-
1
-
-
84931749032
-
Multiple infections and the evolution of virulence
-
Alizon S., de Roode J.C., Michalakis Y. Multiple infections and the evolution of virulence. Ecol. Lett. 2013, 16:556-567.
-
(2013)
Ecol. Lett.
, vol.16
, pp. 556-567
-
-
Alizon, S.1
de Roode, J.C.2
Michalakis, Y.3
-
2
-
-
84875512655
-
Multiple-strain infections of Borrelia afzelii: a role for within-host interactions in the maintenance of antigenic diversity
-
Andersson M., Scherman K.L.R Multiple-strain infections of Borrelia afzelii: a role for within-host interactions in the maintenance of antigenic diversity. Am. Nat. 2013, 181:545-554.
-
(2013)
Am. Nat.
, vol.181
, pp. 545-554
-
-
Andersson, M.1
Scherman, K.L.R.2
-
3
-
-
84901421308
-
-
FigTree v1.4 Computer Program and Documentation Distributed by the Author. Avaailable:
-
Andrew, R., 2009. FigTree v1.4 Computer Program and Documentation Distributed by the Author. Avaailable: http://tree.bio.ed.ac.uk/software/figtree/.
-
(2009)
-
-
Andrew, R.1
-
4
-
-
0006540913
-
Parakeets moulting
-
Ashby E. Parakeets moulting. Emu 1907, 6:193-194.
-
(1907)
Emu
, vol.6
, pp. 193-194
-
-
Ashby, E.1
-
5
-
-
0037223888
-
The evolutionary genomics of pathogen recombination
-
Awadalla P. The evolutionary genomics of pathogen recombination. Nat. Rev. Genet. 2003, 4:50-60.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 50-60
-
-
Awadalla, P.1
-
6
-
-
0032582052
-
Psittacine beak and feather disease virus nucleotide sequence analysis and its relationship to porcine circovirus, plant circoviruses, and chicken anaemia virus
-
Bassami M.R., Berryman D., Wilcox G.E., Raidal S.R. Psittacine beak and feather disease virus nucleotide sequence analysis and its relationship to porcine circovirus, plant circoviruses, and chicken anaemia virus. Virology 1998, 249:453-459.
-
(1998)
Virology
, vol.249
, pp. 453-459
-
-
Bassami, M.R.1
Berryman, D.2
Wilcox, G.E.3
Raidal, S.R.4
-
7
-
-
0035864285
-
Genetic diversity of beak and feather disease virus detected in psittacine species in Australia
-
Bassami M.R., Ypelaar I., Berryman D., Wilcox G.E., Raidal S.R. Genetic diversity of beak and feather disease virus detected in psittacine species in Australia. Virology 2001, 279:392-400.
-
(2001)
Virology
, vol.279
, pp. 392-400
-
-
Bassami, M.R.1
Ypelaar, I.2
Berryman, D.3
Wilcox, G.E.4
Raidal, S.R.5
-
8
-
-
79955476606
-
Metabolic trade-offs and the maintenance of the fittest and the flattest
-
Beardmore R.E., Gudelj I., Lipson D.A., Hurst L.D. Metabolic trade-offs and the maintenance of the fittest and the flattest. Nature 2011, 472:342-346.
-
(2011)
Nature
, vol.472
, pp. 342-346
-
-
Beardmore, R.E.1
Gudelj, I.2
Lipson, D.A.3
Hurst, L.D.4
-
9
-
-
81755185962
-
Ultra-deep sequencing for the analysis of viral populations
-
Beerenwinkel N., Zagordi O. Ultra-deep sequencing for the analysis of viral populations. Curr. Opin. Virol. 2011, 1:413-418.
-
(2011)
Curr. Opin. Virol.
, vol.1
, pp. 413-418
-
-
Beerenwinkel, N.1
Zagordi, O.2
-
10
-
-
34250757252
-
An exact nonparametric method for inferring mosaic structure in sequence triplets
-
Boni M.F., Posada D., Feldman M.W. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 2007, 176:1035-1047.
-
(2007)
Genetics
, vol.176
, pp. 1035-1047
-
-
Boni, M.F.1
Posada, D.2
Feldman, M.W.3
-
11
-
-
54049134100
-
Elimination of false-positive polymerase chain reaction results resulting from hole punch carryover contamination
-
Bonne N., Clark P., Shearer P., Raidal S. Elimination of false-positive polymerase chain reaction results resulting from hole punch carryover contamination. J. Vet. Diagn. Invest. 2008, 20:60-63.
-
(2008)
J. Vet. Diagn. Invest.
, vol.20
, pp. 60-63
-
-
Bonne, N.1
Clark, P.2
Shearer, P.3
Raidal, S.4
-
12
-
-
63449085595
-
Assessment of recombinant beak and feather disease virus (BFDV) capsid protein as a vaccine for psittacine beak and feather disease (PBFD)
-
Bonne N., Shearer P., Sharp M., Clark P., Raidal S. Assessment of recombinant beak and feather disease virus (BFDV) capsid protein as a vaccine for psittacine beak and feather disease (PBFD). J. Gen. Virol. 2009, 90:640-647.
-
(2009)
J. Gen. Virol.
, vol.90
, pp. 640-647
-
-
Bonne, N.1
Shearer, P.2
Sharp, M.3
Clark, P.4
Raidal, S.5
-
13
-
-
0032426791
-
Saving the Kakapo: the conservation of the world[U+05F3]s most peculiar parrot
-
Clout M.N., Merton D.V. Saving the Kakapo: the conservation of the world[U+05F3]s most peculiar parrot. Bird Conserv. Int. 1998, 8:281-296.
-
(1998)
Bird Conserv. Int.
, vol.8
, pp. 281-296
-
-
Clout, M.N.1
Merton, D.V.2
-
14
-
-
84864453108
-
JModelTest 2: more models, new heuristics and parallel computing
-
Darriba D., Taboada G.L., Doallo R., Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat. Meth. 2012, 9:772.
-
(2012)
Nat. Meth.
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
15
-
-
77957233168
-
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
-
Delport W., Poon A.F.Y., Frost S.D.W., Pond S.L.K. Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 2010, 26:2455-2457.
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.Y.2
Frost, S.D.W.3
Pond, S.L.K.4
-
16
-
-
84857357891
-
Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes
-
Delwart E., Li L. Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes. Virus Res. 2012, 164:114-121.
-
(2012)
Virus Res.
, vol.164
, pp. 114-121
-
-
Delwart, E.1
Li, L.2
-
17
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake J.W. A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl. Acad. Sci. USA 1991, 88:7160-7164.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 7160-7164
-
-
Drake, J.W.1
-
18
-
-
0031916242
-
Rates of spontaneous mutation
-
Drake J.W., Charlesworth B., Charlesworth D., Crow J.F. Rates of spontaneous mutation. Genetics 1998, 148:1667-1686.
-
(1998)
Genetics
, vol.148
, pp. 1667-1686
-
-
Drake, J.W.1
Charlesworth, B.2
Charlesworth, D.3
Crow, J.F.4
-
19
-
-
22144499619
-
On the mutation rate of herpes simplex virus type 1
-
Drake J.W., Hwang C.B. On the mutation rate of herpes simplex virus type 1. Genetics 2005, 170:969-970.
-
(2005)
Genetics
, vol.170
, pp. 969-970
-
-
Drake, J.W.1
Hwang, C.B.2
-
20
-
-
77956488734
-
Bayesian random local clocks, or one rate to rule them all
-
Drummond A., Suchard M. Bayesian random local clocks, or one rate to rule them all. BMC Biol. 2010, 8:114.
-
(2010)
BMC Biol.
, vol.8
, pp. 114
-
-
Drummond, A.1
Suchard, M.2
-
21
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
Drummond A.J., Rambaut A., Shapiro B., Pybus O.G. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 2005, 22:1185-1192.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
22
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond A.J., Suchard M.A., Xie D., Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 2012, 29:1969-1973.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
23
-
-
31844437046
-
Observations on detection, excretion and transmission of pigeon circovirus in adult, young and embryonic pigeons
-
Duchatel J.P., Todd D., Smyth J.A., Bustin J.C., Vindevogel H. Observations on detection, excretion and transmission of pigeon circovirus in adult, young and embryonic pigeons. Avian Pathol. 2006, 35:30-34.
-
(2006)
Avian Pathol.
, vol.35
, pp. 30-34
-
-
Duchatel, J.P.1
Todd, D.2
Smyth, J.A.3
Bustin, J.C.4
Vindevogel, H.5
-
24
-
-
37849014296
-
Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus
-
Duffy S., Holmes E.C. Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus. J. Virol. 2008, 82:957-965.
-
(2008)
J. Virol.
, vol.82
, pp. 957-965
-
-
Duffy, S.1
Holmes, E.C.2
-
25
-
-
40849097775
-
Rates of evolutionary change in viruses: patterns and determinants
-
Duffy S., Shackelton L.A., Holmes E.C. Rates of evolutionary change in viruses: patterns and determinants. Nat. Rev. Genet. 2008, 9:267-276.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 267-276
-
-
Duffy, S.1
Shackelton, L.A.2
Holmes, E.C.3
-
26
-
-
77954440480
-
Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses
-
Firth C., Kitchen A., Shapiro B., Suchard M.A., Holmes E.C., Rambaut A. Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses. Mol. Biol. Evol. 2010, 27:2038-2051.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 2038-2051
-
-
Firth, C.1
Kitchen, A.2
Shapiro, B.3
Suchard, M.A.4
Holmes, E.C.5
Rambaut, A.6
-
27
-
-
0033369455
-
Breeding biology of the glossy black-cockatoo (Calyptorhynchus lathami halmaturinus) on Kangaroo Island
-
Garnett S.T., Pedler L.P., Crowley G.M. Breeding biology of the glossy black-cockatoo (Calyptorhynchus lathami halmaturinus) on Kangaroo Island. Emu 1999, 99:262-279.
-
(1999)
Emu
, vol.99
, pp. 262-279
-
-
Garnett, S.T.1
Pedler, L.P.2
Crowley, G.M.3
-
28
-
-
0033753825
-
Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
-
Gibbs M.J., Armstrong J.S., Gibbs A.J. Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 2000, 16:573-582.
-
(2000)
Bioinformatics
, vol.16
, pp. 573-582
-
-
Gibbs, M.J.1
Armstrong, J.S.2
Gibbs, A.J.3
-
29
-
-
33646872444
-
Two families of Rep-like genes that probably originated by interspecies recombination are represented in viral, plasmid, bacterial, and parasitic protozoan genomes
-
Gibbs M.J., Smeianov V.V., Steele J.L., Upcroft P., Efimov B.A. Two families of Rep-like genes that probably originated by interspecies recombination are represented in viral, plasmid, bacterial, and parasitic protozoan genomes. Mol. Biol. Evol. 2006, 23:1097-1100.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1097-1100
-
-
Gibbs, M.J.1
Smeianov, V.V.2
Steele, J.L.3
Upcroft, P.4
Efimov, B.A.5
-
30
-
-
0033529321
-
Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus
-
Gibbs M.J., Weiller G.F. Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus. Proc. Natl. Acad. Sci. USA 1999, 96:8022-8027.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 8022-8027
-
-
Gibbs, M.J.1
Weiller, G.F.2
-
31
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
32
-
-
35448953012
-
The prevalence of beak and feather disease virus infection in wild populations of parrots and cockatoos in New Zealand
-
Ha H.J., Anderson I.L., Alley M.R., Springett B.P., Gartrell B.D. The prevalence of beak and feather disease virus infection in wild populations of parrots and cockatoos in New Zealand. N.Z. Vet. J. 2007, 55:235-238.
-
(2007)
N.Z. Vet. J.
, vol.55
, pp. 235-238
-
-
Ha, H.J.1
Anderson, I.L.2
Alley, M.R.3
Springett, B.P.4
Gartrell, B.D.5
-
33
-
-
84890854427
-
Towards inferring the global movement of beak and feather disease virus
-
Harkins G.W., Martin D.P., Christoffels A., Varsani A. Towards inferring the global movement of beak and feather disease virus. Virology 2014, 450-451:24-33.
-
(2014)
Virology
, pp. 24-33
-
-
Harkins, G.W.1
Martin, D.P.2
Christoffels, A.3
Varsani, A.4
-
34
-
-
4143147435
-
Evidence of unique genotypes of beak and feather disease virus in Southern Africa
-
Heath L., Martin D.P., Warburton L., Perrin M., Horsfield W., Kingsley C., Rybicki E.P., Williamson A.-L. Evidence of unique genotypes of beak and feather disease virus in Southern Africa. J. Virol. 2004, 78:9277-9284.
-
(2004)
J. Virol.
, vol.78
, pp. 9277-9284
-
-
Heath, L.1
Martin, D.P.2
Warburton, L.3
Perrin, M.4
Horsfield, W.5
Kingsley, C.6
Rybicki, E.P.7
Williamson, A.-L.8
-
35
-
-
0038284761
-
Overlap and competition for nest holes among eclectus parrots, palm cockatoos and sulphur-crested cockatoos
-
Heinsohn R., Murphy S., Legge S. Overlap and competition for nest holes among eclectus parrots, palm cockatoos and sulphur-crested cockatoos. Aust. J. Zool. 2003, 51:81-94.
-
(2003)
Aust. J. Zool.
, vol.51
, pp. 81-94
-
-
Heinsohn, R.1
Murphy, S.2
Legge, S.3
-
36
-
-
84901469558
-
-
IUCN, 2013. IUCN Red List of Threatened Species. Version 2013.1. Available: (accessed 14.08.13).
-
IUCN, 2013. IUCN Red List of Threatened Species. Version 2013.1. Available: (accessed 14.08.13). http://www.iucnredlist.org.
-
-
-
-
37
-
-
84876255355
-
Extensive recombination detected amongst Beak and feather disease virus isolates from breeding facilities in Poland
-
Julian L., Piasecki T., Chrzastek K., Walters M., Muhire B., Harkins G.W., Martin D.P., Varsani A. Extensive recombination detected amongst Beak and feather disease virus isolates from breeding facilities in Poland. J. Gen. Virol. 2013, 94:1086-1095.
-
(2013)
J. Gen. Virol.
, vol.94
, pp. 1086-1095
-
-
Julian, L.1
Piasecki, T.2
Chrzastek, K.3
Walters, M.4
Muhire, B.5
Harkins, G.W.6
Martin, D.P.7
Varsani, A.8
-
38
-
-
0037100671
-
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K., Misawa K., Kuma K.i., Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30:3059-3066.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
39
-
-
27644591713
-
A comparison of haemagglutination, haemagglutination inhibition and PCR for the detection of psittacine beak and feather disease virus infection and a comparison of isolates obtained from loriids
-
B.N.
-
Khalesi B., B.N., Stewart M., Sharp M., Raidal S. A comparison of haemagglutination, haemagglutination inhibition and PCR for the detection of psittacine beak and feather disease virus infection and a comparison of isolates obtained from loriids. J. Gen. Virol. 2005, 86:3039-3046.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 3039-3046
-
-
Khalesi, B.1
Stewart, M.2
Sharp, M.3
Raidal, S.4
-
40
-
-
27644591713
-
A comparison of haemagglutination, haemagglutination inhibition and PCR for the detection of psittacine beak and feather disease virus infection and a comparison of isolates obtained from loriids
-
Khalesi B., Bonne N., Stewart M., Sharp M., Raidal S. A comparison of haemagglutination, haemagglutination inhibition and PCR for the detection of psittacine beak and feather disease virus infection and a comparison of isolates obtained from loriids. J. Gen. Virol. 2005, 86:3039-3046.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 3039-3046
-
-
Khalesi, B.1
Bonne, N.2
Stewart, M.3
Sharp, M.4
Raidal, S.5
-
41
-
-
0024347652
-
Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus
-
Khatchikian D., Orlich M., Rott R. Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus. Nature 1989, 340:156-157.
-
(1989)
Nature
, vol.340
, pp. 156-157
-
-
Khatchikian, D.1
Orlich, M.2
Rott, R.3
-
42
-
-
33751425709
-
Genetic diversity of the Rep gene of beak and feather disease virus in South Africa
-
Kondiah K., Albertyn J., Bragg R.R. Genetic diversity of the Rep gene of beak and feather disease virus in South Africa. Arch. Virol. 2006, 151:2539-2545.
-
(2006)
Arch. Virol.
, vol.151
, pp. 2539-2545
-
-
Kondiah, K.1
Albertyn, J.2
Bragg, R.R.3
-
43
-
-
33748770095
-
Automated phylogenetic detection of recombination using a genetic algorithm
-
Kosakovsky Pond S.L., Posada D., Gravenor M.B., Woelk C.H., Frost S.D.W. Automated phylogenetic detection of recombination using a genetic algorithm. Mol. Biol. Evol. 2006, 23:1891-1901.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1891-1901
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.W.5
-
44
-
-
84861325281
-
Tracking viral evolution during a disease outbreak: the rapid and complete selective sweep of a circovirus in the endangered echo parakeet
-
Kundu S., Faulkes C.G., Greenwood A.G., Jones C.G., Kaiser P., Lyne O.D., Black S.A., Chowrimootoo A., Groombridge J.J. Tracking viral evolution during a disease outbreak: the rapid and complete selective sweep of a circovirus in the endangered echo parakeet. J. Virol. 2012, 86:5221-5229.
-
(2012)
J. Virol.
, vol.86
, pp. 5221-5229
-
-
Kundu, S.1
Faulkes, C.G.2
Greenwood, A.G.3
Jones, C.G.4
Kaiser, P.5
Lyne, O.D.6
Black, S.A.7
Chowrimootoo, A.8
Groombridge, J.J.9
-
45
-
-
62749122244
-
Widely conserved recombination patterns among single-stranded DNA viruses
-
Lefeuvre P., Lett J.-M., Varsani A., Martin D.P. Widely conserved recombination patterns among single-stranded DNA viruses. J. Virol. 2009, 83:2697-2707.
-
(2009)
J. Virol.
, vol.83
, pp. 2697-2707
-
-
Lefeuvre, P.1
Lett, J.-M.2
Varsani, A.3
Martin, D.P.4
-
46
-
-
2942702071
-
Availability of nest hollows and breeding population size of eclectus parrots, Eclectus roratus, on Cape York Peninsula, Australia
-
Legge S., Heinsohn R., Garnett S. Availability of nest hollows and breeding population size of eclectus parrots, Eclectus roratus, on Cape York Peninsula, Australia. Wildl. Res. 2004, 31:149-161.
-
(2004)
Wildl. Res.
, vol.31
, pp. 149-161
-
-
Legge, S.1
Heinsohn, R.2
Garnett, S.3
-
47
-
-
75449118921
-
Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces
-
Li L., Kapoor A., Slikas B., Bamidele O.S., Wang C., Shaukat S., Masroor M.A., Wilson M.L., Ndjango J.-B.N., Peeters M., Gross-Camp N.D., Muller M.N., Hahn B.H., Wolfe N.D., Triki H., Bartkus J., Zaidi S.Z., Delwart E. Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces. J. Virol. 2010, 84:1674-1682.
-
(2010)
J. Virol.
, vol.84
, pp. 1674-1682
-
-
Li, L.1
Kapoor, A.2
Slikas, B.3
Bamidele, O.S.4
Wang, C.5
Shaukat, S.6
Masroor, M.A.7
Wilson, M.L.8
Ndjango, J.-B.N.9
Peeters, M.10
Gross-Camp, N.D.11
Muller, M.N.12
Hahn, B.H.13
Wolfe, N.D.14
Triki, H.15
Bartkus, J.16
Zaidi, S.Z.17
Delwart, E.18
-
48
-
-
34249787638
-
Genetic structure and population variability of tomato yellow leaf curl China virus
-
Linmei G., Jiangtao Z., Xueping Z., Hongye L. Genetic structure and population variability of tomato yellow leaf curl China virus. J. Virol. 2007, 81:5902-5907.
-
(2007)
J. Virol.
, vol.81
, pp. 5902-5907
-
-
Linmei, G.1
Jiangtao, Z.2
Xueping, Z.3
Hongye, L.4
-
49
-
-
80053436958
-
Host phylogeny determines viral persistence and replication in novel hosts
-
Longdon B., Hadfield J.D., Webster C.L., Obbard D.J., Jiggins F.M. Host phylogeny determines viral persistence and replication in novel hosts. PLoS Pathog. 2011, 7:e1002260.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Longdon, B.1
Hadfield, J.D.2
Webster, C.L.3
Obbard, D.J.4
Jiggins, F.M.5
-
50
-
-
0033824415
-
RDP: detection of recombination amongst aligned sequences
-
Martin D., Rybicki E. RDP: detection of recombination amongst aligned sequences. Bioinformatics 2000, 16:562-563.
-
(2000)
Bioinformatics
, vol.16
, pp. 562-563
-
-
Martin, D.1
Rybicki, E.2
-
51
-
-
77957243284
-
RDP3: a flexible and fast computer program for analyzing recombination
-
Martin D.P., Lemey P., Lott M., Moulton V., Posada D., Lefeuvre P. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 2010, 26:2462-2463.
-
(2010)
Bioinformatics
, vol.26
, pp. 2462-2463
-
-
Martin, D.P.1
Lemey, P.2
Lott, M.3
Moulton, V.4
Posada, D.5
Lefeuvre, P.6
-
52
-
-
13144283628
-
A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
-
Martin D.P., Posada D., Crandall K.A., Williamson C. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res. Hum. Retroviruses 2005, 21:98-102.
-
(2005)
AIDS Res. Hum. Retroviruses
, vol.21
, pp. 98-102
-
-
Martin, D.P.1
Posada, D.2
Crandall, K.A.3
Williamson, C.4
-
53
-
-
84865767576
-
Molecular characterisation of beak and feather disease virus (BFDV) in New Zealand and its implications for managing an infectious disease
-
Massaro M., Ortiz-Catedral L., Julian L., Galbraith J., Kurenbach B., Kearvell J., Kemp J., Hal J., Elkington S., Taylor G., Greene T., Wetering J., Wetering M., Pryde M., Dilks P., Heber S., Steeves T., Walters M., Shaw S., Potter J., Farrant M., Brunton D., Hauber M., Jackson B., Bell P., Moorhouse R., McInnes K., Varsani A. Molecular characterisation of beak and feather disease virus (BFDV) in New Zealand and its implications for managing an infectious disease. Arch. Virol. 2012, 157:1651-1663.
-
(2012)
Arch. Virol.
, vol.157
, pp. 1651-1663
-
-
Massaro, M.1
Ortiz-Catedral, L.2
Julian, L.3
Galbraith, J.4
Kurenbach, B.5
Kearvell, J.6
Kemp, J.7
Hal, J.8
Elkington, S.9
Taylor, G.10
Greene, T.11
Wetering, J.12
Wetering, M.13
Pryde, M.14
Dilks, P.15
Heber, S.16
Steeves, T.17
Walters, M.18
Shaw, S.19
Potter, J.20
Farrant, M.21
Brunton, D.22
Hauber, M.23
Jackson, B.24
Bell, P.25
Moorhouse, R.26
McInnes, K.27
Varsani, A.28
more..
-
54
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews D.H., Sabina J., Zuker M., Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 1999, 288:911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
55
-
-
62749189896
-
Discovery of a novel single-stranded DNA Virus from a sea turtle fibropapilloma by using viral metagenomics
-
Ng T.F.F., Manire C., Borrowman K., Langer T., Ehrhart L., Breitbart M. Discovery of a novel single-stranded DNA Virus from a sea turtle fibropapilloma by using viral metagenomics. J. Virol. 2009, 83:2500-2509.
-
(2009)
J. Virol.
, vol.83
, pp. 2500-2509
-
-
Ng, T.F.F.1
Manire, C.2
Borrowman, K.3
Langer, T.4
Ehrhart, L.5
Breitbart, M.6
-
56
-
-
0031660490
-
Beak and feather disease virus and porcine circovirus genomes: intermediates between the geminiviruses and plant circoviruses
-
K.S.
-
Niagro F.D., Forsthoefe l.A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.L., K.S., Lukert P.D Beak and feather disease virus and porcine circovirus genomes: intermediates between the geminiviruses and plant circoviruses. Arch. Virol. 1998, 143:1723-1744.
-
(1998)
Arch. Virol.
, vol.143
, pp. 1723-1744
-
-
Niagro, F.D.1
Forsthoefe, L.2
Lawther, R.P.3
Kamalanathan, L.4
Ritchie, B.W.L.5
Lukert, P.D.6
-
57
-
-
0033590220
-
Possible emergence of new geminiviruses by frequent recombination
-
Padidam M., Sawyer S., Fauquet C.M. Possible emergence of new geminiviruses by frequent recombination. Virology 1999, 265:218-225.
-
(1999)
Virology
, vol.265
, pp. 218-225
-
-
Padidam, M.1
Sawyer, S.2
Fauquet, C.M.3
-
58
-
-
42649136257
-
Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
-
Parker J., Rambaut A., Pybus O.G. Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. Infect. Genet. Evol. 2008, 8:239-246.
-
(2008)
Infect. Genet. Evol.
, vol.8
, pp. 239-246
-
-
Parker, J.1
Rambaut, A.2
Pybus, O.G.3
-
59
-
-
84905733047
-
Evidence of psittacine beak and feather disease virus spillover into wild critically endangered orange-bellied parrots (Neophema chrysogaster)
-
Peters A., Patterson E.I., Baker B.G., Holdsworth M., Sarker S., Ghorashi S.A., Raidal S.R. Evidence of psittacine beak and feather disease virus spillover into wild critically endangered orange-bellied parrots (Neophema chrysogaster). J. Wildl. Dis. 2014, 50.
-
(2014)
J. Wildl. Dis.
, pp. 50
-
-
Peters, A.1
Patterson, E.I.2
Baker, B.G.3
Holdsworth, M.4
Sarker, S.5
Ghorashi, S.A.6
Raidal, S.R.7
-
60
-
-
0035923699
-
Evaluation of methods for detecting recombination from DNA sequences: computer simulations
-
Posada D., Crandall K.A. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. 2001, 98:13757-13762.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 13757-13762
-
-
Posada, D.1
Crandall, K.A.2
-
61
-
-
84901462074
-
Nude cockatoos
-
Powell A.M. Nude cockatoos. Emu 1903, III:55-56.
-
(1903)
Emu
, vol.3
, pp. 55-56
-
-
Powell, A.M.1
-
62
-
-
38749105103
-
Detection of beak and feather disease virus DNA in embryonated eggs of psittacine birds
-
Rahaus M., Desloges N., Probst S., Loebbert B., Lantermann W., Wolff M.H. Detection of beak and feather disease virus DNA in embryonated eggs of psittacine birds. Vet. Med. (Praha) 2008, 53:53-58.
-
(2008)
Vet. Med. (Praha)
, vol.53
, pp. 53-58
-
-
Rahaus, M.1
Desloges, N.2
Probst, S.3
Loebbert, B.4
Lantermann, W.5
Wolff, M.H.6
-
63
-
-
0028191197
-
The hemagglutination spectrum of psittacine beak and feather disease virus
-
Raidal S.R., Cross G.M. The hemagglutination spectrum of psittacine beak and feather disease virus. Avian Pathol. 1994, 23:621-630.
-
(1994)
Avian Pathol.
, vol.23
, pp. 621-630
-
-
Raidal, S.R.1
Cross, G.M.2
-
64
-
-
0027583537
-
Seroprevalence of psittacine beak and feather disease in wild psittacine birds in New South Wales
-
Raidal S.R., McElnea C.L., Cross G.M. Seroprevalence of psittacine beak and feather disease in wild psittacine birds in New South Wales. Aust. Vet. J. 1993, 70:137-139.
-
(1993)
Aust. Vet. J.
, vol.70
, pp. 137-139
-
-
Raidal, S.R.1
McElnea, C.L.2
Cross, G.M.3
-
65
-
-
0027584075
-
Laboratory diagnosis of psittacine beak and feather disease by hemagglutination and hemagglutination inhibition
-
Raidal S.R., Sabine M., Cross G.M. Laboratory diagnosis of psittacine beak and feather disease by hemagglutination and hemagglutination inhibition. Aust. Vet. J. 1993, 70:133-137.
-
(1993)
Aust. Vet. J.
, vol.70
, pp. 133-137
-
-
Raidal, S.R.1
Sabine, M.2
Cross, G.M.3
-
66
-
-
45849092503
-
High rates of molecular evolution in hantaviruses
-
Ramsden C., Melo F.L., Figueiredo L.M., Holmes E.C., Zanotto P.M.A., Consortium t.V. High rates of molecular evolution in hantaviruses. Mol. Biol. Evol. 2008, 25:1488-1492.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1488-1492
-
-
Ramsden, C.1
Melo, F.L.2
Figueiredo, L.M.3
Holmes, E.C.4
Zanotto, P.M.A.5
Consortium, T.6
-
67
-
-
0025409099
-
Ultrastructural, protein composition, and antigenic comparison of psittacine beak and feather disease virus purified from four genera of psittacine birds
-
Ritchie B., Niagro F., Latimer K., Lukert P., WL S., Rakich P., Pritchard N. Ultrastructural, protein composition, and antigenic comparison of psittacine beak and feather disease virus purified from four genera of psittacine birds. J. Wildl. Dis. 1990, 26:196-203.
-
(1990)
J. Wildl. Dis.
, vol.26
, pp. 196-203
-
-
Ritchie, B.1
Niagro, F.2
Latimer, K.3
Lukert, P.4
Rakich, P.5
Pritchard, N.6
-
68
-
-
0037294051
-
Evidence for specificity of psittacine beak and feather disease viruses among avian hosts
-
Ritchie P.A., Anderson I.L., Lambert D.M. Evidence for specificity of psittacine beak and feather disease viruses among avian hosts. Virology 2003, 306:109-115.
-
(2003)
Virology
, vol.306
, pp. 109-115
-
-
Ritchie, P.A.1
Anderson, I.L.2
Lambert, D.M.3
-
70
-
-
79956305695
-
Dragonfly cyclovirus, a novel single-stranded DNA virus discovered in dragonflies (Odonata: Anisoptera)
-
Rosario K., Marinov M., Stainton D., Kraberger S., Wiltshire E.J., Collings D.A., Walters M., Martin D.P., Breitbart M., Varsani A. Dragonfly cyclovirus, a novel single-stranded DNA virus discovered in dragonflies (Odonata: Anisoptera). J. Gen. Virol. 2011, 92:1302-1308.
-
(2011)
J. Gen. Virol.
, vol.92
, pp. 1302-1308
-
-
Rosario, K.1
Marinov, M.2
Stainton, D.3
Kraberger, S.4
Wiltshire, E.J.5
Collings, D.A.6
Walters, M.7
Martin, D.P.8
Breitbart, M.9
Varsani, A.10
-
71
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
72
-
-
0033193712
-
Electron microscopical observations of psittacine beak and feather disease in an umbrella cockatoo (Cacatua alba)
-
Sanada Y., Sanada N., Kubo M. Electron microscopical observations of psittacine beak and feather disease in an umbrella cockatoo (Cacatua alba). J. Vet. Med. Sci. 1999, 61:1063-1065.
-
(1999)
J. Vet. Med. Sci.
, vol.61
, pp. 1063-1065
-
-
Sanada, Y.1
Sanada, N.2
Kubo, M.3
-
73
-
-
84999828472
-
Characterization of the complete genome sequence of a beak and feather disease virus from a Moluccan red lory (Eos bornea)
-
(00844-00813)
-
Sarker S., Ghorashi S.A., Forwood J.K., Metz S., Raidal S.R. Characterization of the complete genome sequence of a beak and feather disease virus from a Moluccan red lory (Eos bornea). Genome Announce. 2013, 1. (00844-00813).
-
(2013)
Genome Announce.
, vol.1
-
-
Sarker, S.1
Ghorashi, S.A.2
Forwood, J.K.3
Metz, S.4
Raidal, S.R.5
-
74
-
-
84999861023
-
Whole-genome sequences of two beak and feather disease viruses in the endangered swift parrot (Lathamus discolor)
-
(00842-00813)
-
Sarker S., Ghorashi S.A., Forwood J.K., Raidal S.R. Whole-genome sequences of two beak and feather disease viruses in the endangered swift parrot (Lathamus discolor). Genome Announce. 2013, 1. (00842-00813).
-
(2013)
Genome Announce.
, vol.1
-
-
Sarker, S.1
Ghorashi, S.A.2
Forwood, J.K.3
Raidal, S.R.4
-
75
-
-
84896931218
-
Mutability dynamics of an emergent single stranded DNA virus in a naïve host
-
Sarker S., Patterson E.I., Peters A., Baker G.B., Forwood J.K., Ghorashi S.A., Holdsworth M., Baker R., Murray N., Raidal S.R. Mutability dynamics of an emergent single stranded DNA virus in a naïve host. PLoS ONE 2014, 9:e85370.
-
(2014)
PLoS ONE
, vol.9
-
-
Sarker, S.1
Patterson, E.I.2
Peters, A.3
Baker, G.B.4
Forwood, J.K.5
Ghorashi, S.A.6
Holdsworth, M.7
Baker, R.8
Murray, N.9
Raidal, S.R.10
-
76
-
-
0020430594
-
The availability and dimensions of tree hollows that provide nest sites for cockatoos (Psittaciformes) in Western Australia
-
Saunders D.A., Smith G.T., Rowley I. The availability and dimensions of tree hollows that provide nest sites for cockatoos (Psittaciformes) in Western Australia. Aust. Wildl. Res. 1982, 9:541-546.
-
(1982)
Aust. Wildl. Res.
, vol.9
, pp. 541-546
-
-
Saunders, D.A.1
Smith, G.T.2
Rowley, I.3
-
77
-
-
33645229142
-
Phylogenetic evidence for the rapid evolution of human B19 erythrovirus
-
Shackelton L.A., Holmes E.C. Phylogenetic evidence for the rapid evolution of human B19 erythrovirus. J. Virol. 2006, 80:3666-3669.
-
(2006)
J. Virol.
, vol.80
, pp. 3666-3669
-
-
Shackelton, L.A.1
Holmes, E.C.2
-
78
-
-
12244297403
-
High rate of viral evolution associated with the emergence of carnivore parvovirus
-
Shackelton L.A., Parrish C.R., Truyen U., Holmes E.C. High rate of viral evolution associated with the emergence of carnivore parvovirus. Proc. Natl. Acad. Sci. USA 2005, 102:379-384.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 379-384
-
-
Shackelton, L.A.1
Parrish, C.R.2
Truyen, U.3
Holmes, E.C.4
-
79
-
-
38349053101
-
Beak and feather disease virus infection in cockatiels (Nymphicus hollandicus)
-
Shearer P.L., Bonne N., Clark P., Sharp M., Raidal S.R. Beak and feather disease virus infection in cockatiels (Nymphicus hollandicus). Avian Pathol. 2008, 37:75-81.
-
(2008)
Avian Pathol.
, vol.37
, pp. 75-81
-
-
Shearer, P.L.1
Bonne, N.2
Clark, P.3
Sharp, M.4
Raidal, S.R.5
-
80
-
-
0026708873
-
Analyzing the mosaic structure of genes
-
Smith J. Analyzing the mosaic structure of genes. J. Mol. Evol. 1992, 34:126-129.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 126-129
-
-
Smith, J.1
-
81
-
-
33645757817
-
Identification of a novel circovirus in Australian ravens (Corvus coronoides) with feather disease
-
Stewart M.E., Perry R., Raidal S.R. Identification of a novel circovirus in Australian ravens (Corvus coronoides) with feather disease. Avian Pathol. 2006, 35:86-92.
-
(2006)
Avian Pathol.
, vol.35
, pp. 86-92
-
-
Stewart, M.E.1
Perry, R.2
Raidal, S.R.3
-
82
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 1993, 10:512-526.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
83
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
84
-
-
1642493604
-
Avian circovirus diseases: lessons for the study of PMWS
-
Todd D. Avian circovirus diseases: lessons for the study of PMWS. Vet. Microbiol. 2004, 98:169-174.
-
(2004)
Vet. Microbiol.
, vol.98
, pp. 169-174
-
-
Todd, D.1
-
85
-
-
0037116607
-
Observation of positive selection within hypervariable regions of a newly identified DNA virus (SEN virus)
-
Umemura T., Tanaka Y., Kiyosawa K., Alter H.J., Shih J.W.-K. Observation of positive selection within hypervariable regions of a newly identified DNA virus (SEN virus). FEBS Lett. 2002, 510:171-174.
-
(2002)
FEBS Lett.
, vol.510
, pp. 171-174
-
-
Umemura, T.1
Tanaka, Y.2
Kiyosawa, K.3
Alter, H.J.4
Shih, J.W.-K.5
-
86
-
-
79955751258
-
Global genetic diversity and geographical and host-species distribution of beak and feather disease virus isolates
-
Varsani A., Regnard G.L., Bragg R., Hitzeroth I.I., Rybicki E.P. Global genetic diversity and geographical and host-species distribution of beak and feather disease virus isolates. J. Gen. Virol. 2011, 92:752-767.
-
(2011)
J. Gen. Virol.
, vol.92
, pp. 752-767
-
-
Varsani, A.1
Regnard, G.L.2
Bragg, R.3
Hitzeroth, I.I.4
Rybicki, E.P.5
-
87
-
-
0026865024
-
Preferential PCR amplification of alleles: mechanisms and solutions
-
Walsh P.S., Erlich H.A., Higuchi R. Preferential PCR amplification of alleles: mechanisms and solutions. Genome Res. 1992, 1:241-250.
-
(1992)
Genome Res.
, vol.1
, pp. 241-250
-
-
Walsh, P.S.1
Erlich, H.A.2
Higuchi, R.3
-
88
-
-
79955474497
-
The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae)
-
White N.E., Phillips M.J., Gilbert M.T.P., Alfaro-Núñez A., Willerslev E., Mawson P.R., Spencer P.B.S., Bunce M. The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae). Mol. Phylogen. Evol. 2011, 59:615-622.
-
(2011)
Mol. Phylogen. Evol.
, vol.59
, pp. 615-622
-
-
White, N.E.1
Phillips, M.J.2
Gilbert, M.T.P.3
Alfaro-Núñez, A.4
Willerslev, E.5
Mawson, P.R.6
Spencer, P.B.S.7
Bunce, M.8
-
89
-
-
52449084460
-
A multilocus molecular phylogeny of the parrots (Psittaciformes): support for a Gondwanan origin during the cretaceous
-
Wright T.F., Schirtzinger E.E., Matsumoto T., Eberhard J.R., Graves G.R., Sanchez J.J., Capelli S., Muller H., Scharpegge J., Chambers G.K., Fleischer R.C. A multilocus molecular phylogeny of the parrots (Psittaciformes): support for a Gondwanan origin during the cretaceous. Mol. Biol. Evol. 2008, 25:2141-2156.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 2141-2156
-
-
Wright, T.F.1
Schirtzinger, E.E.2
Matsumoto, T.3
Eberhard, J.R.4
Graves, G.R.5
Sanchez, J.J.6
Capelli, S.7
Muller, H.8
Scharpegge, J.9
Chambers, G.K.10
Fleischer, R.C.11
-
90
-
-
0032867185
-
A universal polymerase chain reaction for the detection of psittacine beak and feather disease virus
-
Ypelaar I., Bassami M.R., Wilcox G.E., Raidal S.R. A universal polymerase chain reaction for the detection of psittacine beak and feather disease virus. Vet. Microbiol. 1999, 68:141-148.
-
(1999)
Vet. Microbiol.
, vol.68
, pp. 141-148
-
-
Ypelaar, I.1
Bassami, M.R.2
Wilcox, G.E.3
Raidal, S.R.4
-
91
-
-
0345328128
-
Gene sequences useful for predicting relatedness of whole genomes in bacteria
-
Zeigler D.R. Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int. J. Syst. Evol. Microbiol. 2003, 53:1893-1900.
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 1893-1900
-
-
Zeigler, D.R.1
|