-
2
-
-
0011542799
-
The Pfam protein families database
-
Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL (2002) The Pfam protein families database. Nucleic Acids Res 30: 276-280
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
3
-
-
0027674194
-
Constitutive, light-responsive and circadian clock-responsive factors compete for the different 1 box elements in plant light-regulated promoters
-
Borello U, Ceccarelli E, Giuliano G (1993) Constitutive, light-responsive and circadian clock-responsive factors compete for the different 1 box elements in plant light-regulated promoters. Plant J 4: 611-619
-
(1993)
Plant J
, vol.4
, pp. 611-619
-
-
Borello, U.1
Ceccarelli, E.2
Giuliano, G.3
-
4
-
-
0025241463
-
Nitrogen regulation in Aspergillus: Are two fingers better than one?
-
Caddick MX, Arst HN, Jr. (1990) Nitrogen regulation in Aspergillus: are two fingers better than one? Gene 95: 123-127
-
(1990)
Gene
, vol.95
, pp. 123-127
-
-
Caddick, M.X.1
Arst Jr., H.N.2
-
5
-
-
0009576918
-
Molecular characterization of two clusters of genes encoding the Type I CAB polypeptides of PSII in Nicotiana plumbaginifolia
-
Castresana C, Staneloni RJ, Malik VS, Cashmore AR (1987) Molecular characterization of two clusters of genes encoding the Type I CAB polypeptides of PSII in Nicotiana plumbaginifolia. Plant Mol Biol 10: 117-126
-
(1987)
Plant Mol Biol
, vol.10
, pp. 117-126
-
-
Castresana, C.1
Staneloni, R.J.2
Malik, V.S.3
Cashmore, A.R.4
-
6
-
-
0027431257
-
A tobacco cDNA clone encoding a GATA-1 zinc finger protein homologous to regulators of nitrogen metabolism in fungi
-
Daniel-Vedele F, Caboche M (1993) A tobacco cDNA clone encoding a GATA-1 zinc finger protein homologous to regulators of nitrogen metabolism in fungi. Mol Gen Genet 240: 365-373
-
(1993)
Mol Gen Genet
, vol.240
, pp. 365-373
-
-
Daniel-Vedele, F.1
Caboche, M.2
-
7
-
-
0032509511
-
Key residues characteristic of GATA N-fingers are recognized by FOG
-
Fox AH, Kowalski K, King GF, Mackay JP, Crossley M (1998) Key residues characteristic of GATA N-fingers are recognized by FOG. J Biol Chem 273: 33595-33603
-
(1998)
J Biol Chem
, vol.273
, pp. 33595-33603
-
-
Fox, A.H.1
Kowalski, K.2
King, G.F.3
Mackay, J.P.4
Crossley, M.5
-
8
-
-
0037008528
-
White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter
-
Froehlich AC, Liu Y, Loros JJ, Dunlap JC (2002) White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 297: 815-819
-
(2002)
Science
, vol.297
, pp. 815-819
-
-
Froehlich, A.C.1
Liu, Y.2
Loros, J.J.3
Dunlap, J.C.4
-
10
-
-
0024094933
-
An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene
-
Giuliano G, Pichersky E, Malik VS, Timko MP, Scolnik PA, Cashmore AR (1988) An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene. Proc Natl Acad Sci USA 85: 7089-7093
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 7089-7093
-
-
Giuliano, G.1
Pichersky, E.2
Malik, V.S.3
Timko, M.P.4
Scolnik, P.A.5
Cashmore, A.R.6
-
11
-
-
0037394262
-
The evolution of Constans-like gene families in barley, rice, and Arabidopsis
-
Griffiths S, Dunford RP, Coupland G, Laurie DA (2003) The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis. Plant Physiol 131: 1855-1867
-
(2003)
Plant Physiol
, vol.131
, pp. 1855-1867
-
-
Griffiths, S.1
Dunford, R.P.2
Coupland, G.3
Laurie, D.A.4
-
12
-
-
0037295687
-
Shedding light on the circadian clock and the photoperiodic control of flowering
-
Hayama R, Coupland G (2003) Shedding light on the circadian clock and the photoperiodic control of flowering. Curr Opin Plant Biol 6: 13-19
-
(2003)
Curr Opin Plant Biol
, vol.6
, pp. 13-19
-
-
Hayama, R.1
Coupland, G.2
-
13
-
-
0038192421
-
The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway
-
Hudson ME, Lisch DR, Quail PH (2003) The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway. Plant J 34: 453-471
-
(2003)
Plant J
, vol.34
, pp. 453-471
-
-
Hudson, M.E.1
Lisch, D.R.2
Quail, P.H.3
-
14
-
-
0037427504
-
Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis
-
Jeong MJ, Shih MC (2003) Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300: 555-562
-
(2003)
Biochem Biophys Res Commun
, vol.300
, pp. 555-562
-
-
Jeong, M.J.1
Shih, M.C.2
-
15
-
-
0024772602
-
ASF-2: A factor that binds to the cauliflower mosaic virus 35S promoter and a conserved GATA motif in Cab promoters
-
Lam E, Chua NH (1989) ASF-2: a factor that binds to the cauliflower mosaic virus 35S promoter and a conserved GATA motif in Cab promoters. Plant Cell 1: 1147-1156
-
(1989)
Plant Cell
, vol.1
, pp. 1147-1156
-
-
Lam, E.1
Chua, N.H.2
-
16
-
-
0036086410
-
Recent improvements to the SMART domain-based sequence annotation resource
-
Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P (2002) Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res 30: 242-244
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 242-244
-
-
Letunic, I.1
Goodstadt, L.2
Dickens, N.J.3
Doerks, T.4
Schultz, J.5
Mott, R.6
Ciccarelli, F.7
Copley, R.R.8
Ponting, C.P.9
Bork, P.10
-
18
-
-
0033944801
-
Molecular evolution of the GATA family of transcription factors: Conservation within the DNA-binding Domain
-
Lowry JA, Atchley WR (2000) Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding Domain. J Mol Evol 50: 103-115
-
(2000)
J Mol Evol
, vol.50
, pp. 103-115
-
-
Lowry, J.A.1
Atchley, W.R.2
-
19
-
-
0035852756
-
Ash1p is a site-specific DNA-binding protein that actively represses transcription
-
Maxon ME, Herskowitz I (2001) Ash1p is a site-specific DNA-binding protein that actively represses transcription. Proc Natl Acad Sci USA 98: 1495-1500
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1495-1500
-
-
Maxon, M.E.1
Herskowitz, I.2
-
20
-
-
0036277413
-
Control of flowering time: Interacting pathways as a basis for diversity
-
Mouradov A, Cremer F, Coupland G (2002) Control of flowering time: interacting pathways as a basis for diversity. Plant Cell Suppl 14: S111-S130
-
(2002)
Plant Cell Suppl
, vol.14
-
-
Mouradov, A.1
Cremer, F.2
Coupland, G.3
-
21
-
-
0034219089
-
Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in Arabidopsis thaliana
-
Nishii A, Takemura M, Fujita H, Shikata M, Yokota A, Kohchi T (2000) Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in Arabidopsis thaliana. Biosci Biotechnol Biochem 64: 1402-1409
-
(2000)
Biosci Biotechnol Biochem
, vol.64
, pp. 1402-1409
-
-
Nishii, A.1
Takemura, M.2
Fujita, H.3
Shikata, M.4
Yokota, A.5
Kohchi, T.6
-
22
-
-
0035929608
-
The N-terminal zinc finger of the erythroid transcription factor GATA-1 binds GATC motifs in DNA
-
Newton A, Mackay J, Crossley M (2001) The N-terminal zinc finger of the erythroid transcription factor GATA-1 binds GATC motifs in DNA. J Biol Chem 276: 35794-35801
-
(2001)
J Biol Chem
, vol.276
, pp. 35794-35801
-
-
Newton, A.1
Mackay, J.2
Crossley, M.3
-
23
-
-
0027284167
-
NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1
-
Omichinski JG, Clore GM, Schaad O, Felsenfeld G, Trainor C, Appella E, Stahl SJ, Gronenborn AM (1993) NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. Science 261: 438-446
-
(1993)
Science
, vol.261
, pp. 438-446
-
-
Omichinski, J.G.1
Clore, G.M.2
Schaad, O.3
Felsenfeld, G.4
Trainor, C.5
Appella, E.6
Stahl, S.J.7
Gronenborn, A.M.8
-
24
-
-
0036668278
-
The GATA family (vertebrates and invertebrates)
-
Patient RK, McGhee JD (2002) The GATA family (vertebrates and invertebrates). Curr Opin Genet Dev 12: 416-422
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 416-422
-
-
Patient, R.K.1
McGhee, J.D.2
-
25
-
-
0031011235
-
The N-terminal fingers of chicken GATA-2 and GATA-3 are independent sequence-specific DNA binding domains
-
Pedone PV, Omichinski JG, Nony P, Trainor C, Gronenborn AM, Clore GM, Felsenfeld G (1997) The N-terminal fingers of chicken GATA-2 and GATA-3 are independent sequence-specific DNA binding domains. EMBO J 16: 2874-2882
-
(1997)
EMBO J
, vol.16
, pp. 2874-2882
-
-
Pedone, P.V.1
Omichinski, J.G.2
Nony, P.3
Trainor, C.4
Gronenborn, A.M.5
Clore, G.M.6
Felsenfeld, G.7
-
26
-
-
0029953677
-
Combinatorial interplay of promoter elements constitutes the minimal determinants for light and developmental control of gene expression in Arabidopsis
-
Puente P, Wei N, Deng XW (1996) Combinatorial interplay of promoter elements constitutes the minimal determinants for light and developmental control of gene expression in Arabidopsis. EMBO J 15: 3732-3743
-
(1996)
EMBO J
, vol.15
, pp. 3732-3743
-
-
Puente, P.1
Wei, N.2
Deng, X.W.3
-
27
-
-
0031170797
-
Footprinting of the spinach nitrite reductase gene promoter reveals the preservation of nitrate regulatory elements between fungi and higher plants
-
Rastogi R, Bate NJ, Sivasankar S, Rothstein SJ (1997) Footprinting of the spinach nitrite reductase gene promoter reveals the preservation of nitrate regulatory elements between fungi and higher plants. Plant Mol Biol 34: 465-476
-
(1997)
Plant Mol Biol
, vol.34
, pp. 465-476
-
-
Rastogi, R.1
Bate, N.J.2
Sivasankar, S.3
Rothstein, S.J.4
-
28
-
-
0030982626
-
Subtle hydrophobic interactions between the seventh residue of the zinc finger loop and the first base of an HGATAR sequence determine promoter-specific recognition by the Aspergillus nidulans GATA factor AreA
-
Ravagnani A, Gorfinkiel L, Langdon T, Diallinas G, Adjadj E, Demais S, Gorton D, Arst HN Jr, Scazzocchio C (1997) Subtle hydrophobic interactions between the seventh residue of the zinc finger loop and the first base of an HGATAR sequence determine promoter-specific recognition by the Aspergillus nidulans GATA factor AreA. EMBO J 16: 3974-3986
-
(1997)
EMBO J
, vol.16
, pp. 3974-3986
-
-
Ravagnani, A.1
Gorfinkiel, L.2
Langdon, T.3
Diallinas, G.4
Adjadj, E.5
Demais, S.6
Gorton, D.7
Arst Jr., H.N.8
Scazzocchio, C.9
-
29
-
-
0035544373
-
Functional importance of conserved domains in the flowering-time gene CONSTANS demonstrated by analysis of mutant alleles and transgenic plants
-
Robson F, Costa MM, Hepworth SR, Vizir I, Pineiro M, Reeves PH, Putterill J, Coupland G (2001) Functional importance of conserved domains in the flowering-time gene CONSTANS demonstrated by analysis of mutant alleles and transgenic plants. Plant J 28: 619-631
-
(2001)
Plant J
, vol.28
, pp. 619-631
-
-
Robson, F.1
Costa, M.M.2
Hepworth, S.R.3
Vizir, I.4
Pineiro, M.5
Reeves, P.H.6
Putterill, J.7
Coupland, G.8
-
30
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
31
-
-
0034125472
-
The fungal GATA factors
-
Scazzocchio C (2000) The fungal GATA factors. Curr Opin Microbiol 3: 126-131
-
(2000)
Curr Opin Microbiol
, vol.3
, pp. 126-131
-
-
Scazzocchio, C.1
-
32
-
-
0025077491
-
Photoregulated gene expression may involve ubiquitous DNA binding proteins
-
Schindler U, Cashmore AR (1990) Photoregulated gene expression may involve ubiquitous DNA binding proteins. EMBO J 9: 3415-3427
-
(1990)
EMBO J
, vol.9
, pp. 3415-3427
-
-
Schindler, U.1
Cashmore, A.R.2
-
33
-
-
0031884087
-
The activities of acidic and glutamine-rich transcriptional activation domains in plant cells: Design of modular transcription factors for high-level expression
-
Schwechheimer C, Smith C, Bevan MW (1998) The activities of acidic and glutamine-rich transcriptional activation domains in plant cells: design of modular transcription factors for high-level expression. Plant Mol Biol 36: 195-204
-
(1998)
Plant Mol Biol
, vol.36
, pp. 195-204
-
-
Schwechheimer, C.1
Smith, C.2
Bevan, M.W.3
-
34
-
-
0034635970
-
Action of the Caenorhabditis elegans GATA factor END-1 in Xenopus suggests that similar mechanisms initiate endoderm development in ecdysozoa and vertebrates
-
Shoichet SA, Malik TH, Rothman JH, Shivdasani RA (2000) Action of the Caenorhabditis elegans GATA factor END-1 in Xenopus suggests that similar mechanisms initiate endoderm development in ecdysozoa and vertebrates. Proc Natl Acad Sci USA 97: 4076-4081
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 4076-4081
-
-
Shoichet, S.A.1
Malik, T.H.2
Rothman, J.H.3
Shivdasani, R.A.4
-
35
-
-
0037109058
-
The hidden duplication past of Arabidopsis thaliana
-
Simillion C, Vandepoele K, Van Montagu MC, Zabeau M, Van de Peer Y (2002) The hidden duplication past of Arabidopsis thaliana. Proc Natl Acad Sci USA 99: 13627-13632
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 13627-13632
-
-
Simillion, C.1
Vandepoele, K.2
Van Montagu, M.C.3
Zabeau, M.4
Van De Peer, Y.5
-
36
-
-
0032478523
-
The solution structure of a fungal AREA protein-DNA complex: An alternative binding mode for the basic carboxyl tail of GATA factors
-
Starich MR, Wikstrom M, Arst HN Jr, Clore GM, Gronenborn AM (1998) The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors. J Mol Biol 277: 605-620
-
(1998)
J Mol Biol
, vol.277
, pp. 605-620
-
-
Starich, M.R.1
Wikstrom, M.2
Arst Jr., H.N.3
Clore, G.M.4
Gronenborn, A.M.5
-
37
-
-
0032478541
-
The solution structure of the Leu22->Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity
-
Starich MR, Wikstrom M, Schumacher S, Arst HN Jr, Gronenborn AM, Clore GM (1998) The solution structure of the Leu22->Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity. J Mol Biol 277: 621-634
-
(1998)
J Mol Biol
, vol.277
, pp. 621-634
-
-
Starich, M.R.1
Wikstrom, M.2
Schumacher, S.3
Arst Jr., H.N.4
Gronenborn, A.M.5
Clore, G.M.6
-
38
-
-
0034604423
-
Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog
-
Strayer C, Oyama T, Schultz TF, Raman R, Somers DE, Mas P, Panda S, Kreps JA, Kay SA (2000) Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289: 768-771
-
(2000)
Science
, vol.289
, pp. 768-771
-
-
Strayer, C.1
Oyama, T.2
Schultz, T.F.3
Raman, R.4
Somers, D.E.5
Mas, P.6
Panda, S.7
Kreps, J.A.8
Kay, S.A.9
-
40
-
-
0032032766
-
Two forms of type IV zinc-finger motif and their kingdom-specific distribution between the flora, fauna and fungi
-
Teakle GR, Gilmartin PM (1998) Two forms of type IV zinc-finger motif and their kingdom-specific distribution between the flora, fauna and fungi. Trends Biochem Sci 23: 100-102
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 100-102
-
-
Teakle, G.R.1
Gilmartin, P.M.2
-
41
-
-
0035984359
-
Arabidopsis thaliana GATA factors: Organisation, expression and DNA-binding characteristics
-
Teakle GR, Manfield IW, Graham JF, Gilmartin PM (2002) Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics. Plant Mol Biol 50: 43-57
-
(2002)
Plant Mol Biol
, vol.50
, pp. 43-57
-
-
Teakle, G.R.1
Manfield, I.W.2
Graham, J.F.3
Gilmartin, P.M.4
-
43
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
44
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
45
-
-
0034623079
-
GATA zinc finger interactions modulate DNA binding and transactivation
-
Trainor CD, Ghirlando R, Simpson MA (2000) GATA zinc finger interactions modulate DNA binding and transactivation. J Biol Chem 275: 28157-28166
-
(2000)
J Biol Chem
, vol.275
, pp. 28157-28166
-
-
Trainor, C.D.1
Ghirlando, R.2
Simpson, M.A.3
-
46
-
-
0031472234
-
FOG, a multitype zinc finger protein, acts as a cofactor for transcription factor GATA-1 in erythroid and megakaryocytic differentiation
-
Tsang AP, Visvader JE, Turner CA, Fujiwara Y, Yu C, Weiss MJ, Crossley M, Orkin SH (1997) FOG, a multitype zinc finger protein, acts as a cofactor for transcription factor GATA-1 in erythroid and megakaryocytic differentiation. Cell 90: 109-119
-
(1997)
Cell
, vol.90
, pp. 109-119
-
-
Tsang, A.P.1
Visvader, J.E.2
Turner, C.A.3
Fujiwara, Y.4
Yu, C.5
Weiss, M.J.6
Crossley, M.7
Orkin, S.H.8
|