DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi

Plant Systematics and Evolution

Volumn 216, Issue 3-4, 1999, Pages 243-249

  Cubero, Oscar F ^a   Crespo, Ana ^a   Fatehi, Jamshid ^b   Bridge, Paul D ^b  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

^b CABI   (United Kingdom)

Author keywords

DNA extraction; Filamentous fungi; Herbarium; Lichenized fungi

Indexed keywords

CULTURE TECHNIQUE; DNA AMPLIFICATION; DNA EXTRACTION; PLANT PATHOGEN INTERACTION;

ASCOCHYTA; PARMELIA; PHYLLOSTICTA; PHYSCONIA; RAMALINA;

EID: 0032925082     PISSN: 03782697     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF01084401     Document Type: Article

References (20)

1. ARMALEO, D., CLERC, P., 1991: Lichen chimeras; DNA analysis suggests that one fungus forms two morphotypes. - Exp. Mycol. 15: 1-10.
2. _ 1995: A rapid and inexpensive method for the purification of DNA from lichens and their symbionts. - Lichenologist 27: 207-213.
3. BRUNS, T. D., FOGEL, R., TAYLOR, J. W., 1990: Amplification and sequencing of DNA from fungal herbarium specimens. - Mycologia 82: 175-184.
4. COOPER, A., 1994: DNA from museum specimens. - In HERRMAN, B., HUMMEL, S., (Eds): Ancient DNA. - Berlin, Heidelberg, New York: Springer.
5. CRESPO, A., BRIDGE, P. D., HAWKSWORTH, D. L., 1997: Amplification of fungal rDNA-ITS regions from non-fertile specimens of the lichen-forming genus Parmelia. -Lichenologist 29: 275-282.
6. CUBERO, O. F., CRESPO, A., 1997: Genetic variability in populations of Physconia enteroxantha (NYL.) POELT. - In: IAL III Abstracts, p. 151. - Salzburg.
7. GARDES, M., BRUNS, T. D., 1993: ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhizae and rust. - Molec. Ecol. 2: 113-118.
8. GRUBE, M., DEPRIEST, P., GARGAS, A., HAFELLNER, J., 1995: DNA isolation from lichen ascomata. - Mycol. Res. 99: 1321-1324.
9. HÖSS, M., PÄÄBO, S., 1993: DNA extraction from Pleistocene bones by a silica-based purification method. - Nucl. Acids Res. 21: 3913-3914.
10. JONES, A. S., 1963: Use of alkyltrimethylammonium bromides for the isolation of ribo-and the deoxyribo-nucleic acids. - Nature 199: 280-282.
11. LEE, S. B., MILGROOM, M. G., TAYLOR, J. W., 1998: A rapid, high yield mini-prep method for isolation of total genomic DNA from fungi. - Fungal Genet. Newslett. 35: 23-24.
12. PÄÄBO, S., 1990: Amplifying ancient DNA. - In INNIS, M. A., GELFAND, D. H., SNINSKY, J. J., WHITE, T. J., (Eds): PCR protocols. - New York: Academic Press.
13. PATERSON, R. R. M., BRIDGE, P. D., 1994: Biochemical techniques for filamentous fungi. -Wallingford: CABI.
14. RAEDER, U., BRODA, P., 1985: Rapid preparation of DNA from filamentous fungi. - Lett. Appl. Microbiol. 1: 17-20.
15. ROGERS, S. O., BENDICH, A. J., 1994: Extraction of total cellular DNA from plants, algae and fungi. - Pl. Molec. Biol. Manual D1: 1-8.
16. REHNER, S., BLEDSOE, C., MUELLER, G. J., AMMIRATI, J. F., 1989: Extraction of DNA from basidiomycetes for ribosomal RNA hybridization. - Canad. J. Bot. 67: 1235-1243.
17. SAVOLAINEN, V., CUÉNOUD, P., SPICHIGER, R., MARTÍNEZ, M. D. P., CRÈVECOEUR, M., MANEN, J., 1995: The use of herbarium specimens for DNA phylogenetics; evaluation and improvement. - Pl. Syst. Evol. 197: 87-98.
18. SAMBROOK, J., FRITSCH, E. F., MANIATIS, T., 1989: Molecular cloning: a laboratory manual. 2nd edn. - New York: Cold Spring Harbor Laboratory Press.
19. TAYLOR, J. W., SWANN, E. C., 1994: DNA from herbarium specimens. - In HERRMAN, B., HUMMEL, S., (Eds): Ancient DNA. - Berlin, Heidelberg, New York: Springer.
20. WHITE, T. J., BRUNS, T. D., LEE, S., TAYLOR, J., 1990: Amplification and direct sequencing of fungal ribosomal DNA gens for phylogenetics. - In INNIS, M. A., GELFAND, D. H., SNINSKY, J. J., WHITE, T. J., (Eds): PCR protocols. - New York: Academic Press.