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Volumn 52, Issue 3, 2014, Pages 351-358

Validation of a quick PCR method suitable for direct sequencing: Identification of Fusarium fungal species and chemotypes for preventive approaches in food safety

Author keywords

EF1 ; Fusarium culmorum; Fusarium graminearum; Microwave DNA extraction

Indexed keywords

DNA SEQUENCES; FOOD SAFETY; POLYMERASE CHAIN REACTION;

EID: 84901410915     PISSN: 13309862     EISSN: 13342606     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (9)

References (48)
  • 2
    • 33646588978 scopus 로고    scopus 로고
    • Identification and quantification of mycotoxigenic fungi by PCR
    • R. Russell, M. Paterson, Identification and quantification of mycotoxigenic fungi by PCR, Process Biochem. 41 (2006) 1467-1474.
    • (2006) Process Biochem , vol.41 , pp. 1467-1474
    • Russell, R.1    Paterson, M.2
  • 3
    • 0037047046 scopus 로고    scopus 로고
    • Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium
    • T.J. Ward, J.P. Bielawski, H.C. Kistler, E. Sullivan, K. O'Donnell, Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium, PNAS, 99 (2002) 9278-9283.
    • (2002) PNAS , vol.99 , pp. 9278-9283
    • Ward, T.J.1    Bielawski, J.P.2    Kistler, H.C.3    Sullivan, E.4    O'Donnell, K.5
  • 4
    • 74749086418 scopus 로고    scopus 로고
    • Genetic Fusarium chemotyping as a useful tool for predicting nivalenol contamination in winter wheat
    • M. Pasquali, F. Giraud, C. Brochot, E. Cocco, L. Hoffmann, T. Bohn, Genetic Fusarium chemotyping as a useful tool for predicting nivalenol contamination in winter wheat, Int. J. Food Microbiol. 137 (2010) 246-253.
    • (2010) Int. J. Food Microbiol , vol.137 , pp. 246-253
    • Pasquali, M.1    Giraud, F.2    Brochot, C.3    Cocco, E.4    Hoffmann, L.5    Bohn, T.6
  • 5
    • 0242573229 scopus 로고    scopus 로고
    • Toxicity and apoptosis induced by the mycotoxins nivalenol, deoxynivalenol and fumonisin B1 in a human erythroleukemia cell line
    • F. Minervini, F. Fornelli, K.M. Flynn, Toxicity and apoptosis induced by the mycotoxins nivalenol, deoxynivalenol and fumonisin B1 in a human erythroleukemia cell line, Toxicol. in vitro, 18 (2004) 21-28.
    • (2004) Toxicol. in vitro , vol.18 , pp. 21-28
    • Minervini, F.1    Fornelli, F.2    Flynn, K.M.3
  • 6
    • 0041704808 scopus 로고    scopus 로고
    • A modified DNA extraction minipreparation protocol for Fusarium isolates
    • K.A. Abd Elsalam, F. Schnieder, J. Guo, A modified DNA extraction minipreparation protocol for Fusarium isolates, J. Rapid Meth. Aut. Mic. 11 (2003) 75-79.
    • (2003) J. Rapid Meth. Aut. Mic. , vol.11 , pp. 75-79
    • Abd Elsalam, K.A.1    Schnieder, F.2    Guo, J.3
  • 7
    • 64749111354 scopus 로고    scopus 로고
    • A quick and safe method for fungal DNA extraction
    • M.H. Chi, S.Y. Park, Y.H. Lee, A quick and safe method for fungal DNA extraction, Plant Pathol. J. 25 (2009) 108-111.
    • (2009) Plant Pathol. J. , vol.25 , pp. 108-111
    • Chi, M.H.1    Park, S.Y.2    Lee, Y.H.3
  • 9
    • 0026519029 scopus 로고
    • Rapid extraction of fungal DNA for PCR amplification
    • J.L. Cenis, Rapid extraction of fungal DNA for PCR amplification, Nucl. Acids Res. 20 (1992) 2380.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 2380
    • Cenis, J.L.1
  • 10
    • 0026495490 scopus 로고
    • A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues
    • E.M. Möller, G. Bahnweg, H. Sandermann, H.H. Geiger, A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues, Nucl. Acids Res. 20 (1992) 6115-6116.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 6115-6116
    • Möller, E.M.1    Bahnweg, G.2    Sandermann, H.3    Geiger, H.H.4
  • 12
    • 0030250587 scopus 로고    scopus 로고
    • Isolation of Fusarium DNA for molecular analysis with and without mechanical cell disruption
    • M. De Nijs, L. Nabben, K. Wernars, Isolation of Fusarium DNA for molecular analysis with and without mechanical cell disruption, J. Microbiol. Methods, 27 (1996) 13-17.
    • (1996) J. Microbiol. Methods , vol.27 , pp. 13-17
    • De Nijs, M.1    Nabben, L.2    Wernars, K.3
  • 13
    • 0001890167 scopus 로고    scopus 로고
    • Rapid procedure for the extraction of DNA from fungal spores and mycelia
    • J.J. Weiland, Rapid procedure for the extraction of DNA from fungal spores and mycelia, Fungal Genet. Newslett. 44 (1997) 60-63.
    • (1997) Fungal Genet. Newslett. , vol.44 , pp. 60-63
    • Weiland, J.J.1
  • 14
    • 0031841309 scopus 로고    scopus 로고
    • The development of a rapid PCR assay for detection of Fusarium moniliforme
    • I. Murillo, L. Cavallarin, B. San Segundo, The development of a rapid PCR assay for detection of Fusarium moniliforme, Eur. J. Plant Pathol. 104 (1998) 301-311.
    • (1998) Eur. J. Plant Pathol. , vol.104 , pp. 301-311
    • Murillo, I.1    Cavallarin, L.2    San Segundo, B.3
  • 15
    • 0032925082 scopus 로고    scopus 로고
    • DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi
    • O.F. Cubero, A. Crespo, J. Fatehi, P.D. Bridge, DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi, Plant Syst. Evol. 216 (1999) 243-249.
    • (1999) Plant Syst. Evol. , vol.216 , pp. 243-249
    • Cubero, O.F.1    Crespo, A.2    Fatehi, J.3    Bridge, P.D.4
  • 16
    • 0033834278 scopus 로고    scopus 로고
    • A simple and sensitive method to extract bacterial, yeast and fungal DNA from blood culture material
    • B.C. Millar, X. Jiru, J.E. Moore, J.A.P. Earle, A simple and sensitive method to extract bacterial, yeast and fungal DNA from blood culture material, J. Microbiol. Methods, 42 (2000) 139-147.
    • (2000) J. Microbiol. Methods , vol.42 , pp. 139-147
    • Millar, B.C.1    Jiru, X.2    Moore, J.E.3    Earle, J.A.P.4
  • 17
    • 0036273711 scopus 로고    scopus 로고
    • Evaluation of rapid DNA extraction methods for the quantitative detection of fungi using real-time PCR analysis
    • R.A. Haugland, N. Brinkman, S.J. Vesper, Evaluation of rapid DNA extraction methods for the quantitative detection of fungi using real-time PCR analysis, J. Microbiol. Methods, 50 (2002) 319-323.
    • (2002) J. Microbiol. Methods , vol.50 , pp. 319-323
    • Haugland, R.A.1    Brinkman, N.2    Vesper, S.J.3
  • 18
    • 1142285316 scopus 로고    scopus 로고
    • A rapid DNA extraction method for PCR identification of fungal indoor air contaminants
    • T.R. Dean, D. Betancourt, M.Y. Menetrez, A rapid DNA extraction method for PCR identification of fungal indoor air contaminants, J. Microbiol. Methods, 56 (2004) 431-434.
    • (2004) J. Microbiol. Methods , vol.56 , pp. 431-434
    • Dean, T.R.1    Betancourt, D.2    Menetrez, M.Y.3
  • 20
    • 77953482272 scopus 로고    scopus 로고
    • A simple method of genomic DNA extraction suitable for analysis of bulk fungal strains
    • Y.J. Zhang, S. Zhang, X.Z. Liu, H.A. Wen, M. Wang, Y.J. Zhang et al., A simple method of genomic DNA extraction suitable for analysis of bulk fungal strains, Lett. Appl. Microbiol. 51 (2010) 114-118.
    • (2010) Lett. Appl. Microbiol. , vol.51 , pp. 114-118
    • Zhang, Y.J.1    Zhang, S.2    Liu, X.Z.3    Wen, H.A.4    Wang, M.5    Zhang, Y.J.6
  • 21
    • 0021695885 scopus 로고
    • Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics
    • M.A. Saghai-Maroof, K.M. Soliman, R.A. Jorgensen, R.W. Allard, Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics, PNAS, 81 (1984) 8014-8018.
    • (1984) PNAS , vol.81 , pp. 8014-8018
    • Saghai-Maroof, M.A.1    Soliman, K.M.2    Jorgensen, R.A.3    Allard, R.W.4
  • 22
    • 0030988951 scopus 로고    scopus 로고
    • Phylogenetic relationships among ascomycetous truffles and the true and false morels inferred from 18S and 28S ribosomal DNA sequence analysis
    • K. O'Donnell, E. Cigelnik, N.S. Weber, J.M. Trappe, Phylogenetic relationships among ascomycetous truffles and the true and false morels inferred from 18S and 28S ribosomal DNA sequence analysis, Mycologia, 89 (1997) 48-65.
    • (1997) Mycologia , vol.89 , pp. 48-65
    • O'Donnell, K.1    Cigelnik, E.2    Weber, N.S.3    Trappe, J.M.4
  • 23
    • 0030727942 scopus 로고    scopus 로고
    • Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques
    • S.M. Aljanabi, I. Martinez, Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques, Nucl. Acids Res. 25 (1997) 4692-4693.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 4692-4693
    • Aljanabi, S.M.1    Martinez, I.2
  • 26
    • 0030656616 scopus 로고    scopus 로고
    • Comparison of different methods for extraction of DNA of fungal pathogens from cultures and blood
    • J. Löffler, H. Hebart, U. Schumacher, H. Reitze, H. Einsele, Comparison of different methods for extraction of DNA of fungal pathogens from cultures and blood, J. Clin. Microbiol. 35 (1997) 3311-3312.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 3311-3312
    • Löffler, J.1    Hebart, H.2    Schumacher, U.3    Reitze, H.4    Einsele, H.5
  • 27
    • 0036668544 scopus 로고    scopus 로고
    • A review of nucleic acid-based diagnostic tests for systemic mycoses with an emphasis on polymerase chain reaction-based assays
    • S.C.A. Chen, C.L. Halliday, W. Meyer, A review of nucleic acid-based diagnostic tests for systemic mycoses with an emphasis on polymerase chain reaction-based assays, Med. Mycol. 40 (2002) 333-357.
    • (2002) Med. Mycol. , vol.40 , pp. 333-357
    • Chen, S.C.A.1    Halliday, C.L.2    Meyer, W.3
  • 28
    • 0036259740 scopus 로고    scopus 로고
    • Automated extraction of genomic DNA from medically important yeast species and filamentous fungi by using the MagNA Pure LC System
    • J. Loeffler, K. Schmidt, H. Hebart, U. Schumacher, H. Einsele, Automated extraction of genomic DNA from medically important yeast species and filamentous fungi by using the MagNA Pure LC System, J. Clin. Microbiol. 40 (2002) 2240-2243.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 2240-2243
    • Loeffler, J.1    Schmidt, K.2    Hebart, H.3    Schumacher, U.4    Einsele, H.5
  • 29
    • 0344211422 scopus 로고    scopus 로고
    • Direct quantification of fungal DNA from soil substrate using real-time PCR
    • M. Filion, M. St-Arnaud, S.H. Jabaji-Hare, Direct quantification of fungal DNA from soil substrate using real-time PCR, J. Microbiol. Methods, 53 (2003) 67-76.
    • (2003) J. Microbiol. Methods , vol.53 , pp. 67-76
    • Filion, M.1    St-Arnaud, M.2    Jabaji-Hare, S.H.3
  • 30
    • 4644226919 scopus 로고    scopus 로고
    • Simple chemical extraction method for DNA isolation from Aspergillus fumigatus and other Aspergillus species
    • J. Jin, Y.K. Lee, and B.L. Wickes, Simple chemical extraction method for DNA isolation from Aspergillus fumigatus and other Aspergillus species, J. Clin. Microbiol. 42 (2004) 4293-4296.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 4293-4296
    • Jin, J.1    Lee, Y.K.2    Wickes, B.L.3
  • 31
    • 3142682262 scopus 로고    scopus 로고
    • Comparison of different methods of isolation of DNA of commonly encountered Candida species and its quantitation by using a Real-Time PCR-based assay
    • Y. Maaroufi, N. Ahariz, M. Husson, F. Crokaert, Comparison of different methods of isolation of DNA of commonly encountered Candida species and its quantitation by using a Real-Time PCR-based assay, J. Clin. Microbiol. 42 (2004) 3159-3163.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 3159-3163
    • Maaroufi, Y.1    Ahariz, N.2    Husson, M.3    Crokaert, F.4
  • 32
    • 26944433790 scopus 로고    scopus 로고
    • Comparison of six DNA extraction methods for recovery of fungal DNA as assessed by quantitative PCR
    • D.N. Fredricks, C. Smith, A. Meier, Comparison of six DNA extraction methods for recovery of fungal DNA as assessed by quantitative PCR, J. Clin. Microbiol. 43 (2005) 5122- 5128.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 5122-5128
    • Fredricks, D.N.1    Smith, C.2    Meier, A.3
  • 33
    • 34250702572 scopus 로고    scopus 로고
    • Comparison of four different methods for extraction of Stachybotrys chartarum spore DNA and verification by real-time PCR
    • J.A. Black, K.K. Foarde, Comparison of four different methods for extraction of Stachybotrys chartarum spore DNA and verification by real-time PCR, J. Microbiol. Methods, 70 (2007) 75-81.
    • (2007) J. Microbiol. Methods , vol.70 , pp. 75-81
    • Black, J.A.1    Foarde, K.K.2
  • 34
    • 70449635966 scopus 로고    scopus 로고
    • First report of the nivalenol chemotype of Fusarium graminearum causing head blight of wheat in the Grand Duchy of Luxembourg
    • M. Pasquali, F. Giraud, C. Brochot, L. Hoffmann, T. Bohn, First report of the nivalenol chemotype of Fusarium graminearum causing head blight of wheat in the Grand Duchy of Luxembourg, Plant Dis. 93 (2009) 1217.
    • (2009) Plant Dis , vol.93 , pp. 1217
    • Pasquali, M.1    Giraud, F.2    Brochot, C.3    Hoffmann, L.4    Bohn, T.5
  • 35
    • 79955646081 scopus 로고    scopus 로고
    • Evidence for natural resistance towards trifloxystrobin in Fusarium graminearum
    • T. Dubos, M. Pasquali, F. Pogoda, L. Hoffmann, M. Beyer, Evidence for natural resistance towards trifloxystrobin in Fusarium graminearum, Eur. J. Plant Pathol. 130 (2011) 239- 248.
    • (2011) Eur. J. Plant Pathol. , vol.130 , pp. 239-248
    • Dubos, T.1    Pasquali, M.2    Pogoda, F.3    Hoffmann, L.4    Beyer, M.5
  • 36
    • 0000856986 scopus 로고
    • Taylor: Isolation of DNA from Fungal Mycelia and Single Spores. In: PCR Protocols, M. Innis, D. Gelfand, J. Sninsky, T. White (Eds.), Academic Press, Orlando, FL
    • S.B. Lee, J. Taylor: Isolation of DNA from Fungal Mycelia and Single Spores. In: PCR Protocols, M. Innis, D. Gelfand, J. Sninsky, T. White (Eds.), Academic Press, Orlando, FL, USA (1990) pp. 282-287.
    • (1990) USA
    • Lee, S.B.J.1
  • 37
    • 0027257568 scopus 로고
    • Microwave miniprep of total genomic DNA from fungi, plants, protists and animals for PCR
    • D.C. Goodwin, S.B. Lee, Microwave miniprep of total genomic DNA from fungi, plants, protists and animals for PCR, BioTechniques, 15 (1993) 438-441.
    • (1993) BioTechniques , vol.15 , pp. 438-441
    • Goodwin, D.C.1    Lee, S.B.2
  • 38
    • 0002221282 scopus 로고    scopus 로고
    • PCR from fungal spores after microwave treatment
    • A.V.B. Ferreira, N.L. Glass, PCR from fungal spores after microwave treatment, Fungal Genet. Newslett. 43 (1996) 25- 26.
    • (1996) Fungal Genet. Newslett. , vol.43 , pp. 25-26
    • Ferreira, A.V.B.1    Glass, N.L.2
  • 40
    • 77952673696 scopus 로고    scopus 로고
    • An improved protocol for the preparation of total genomic DNA from isolates of yeast and mould using Whatman FTA Filter Papers
    • A. Borman, M. Fraser, C. Linton, M. Palmer, E. Johnson, An improved protocol for the preparation of total genomic DNA from isolates of yeast and mould using Whatman FTA Filter Papers, Mycopathologia, 169 (2010) 445-449.
    • (2010) Mycopathologia , vol.169 , pp. 445-449
    • Borman, A.1    Fraser, M.2    Linton, C.3    Palmer, M.4    Johnson, E.5
  • 41
    • 80053133337 scopus 로고    scopus 로고
    • Prediction and early detection of mycotoxigenic Fusarium culmorum in wheat by direct PCR-based procedure
    • A. Ben Amar, S. Oueslati, A. Ghorbel, A. Mliki, Prediction and early detection of mycotoxigenic Fusarium culmorum in wheat by direct PCR-based procedure, Food Control, 23 (2012) 506-510.
    • (2012) Food Control , vol.23 , pp. 506-510
    • Ben Amar, A.1    Oueslati, S.2    Ghorbel, A.3    Mliki, A.4
  • 42
    • 0028982069 scopus 로고
    • Fusarium ear blight (scab) in small grain cereals - A review
    • D.W. Parry, P. Jenkinson, L. McLeod, Fusarium ear blight (scab) in small grain cereals - A review, Plant Pathol. 44 (1995) 207-238.
    • (1995) Plant Pathol , vol.44 , pp. 207-238
    • Parry, D.W.1    Jenkinson, P.2    McLeod, L.3
  • 43
    • 0036295537 scopus 로고    scopus 로고
    • Cytotoxicity assays for mycotoxins produced by Fusarium strains: A review
    • A.C. Gutleb, E. Morrison, A.J. Murk, Cytotoxicity assays for mycotoxins produced by Fusarium strains: A review, Environ. Toxicol. Phar. 11 (2002) 309-320.
    • (2002) Environ. Toxicol. Phar. , vol.11 , pp. 309-320
    • Gutleb, A.C.1    Morrison, E.2    Murk, A.J.3
  • 44
    • 0032478185 scopus 로고    scopus 로고
    • Multiple evolutionary origins of the fungus causing panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies
    • K. O'Donnell, H.C. Kistler, E. Cigelnik, R.C. Ploetz, Multiple evolutionary origins of the fungus causing panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies, PNAS, 95 (1998) 2044- 2049.
    • (1998) PNAS , vol.95 , pp. 2044-2049
    • O'Donnell, K.1    Kistler, H.C.2    Cigelnik, E.3    Ploetz, R.C.4
  • 45
    • 39749180997 scopus 로고    scopus 로고
    • An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminearum in North America
    • T.J. Ward, R.M. Clear, A.P. Rooney, K. O'Donnell, D. Gaba, S. Patrick et al., An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminearum in North America, Fungal Genet. Biol. 45 (2008) 473-484.
    • (2008) Fungal Genet. Biol. , vol.45 , pp. 473-484
    • Ward, T.J.1    Clear, R.M.2    Rooney, A.P.3    O'Donnell, K.4    Gaba, D.5    Patrick, S.6
  • 46
    • 80052447441 scopus 로고    scopus 로고
    • Comparative analysis of genetic chemotyping methods for Fusarium: Tri13 polymorphism does not discriminate between 3- and 15-acetylated deoxynivalenol chemotypes in Fusarium graminearum
    • M. Pasquali, M. Beyer, T. Bohn, L. Hoffmann, Comparative analysis of genetic chemotyping methods for Fusarium: Tri13 polymorphism does not discriminate between 3- and 15-acetylated deoxynivalenol chemotypes in Fusarium graminearum, J. Phytopathol. 159 (2011) 700-704.
    • (2011) J. Phytopathol. , vol.159 , pp. 700-704
    • Pasquali, M.1    Beyer, M.2    Bohn, T.3    Hoffmann, L.4
  • 47
    • 84906752901 scopus 로고    scopus 로고
    • Fusarium Database, FUSARIUM-ID, Pennsylvania State University, PA, USA
    • Fusarium Database, FUSARIUM-ID, Pennsylvania State University, PA, USA, (http://isolate.fusariumdb.org/blast.php).
  • 48
    • 84906752902 scopus 로고    scopus 로고
    • GenBank BLAST Search, National Center for Biotechnology Information (NCBI), Bethesda, MD, USA
    • GenBank BLAST Search, National Center for Biotechnology Information (NCBI), Bethesda, MD, USA (http://www. ncbi.nlm.nih.gov/BLAST/).


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