Beak and feather disease virus and porcine circovirus genomes: Intermediates between the geminiviruses and plant circoviruses

Archives of Virology

Volumn 143, Issue 9, 1998, Pages 1723-1744

  Niagro, F D ^a,c   Forsthoefel, A N ^b   Lawther, R P ^b   Kamalanathan, L ^a   Ritchie, B W ^a   Latimer, K S ^a   Lukert, P D ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b UNIVERSITY OF SOUTH CAROLINA   (United States)

^c EISENHOWER ARMY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCOVIRIDAE; GEMINIVIRUS; PATHOGENESIS; PLANT CIRCOVIRUS; VIRUS GENOME; VIRUS INFECTION;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BIRDS; CIRCOVIRUS; DNA REPLICATION; DNA, VIRAL; GEMINIVIRIDAE; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLANTS; SWINE;

EID: 0031660490     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050412     Document Type: Article

References (64)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410
2. Ambrose BJB, Pless RC (1987) DNA sequencing: Chemical methods. Methods Immunol 152: 522-538
3. Arguello-Astorga, GR, Guevara-Gonsalez RG, Herrera-Estrella LR, Rivera-Bustamante RF (1994) Geminivirus replication origins have a group-specific organization of iterative elements: a model for replication. Virology 203: 90-100
4. Beetham PR, Hafner GJ, Harding RM, Dale JL (1997) Two mRNAs are transcribed from banana bunchy top virus DNA-1. J Gen Virol 78: 229-236
5. Boevink P, Chu PWG, Keese P (1995) Sequence of subterranean clover stunt virus DNA: affinities with the geminiviruses. Virology 207: 354-361
6. Bork P, Koonin EV (1994) A p-loop-like motif in a widespread ATP pyrophosphatase domain: implications for the evolution of sequence motifs and enzyme activity. Proteins Struct Funct Genet 20: 347-355
7. Briddon RW, Markham PG (1995) The Geminiviridae. In: Murphy FA, Fauquet CM, Bishop DHL, Ghabrial SA, Jarvis AW, Martelli GP, Mayo MA, Summers MD (eds.) Virus Taxonomy. Classification and Nomenclature of Viruses. Sixth Report of the International Committee on Taxonomy of Viruses. Springer, Wien New York, pp 158-165 (Arch Virol [Suppl] 10)
8. Brunt A, Crabtree K, Dallwitz M, Gibbs A, Watson L (1996) Viruses of plants: descriptions and lists from the VIDE database. CAB International, Wallingford (URL: http: //biology.anu.edu.au/research-groups/MES/vide/refs.htm)
9. Buhk HJ, Mankertz A (1996) Sequence analysis of porcine circovirus. Unpublished (GenBank Accession no. Y09921)
10. Burns TM, Harding RM, Dale JL (1995) The genome organization of banana bunchy top virus: analysis of six ssDNA components. J Gen Virol 76: 1 471-1 482.
11. Chakrabarti P (1990) Geometry of interaction of metal ions with histidine residues in protein structures. Protein Eng. 4: 57-63
12. Chu PWG, Helms K (1998) Novel virus-like particles containing circular single-stranded DNAs associated with subterranean clover stunt disease. Virology 167: 38-49
13. Chu PWG, Keese P, Qiu BS, Waterhouse PM, Gerlach WL (1993) Putative full-length clones of the genomic DNA segments of subterranean clover stunt virus and identification of the segment coding for the viral coat protein. Virus Res 27: 161-171
14. Clark CG (1997) Post-weaning multisystemic wasting syndrome. In: Proceedings of the American Association of Swine Practitioners, Quebec City, Canada, pp 499-501
15. Daft B, Nordhausen RW, Latimer KS, Niagro FD (1996) Interstitial pneumonia and lymphadenopathy associated with circoviral infection in a 6-week old pig. In: Proceedings of the Annual Meeting of the American Association of Veterinary Laboratory Diagnosticians, Little Rock, Arkansas, p 32
16. Dahlhausen B, Radabaugh S (1993) Update on psittacine beak and feather disease and avian polyomavirus testing. Proceedings of the Association of Avian Veterinarians, Nashville, TN, pp 5-7
17. Dale JL (1987) Banana bunchy top: an economically important tropical plant virus disease. Adv Virus Res 33: 301-325
18. Desbiez C, David C, Mettoughi A, Laufs J, Gronenborn B (1995) Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication. Proc Natl Acad Sci USA 92: 5 640-5 644
19. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12: 387-395
20. Douglas AJ, Phenix K, Mawhinney KA, Todd D, Mackie DP, Curran WL (1995) Identification of a 24 kDa protein expressed by chicken anemia virus. J Gen Virol 76: 1 557-1 562
21. Felsenstein J (1993) PHYLIP version 3.5c, Univ. of Washington, Seattle, WA
22. Genetics Computer Group (1994) Manual for the Wisconsin Package, version 8. Genetics Computer Group, Madison, WI.
23. Greenacre CB, Latimer KS, Niagro FD, Campagnoli RP. D, Pesti D, Ritchie BW (1992) Psittacine beak and feather disease in a scarlet macaw (Ara macao). J Assoc Avian Vet 6: 95-98
24. Hermodson M, Abad-Zapatero C, Abdel-Meguid SS, Pundak S, Rossmann MG, Tremaine JH (1982) Amino acid sequence of southern bean mosaic virus coat protein and its relation to the three-dimensional structure of the virus. Virology 119: 133-149
25. Heyraud-Nitschke F, Schumacher S, Laufs J, Schaeter S, Schell J, Gronenborn B (1995) Determination of the origin cleavage and joining domain of geminivirus Rep proteins. Nucleic Acids Res 23: 910-916
26. Hines RK, Lukert PD (1997) Porcine circovirus as a cause of congential tremors in newborn pigs. In: Proceedings of the American Association of Swine Practitioners, Quebec City, Canada, p 344
27. Hodgman TC (1988) A new superfamily of replicative proteins. Nature 333: 22-23
28. Ilyina TV, Koonin EV (1992) Conserved sequence motifs in the initiator proteins for rolling circle replication encoded by diverse replicons from eubacteria, eucaryotes and archebacteria. Nucleic Acids Res 20: 3 279-3 285
29. Karan M, Harding RM, Dale JL (1994) Evidence for two groups of banana bunchy top virus. J Gen Virol 75: 3 541-3 546
30. Katul L, Maiss E, Vetten HJ (1995). Sequence analysis of faba bean necrotic yellows virus DNA component containing a putative replicase gene. J Gen Virol 76: 475-479
31. Katul L, Maiss E, Morozov SY, Vetten HJ (1997) Analysis of six DNA components of the faba bean necrotic yellows virus genome and their structural affinity to related plant virus genomes. Virology 233: 247-259
32. Koch G, van Roozelaar DJ, Verschueren CAJ, van der Eb AJ, Noteborn MHM (1995) Immunogenic and protective properties of chicken anemia virus proteins expressed by baculovirus. Vaccine 8: 763-770
33. Latimer KS, Niagro FD, Rakich PM, Campagnoli RP, Ritchie BW, Steffens WL, Pesti D, Lukert PD (1992) Comparison of DNA dot-blot hybridization, immunoperoxidase staining and routine histopathology in the diagnosis of psittacine beak and feather disease in paraffin-embedded cutaneous tissues. J Assoc Avian Vet 6: 165-168
34. Laufs J, Traut W, Heyraud F, Matzeit V, Rogers SG, Schell J, Gronenborn B (1995) In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc Natl Acad Sci USA 92: 3 879-3 883
35. Lukert PD, de Boer GF, Dale JL, Keese P, McNulty MS, Randles JW, Tisher I (1995) The Circoviridae. In: Murphy FA, Fauquet CM, Bishop DHL, Ghabrial SA, Jarvis AW, Martelli GP, Mayo MA, Summers MD (eds) Virus Taxonomy. Classification and Nomenclature of Viruses. Sixth Report of the International Committee on Taxonomy of Viruses. Springer, Wien New York, pp 166-168 (Arch Virol [Suppl] 10)
36. Mankertz J, Buhk HJ (1990) Transcriptional analysis of porcine circovirus (PCV). VIIIth International Congress of Virology, Abstracts, p 380
37. Mankertz A, Persson F, Mankertz J, Blaess G, Buhk HJ (1997) Mapping and characterization of the origin of DNA replication of porcine circovirus. J Virol 71:2 562-2 566
38. Mayo MA, Robinson DJ, Jolly CA, Hyman L (1989) Nucleotide sequence of potato leafroll luteovirus RNA. J Gen Virol 70; 1 037-1 051
39. Meehan BM, Todd D, Creelan JL, Earle JAP, Hoey EM, McNulty MS (1992) Characterization of viral DNAs from cells infected with chicken anemia agent: sequence analysis of the cloned replicative form and transfection capabilities of cloned genome fragments. Arch Virol 124: 301-319
40. Meehan BM, Creelan JL, McNulty MS, Todd D (1997) Sequence of porcine circovirus DNA: affinities with plant circoviruses. J Gen Virol 78: 221-227
41. Merits A, Zelenina DA, Mizenina OA, Chernov BK, Morozov SY (1995) Poly(A) addition site mapping and polyadenylation signal analysis in a plant circovirus replication-related gene. Virology 211: 345-349
42. Myers EW, Miller W (1988) Optimal alignments in linear space. CABIOS 4: 11-17
43. Nayar GP, Hamel A, Lin L (1997) Detection and characterization of porcine circovirus associated with post weaning multisystemic wasting syndrome in pigs. Can Vet J 38: 385-386
44. Niagro FD (1993) Unpublished data
45. Noteborn MHM, de Boer GF, van Roozelaar DJ, Karreman C, Kranenburg O, Vos JG, Jeurissen HM, Hoeben RC, Zantema A, Koch G, van Ormondt H, van der Eb AJ (1991) Characterization of cloned chicken anemia virus DNA that contains all elements for the infectious replication cycle. J Virol 65: 3 131-3 139
46. Noteborn MHM, Todd D, Verschueren CAJ, de Gauw HWFM, Curran WL, Veldkamp S, Douglas AJ, McNulty MS, van der Eb AJ, Koch G (1994) A single chicken anemia virus protein causes apoptosis. J Virol 68: 346-351
47. Oliva R, Goren R, Dixon GH (1989) Quail (Cotournix japonica) protamine, full-length cDNA sequence, and the function and evolution of vertebrate protamines. J Biol Chem 264: 17627-17630
48. Padidam M, Beachy RN, Fauquet C (1995) Classification and identification of geminiviruses using sequence comparisons. J Gen Virol 76: 249-263
49. Phenix KV, Meehan BL, Todd D, McNulty MS (1994) Transcriptional analysis and genome expression of chicken anemia virus. J Gen Virol 75: 905-909
50. Raidal SR, McElenea CL, Cross GM (1993) Seroprevalence of psittacine beak and feather disease in wild psittacine birds in new south wales. Aust Vet J 70: 137-139
51. Ramis A, Latimer KS, Niagro FD, Campagnoli RP, Ritchie BW, Pesti D (1994) Diagnosis of psittacine beak and feather disease (PBFD) viral infection, avian polyomavirus infection, adenovirus infection and herpesvirus infection in psittacine tissues using DNA in situ hybridization. Avian Pathol 23: 643-657
52. Randles JW, Hanold D (1989) Coconut foliar decay virus particles are 20-nm icosahedra. Intervirology 30: 177-180
53. Ritchie BW, Niagro FD, Lukert PD, Steffens WL, Latimer KS (1989) Characterization of a new virus from cockatoos with psittacine beak and feather disease. Virology 171: 83-88
54. Ritchie BW (1995) Avian viruses: function and control. Wingers Publishing, Lake Worth
55. Rohde W, Randles JW, Langridge P, Hanold D (1990). Nucleotide sequence of a circular single-stranded DNA associated with coconut foliar decay virus. Virology 176: 648-651
56. Rohwer RG (1991) The scrapie agent: "a virus by any other name". Curr Top Microbiol Immunol 172: 195-231
57. Shivaprasad HL, Chin RP, Jeffrey JS, Latimer KS, Nordhausen RW, Niagro FD, Campagnoli RP (1994) Particles resembling circovirus in the bursa of fabricius of pigeons. Avian Dis 38: 635-641
58. Timmermans MCP, Das OP, Messing J (1994) Geminiviruses and their uses as extrachromosomal replicons. Ann Rev Plant Physiol Plant Mol Biol 45: 79-112
59. Tischer I, Bode L, Apodaca J, Timm H, Rasch R, Pociulli S, Gerike E (1995) Presence of antibodies reacting with porcine circovirus in sera of humans, mice, and cattle. Arch Virol 140: 1427-1439
60. Todd DL, Niagro FD, Ritchie BW, Curran W, Allan GM, Lukert PD, Latimer KS, Steffens WL, McNulty MS (1991) Comparison of three animal viruses with circular single-stranded DNA genomes. Arch Virol 117: 129-135
61. Wilson ME, Mainprize TH, Friesen PS, Miller LK (1987) Location, transcription, and sequence of a baculovirus gene encoding a small arginine-rich polyprotein. J Virol 61: 661-666
62. Woods LW, Latimer KS, Niagro FD, Riddle C, Crowley AM, Anderson ML, Daft BM, Moore JD, Campagnoli RP, Nordhausen RW (1994) A retrospective study of circovirus infection in pigeons: nine cases (1986-1993). J Vet Diagn Invest 6: 156-164
63. Xie WS, Hu JS (1995) Molecular cloning, sequence analysis, and detection of a banana bunchy top virus in Hawaii. Phytopathology 85: 339-347
64. Yeh HH, Su HJ, Chao YC (1994) Genome characterization and identification of viral-associated dsDNA component of banana bunchy top virus. Virology 198: 645-652