol Plant Pathol , vol.11 , pp. 531-544
    • Sahu, P.P.1    Rai, N.K.2    Chakraborty, S.3    Singh, M.4    Chandrappa, P.H.5    Ramesh, B.6    Chattopadhyay, D.7    Prasad, M.8
  • 46
    • 84957432569 scopus 로고    scopus 로고
    • Post-transcriptional and epigenetic arms of RNA silencing: A defense machinery of naturally tolerant tomato plant against tomato leaf curl New Delhi virus
    • Sahu PP, Sharma N, Puranik S, Prasad M (2014) Post-transcriptional and epigenetic arms of RNA silencing: a defense machinery of naturally tolerant tomato plant against tomato leaf curl New Delhi virus. Plant Mol Biol Rep. doi:10.1007/s11105-014-0708-2
    • (2014) Plant Mol Biol Rep
    • Sahu, P.P.1    Sharma, N.2    Puranik, S.3    Prasad, M.4
  • 47
    • 0034488771 scopus 로고    scopus 로고
    • Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators
    • COI: 1:CAS:528:DC%2BD3MXhtVCht74%3D, PID: 11135105
    • Sakai H, Aoyama T, Oka A (2000) Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators. Plant J 24:703–711
    • (2000) Plant J , vol.24 , pp. 703-711
    • Sakai, H.1    Aoyama, T.2    Oka, A.3
  • 48
    • 0023664060 scopus 로고
    • A small family of nodule specific genes from soybean
    • COI: 1:CAS:528:DyaL2sXitVyltrc%3D, PID: 3822835
    • Sandal NN, Bojsen K, Marcker KA (1987) A small family of nodule specific genes from soybean. Nucleic Acids Res 15:1507–1519
    • (1987) Nucleic Acids Res , vol.15 , pp. 1507-1519
    • Sandal, N.N.1    Bojsen, K.2    Marcker, K.A.3
  • 49
    • 34250759456 scopus 로고    scopus 로고
    • DICER-LIKE 1 and DICER-LIKE 3 redundantly act to promote flowering via repression of FLOWERING LOCUS C in Arabidopsis thaliana
    • Schmitz RJ, Hong L, Fitzpatrick KE, Amasino RM (2007) DICER-LIKE 1 and DICER-LIKE 3 redundantly act to promote flowering via repression of FLOWERING LOCUS C in Arabidopsis thaliana. Genetics 176:1359–1362
    • (2007) Genetics , vol.176 , pp. 1359-1362
    • Schmitz, R.J.1    Hong, L.2    Fitzpatrick, K.E.3    Amasino, R.M.4
  • 50
    • 84877152813 scopus 로고    scopus 로고
    • Contribution of small RNA pathway components in plant immunity
    • COI: 1:CAS:528:DC%2BC3sXotFansL8%3D, PID: 23489060
    • Seo JK, Wu J, Lii Y, Li Y, Jin H (2013) Contribution of small RNA pathway components in plant immunity. Mol Plant Microbe Interact 26:617–625
    • (2013) Mol Plant Microbe Interact , vol.26 , pp. 617-625
    • Seo, J.K.1    Wu, J.2    Lii, Y.3    Li, Y.4    Jin, H.5
  • 51
    • 84882454955 scopus 로고    scopus 로고
    • Recent advances in plant-virus interaction with emphasis on small interfering RNAs (siRNAs)
    • COI: 1:CAS:528:DC%2BC3sXht1Gnsr%2FF, PID: 23086491
    • Sharma N, Sahu PP, Puranik S, Prasad M (2013) Recent advances in plant-virus interaction with emphasis on small interfering RNAs (siRNAs). Mol Biotechnol 55:63–77
    • (2013) Mol Biotechnol , vol.55 , pp. 63-77
    • Sharma, N.1    Sahu, P.P.2    Puranik, S.3    Prasad, M.4
  • 53
    • 0037266804 scopus 로고    scopus 로고
    • Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence
    • COI: 1:CAS:528:DC%2BD3sXhslWku78%3D, PID: 12535340
    • Simpson SD, Nakashima K, Narusaka Y, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence. Plant J 33:259–270
    • (2003) Plant J , vol.33 , pp. 259-270
    • Simpson, S.D.1    Nakashima, K.2    Narusaka, Y.3    Seki, M.4    Shinozaki, K.5    Yamaguchi-Shinozaki, K.6
  • 54
    • 79952901988 scopus 로고    scopus 로고
    • Production of viable gametes without meiosis in maize deficient for an ARGONAUTE protein
    • COI: 1:CAS:528:DC%2BC3MXkvVOku7s%3D, PID: 21325139
    • Singh M, Goel S, Meeley RB, Dantec C, Parrinello H, Michaud C, Leblanc O, Grimanelli D (2011) Production of viable gametes without meiosis in maize deficient for an ARGONAUTE protein. Plant Cell 23:443–458
    • (2011) Plant Cell , vol.23 , pp. 443-458
    • Singh, M.1    Goel, S.2    Meeley, R.B.3    Dantec, C.4    Parrinello, H.5    Michaud, C.6    Leblanc, O.7    Grimanelli, D.8
  • 55
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • COI: 1:CAS:528:DC%2BD28Xps1yhtL8%3D, PID: 16845082
    • Suyama M, Torrents D, Bork P (2006) PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 34:W609–W612
    • (2006) Nucleic Acids Res , vol.34 , pp. W609-W612
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 56
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular evolutionary genetics analysis version 6.0
    • COI: 1:CAS:528:DC%2BC3sXhvVKhurzP, PID: 24132122
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
    • (2013) Mol Biol Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 57
    • 0027692524 scopus 로고
    • An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence
    • COI: 1:CAS:528:DyaK2cXlvFOisbw%3D, PID: 8312738
    • Urao T, Yamaguchi-Shinozaki K, Urao S, Shinozaki K (1993) An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell 5:1529–1539
    • (1993) Plant Cell , vol.5 , pp. 1529-1539
    • Urao, T.1    Yamaguchi-Shinozaki, K.2    Urao, S.3    Shinozaki, K.4
  • 58
    • 46149088681 scopus 로고    scopus 로고
    • Plant ARGONAUTES
    • COI: 1:CAS:528:DC%2BD1cXotlOjt7g%3D, PID: 18508405
    • Vaucheret H (2008) Plant ARGONAUTES. Trends Plant Sci 13:350–358
    • (2008) Trends Plant Sci , vol.13 , pp. 350-358
    • Vaucheret, H.1
  • 59
    • 2442650370 scopus 로고    scopus 로고
    • The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
    • COI: 1:CAS:528:DC%2BD2cXktlCqs7s%3D, PID: 15131082
    • Vaucheret H, Vazquez F, Crete P, Bartel DP (2004) The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 18:1187–1197
    • (2004) Genes Dev , vol.18 , pp. 1187-1197
    • Vaucheret, H.1    Vazquez, F.2    Crete, P.3    Bartel, D.P.4
  • 60
    • 33645967150 scopus 로고    scopus 로고
    • AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1
    • COI: 1:CAS:528:DC%2BD28XjvFWiu7k%3D, PID: 16600876
    • Vaucheret H, Mallory AC, Bartel DP (2006) AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. Mol Cell 22:129–136
    • (2006) Mol Cell , vol.22 , pp. 129-136
    • Vaucheret, H.1    Mallory, A.C.2    Bartel, D.P.3
  • 61
    • 1642445320 scopus 로고    scopus 로고
    • The promoter of the Vicia faba L. leghemoglobin gene VfLb29 is specifically activated in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots from different legume and nonlegume plants
    • COI: 1:CAS:528:DC%2BD2cXivVSltrs%3D, PID: 14714869
    • Vieweg MF, Frühling M, Quandt HJ, Heim U, Bäumlein H, Pühler A, Küster H, Andreas MP (2004) The promoter of the Vicia faba L. leghemoglobin gene VfLb29 is specifically activated in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots from different legume and nonlegume plants. Mol Plant Microbe Interact 17:62–69
    • (2004) Mol Plant Microbe Interact , vol.17 , pp. 62-69
    • Vieweg, M.F.1    Frühling, M.2    Quandt, H.J.3    Heim, U.4    Bäumlein, H.5    Pühler, A.6    Küster, H.7    Andreas, M.P.8
  • 62
    • 12644262761 scopus 로고    scopus 로고
    • The mechanism of GT element-mediated cell type-specific transcriptional control
    • COI: 1:CAS:528:DyaK2sXms1Cn, PID: 8955086
    • Villain P, Mache R, Zhou DX (1996) The mechanism of GT element-mediated cell type-specific transcriptional control. J Biol Chem 271:32593–32598
    • (1996) J Biol Chem , vol.271 , pp. 32593-32598
    • Villain, P.1    Mache, R.2    Zhou, D.X.3
  • 63
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • COI: 1:CAS:528:DC%2BD1MXkvFGksbs%3D, PID: 19239888
    • Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136:669–687
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 64
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: Software for the graphical presentation of linkage maps and QTLs
    • COI: 1:CAS:528:DC%2BD38XktlOntrw%3D, PID: 12011185
    • Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78
    • (2002) J Hered , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 67
    • 33845780071 scopus 로고    scopus 로고
    • CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis
    • COI: 1:CAS:528:DC%2BD2sXit1Cltw%3D%3D, PID: 17138697
    • Wenkel S, Turck F, Singer K, Gissot L, Le Gourrierec J, Samach A, Coupland G (2006) CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. Plant Cell 18:2971–2984
    • (2006) Plant Cell , vol.18 , pp. 2971-2984
    • Wenkel, S.1    Turck, F.2    Singer, K.3    Gissot, L.4    Le Gourrierec, J.5    Samach, A.6    Coupland, G.7
  • 68
    • 84890972951 scopus 로고    scopus 로고
    • Small RNAs, big impact: Small RNA pathways in transposon control and their effect on the host stress response
    • COI: 1:CAS:528:DC%2BC3sXhsl2murfF
    • Wheeler BS (2013) Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response. Chromosom Res 21:587–600
    • (2013) Chromosom Res , vol.21 , pp. 587-600
    • Wheeler, B.S.1
  • 70
    • 0033036835 scopus 로고    scopus 로고
    • Diversity and similarity among recognition sequences of Dof transcription factors
    • COI: 1:CAS:528:DyaK1MXhsV2gsLc%3D, PID: 10074718
    • Yanagisawa S, Schmidt RJ (1999) Diversity and similarity among recognition sequences of Dof transcription factors. Plant J 17:209–214
    • (1999) Plant J , vol.17 , pp. 209-214
    • Yanagisawa, S.1    Schmidt, R.J.2
  • 71
    • 84883051891 scopus 로고    scopus 로고
    • The integrative expression and co-expression analysis of the AGO gene family in rice
    • COI: 1:CAS:528:DC%2BC3sXht1altb%2FI, PID: 23872535
    • Yang Y, Zhong J, Ouyang YD, Yao J (2013) The integrative expression and co-expression analysis of the AGO gene family in rice. Gene 528:221–235
    • (2013) Gene , vol.528 , pp. 221-235
    • Yang, Y.1    Zhong, J.2    Ouyang, Y.D.3    Yao, J.4
  • 72
    • 13644256193 scopus 로고    scopus 로고
    • Methylation as a crucial step in plant microRNA biogenesis
    • COI: 1:CAS:528:DC%2BD2MXhtFWmsL8%3D, PID: 15705854
    • Yu B, Yang Z, Li J, Minakhina S, Yang M, Padgett RW, Steward R, Chen X (2005) Methylation as a crucial step in plant microRNA biogenesis. Science 307:932–935
    • (2005) Science , vol.307 , pp. 932-935
    • Yu, B.1    Yang, Z.2    Li, J.3    Minakhina, S.4    Yang, M.5    Padgett, R.W.6    Steward, R.7    Chen, X.8
  • 73
    • 84868092917 scopus 로고    scopus 로고
    • Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis
    • COI: 1:CAS:528:DC%2BC38Xhsl2ktbvM, PID: 23071326
    • Zhan X, Wang B, Li H, Liu R, Kalia RK, Zhu JK, Chinnusamy V (2012) Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis. Proc Natl Acad Sci U S A 109:18198–18203
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 18198-18203
    • Zhan, X.1    Wang, B.2    Li, H.3    Liu, R.4    Kalia, R.K.5    Zhu, J.K.6    Chinnusamy, V.7
  • 74
    • 1942501820 scopus 로고    scopus 로고
    • A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells
    • COI: 1:CAS:528:DC%2BD2cXjsFKms7c%3D, PID: 15047897
    • Zhang ZL, Xie Z, Zou X, Casaretto J, Ho TH, Shen QJ (2004) A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol 134:1500–1513
    • (2004) Plant Physiol , vol.134 , pp. 1500-1513
    • Zhang, Z.L.1    Xie, Z.2    Zou, X.3    Casaretto, J.4    Ho, T.H.5    Shen, Q.J.6
  • 76
    • 33947586544 scopus 로고    scopus 로고
    • Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
    • COI: 1:CAS:528:DC%2BD2sXjt1WksbY%3D, PID: 17332757
    • Zheng X, Zhu J, Kapoor A, Zhu JK (2007) Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J 26:1691–1701
    • (2007) EMBO J , vol.26 , pp. 1691-1701
    • Zheng, X.1    Zhu, J.2    Kapoor, A.3    Zhu, J.K.4


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