-
1
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. 2000. Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
2
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, Villen J, Shin C, Camargo FD, Gygi SP, Bartel DP. 2008. The impact of microRNAs on protein output. Nature 455: 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
3
-
-
0242266620
-
Dicer is essential for mouse development
-
Bernstein E, Kim SY, Carmell MA, Murchison EP, Alcorn H, Li MZ, Mills AA, Elledge SJ, Anderson KV, Hannon GJ. 2003. Dicer is essential for mouse development. Nat Genet 35: 215-217.
-
(2003)
Nat Genet
, vol.35
, pp. 215-217
-
-
Bernstein, E.1
Kim, S.Y.2
Carmell, M.A.3
Murchison, E.P.4
Alcorn, H.5
Li, M.Z.6
Mills, A.A.7
Elledge, S.J.8
Anderson, K.V.9
Hannon, G.J.10
-
4
-
-
36749013633
-
RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
-
Calabrese JM, Seila AC, Yeo GW, Sharp PA. 2007. RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. Proc Natl Acad Sci 104: 18097-18102.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 18097-18102
-
-
Calabrese, J.M.1
Seila, A.C.2
Yeo, G.W.3
Sharp, P.A.4
-
5
-
-
77953183812
-
A dicer-independent miRNA biogenesis pathway that requires Ago catalysis
-
Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ. 2010. A dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature 465: 584-589.
-
(2010)
Nature
, vol.465
, pp. 584-589
-
-
Cheloufi, S.1
Dos Santos, C.O.2
Chong, M.M.3
Hannon, G.J.4
-
6
-
-
23644433363
-
TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
-
Chendrimada TP, Gregory RI, Kumaraswamy E, Norman J, Cooch N, Nishikura K, Shiekhattar R. 2005. TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature 436: 740-744.
-
(2005)
Nature
, vol.436
, pp. 740-744
-
-
Chendrimada, T.P.1
Gregory, R.I.2
Kumaraswamy, E.3
Norman, J.4
Cooch, N.5
Nishikura, K.6
Shiekhattar, R.7
-
7
-
-
51049089025
-
The RNaseIII enzyme Drosha is critical in T cells for preventing lethal inflammatory disease
-
Chong MM, Rasmussen JP, Rudensky AY, Littman DR. 2008. The RNaseIII enzyme Drosha is critical in T cells for preventing lethal inflammatory disease. J Exp Med 205: 2005-2017.
-
(2008)
J Exp Med
, vol.205
, pp. 2005-2017
-
-
Chong, M.M.1
Rasmussen, J.P.2
Rudensky, A.Y.3
Littman, D.R.4
-
8
-
-
77953897182
-
A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity
-
Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, et al. 2010. A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity. Science 328: 1694-1698.
-
(2010)
Science
, vol.328
, pp. 1694-1698
-
-
Cifuentes, D.1
Xue, H.2
Taylor, D.W.3
Patnode, H.4
Mishima, Y.5
Cheloufi, S.6
Ma, E.7
Mane, S.8
Hannon, G.J.9
Lawson, N.D.10
-
9
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox J, Mann M. 2008. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26: 1367-1372.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
10
-
-
44449132518
-
Dicer loss in striatal neurons produces behavioral and neuroanatomical phenotypes in the absence of neurodegeneration
-
Cuellar TL, Davis TH, Nelson PT, Loeb GB, Harfe BD, Ullian E, McManus MT. 2008. Dicer loss in striatal neurons produces behavioral and neuroanatomical phenotypes in the absence of neurodegeneration. Proc Natl Acad Sci 105: 5614-5619.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 5614-5619
-
-
Cuellar, T.L.1
Davis, T.H.2
Nelson, P.T.3
Loeb, G.B.4
Harfe, B.D.5
Ullian, E.6
McManus, M.T.7
-
11
-
-
77951972792
-
Regulation of microRNA biogenesis: A miRiad of mechanisms
-
doi: 10.1186/1478-811X-7-18
-
Davis BN, Hata A. 2009. Regulation of microRNA biogenesis: A miRiad of mechanisms. Cell Commun Signal 7: 18. doi: 10.1186/1478-811X-7-18.
-
(2009)
Cell Commun Signal
, vol.7
, pp. 18
-
-
Davis, B.N.1
Hata, A.2
-
12
-
-
9144224451
-
Processing of primary microRNAs by the Microprocessor complex
-
Denli AM, Tops BB, Plasterk RH, Ketting RF, Hannon GJ. 2004. Processing of primary microRNAs by the Microprocessor complex. Nature 432: 231-235.
-
(2004)
Nature
, vol.432
, pp. 231-235
-
-
Denli, A.M.1
Tops, B.B.2
Plasterk, R.H.3
Ketting, R.F.4
Hannon, G.J.5
-
13
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N. 2008. Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight? Nat Rev Genet 9: 102-114.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
14
-
-
9144225636
-
The Microprocessor complex mediates the genesis of microRNAs
-
Gregory RI, Yan KP, Amuthan G, Chendrimada T, Doratotaj B, Cooch N, Shiekhattar R. 2004. The Microprocessor complex mediates the genesis of microRNAs. Nature 432: 235-240.
-
(2004)
Nature
, vol.432
, pp. 235-240
-
-
Gregory, R.I.1
Yan, K.P.2
Amuthan, G.3
Chendrimada, T.4
Doratotaj, B.5
Cooch, N.6
Shiekhattar, R.7
-
16
-
-
37349130959
-
Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing
-
Hafner M, Landgraf P, Ludwig J, Rice A, Ojo T, Lin C, Holoch D, Lim C, Tuschl T. 2008. Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing. Methods 44: 3-12.
-
(2008)
Methods
, vol.44
, pp. 3-12
-
-
Hafner, M.1
Landgraf, P.2
Ludwig, J.3
Rice, A.4
Ojo, T.5
Lin, C.6
Holoch, D.7
Lim, C.8
Tuschl, T.9
-
17
-
-
10644234841
-
The Drosha-DGCR8 complex in primary microRNA processing
-
Han J, Lee Y, Yeom KH, Kim YK, Jin H, Kim VN. 2004. The Drosha-DGCR8 complex in primary microRNA processing. Genes Dev 18: 3016-3027.
-
(2004)
Genes Dev
, vol.18
, pp. 3016-3027
-
-
Han, J.1
Lee, Y.2
Yeom, K.H.3
Kim, Y.K.4
Jin, H.5
Kim, V.N.6
-
18
-
-
33744520104
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex
-
Han J, Lee Y, Yeom KH, Nam JW, Heo I, Rhee JK, Sohn SY, Cho Y, Zhang BT, Kim VN. 2006. Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell 125: 887-901.
-
(2006)
Cell
, vol.125
, pp. 887-901
-
-
Han, J.1
Lee, Y.2
Yeom, K.H.3
Nam, J.W.4
Heo, I.5
Rhee, J.K.6
Sohn, S.Y.7
Cho, Y.8
Zhang, B.T.9
Kim, V.N.10
-
19
-
-
58149097010
-
Post-transcriptional crossregulation between Drosha and DGCR8
-
Han J, Pedersen JS, Kwon SC, Belair CD, Kim YK, Yeom KH, Yang WY, Haussler D, Blelloch R, Kim VN. 2009. Post-transcriptional crossregulation between Drosha and DGCR8. Cell 136: 75-84.
-
(2009)
Cell
, vol.136
, pp. 75-84
-
-
Han, J.1
Pedersen, J.S.2
Kwon, S.C.3
Belair, C.D.4
Kim, Y.K.5
Yeom, K.H.6
Yang, W.Y.7
Haussler, D.8
Blelloch, R.9
Kim, V.N.10
-
20
-
-
23344439006
-
The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb
-
Harfe BD, McManus MT, Mansfield JH, Hornstein E, Tabin CJ. 2005. The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb. Proc Natl Acad Sci 102: 10898-10903.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 10898-10903
-
-
Harfe, B.D.1
McManus, M.T.2
Mansfield, J.H.3
Hornstein, E.4
Tabin, C.J.5
-
21
-
-
62549120015
-
Genome-wide identification of targets of the drosha-pasha/DGCR8 complex
-
Kadener S, Rodriguez J, Abruzzi KC, Khodor YL, Sugino K, Marr MT II, Nelson S, Rosbash M. 2009. Genome-wide identification of targets of the drosha-pasha/DGCR8 complex. RNA 15: 537-545.
-
(2009)
RNA
, vol.15
, pp. 537-545
-
-
Kadener, S.1
Rodriguez, J.2
Abruzzi, K.C.3
Khodor, Y.L.4
Sugino, K.5
Marr II, M.T.6
Nelson, S.7
Rosbash, M.8
-
22
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, et al. 2005. Combinatorial microRNA target predictions. Nat Genet 37: 495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
MacMenamin, P.7
Da Piedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
-
23
-
-
42949179593
-
In vitro and in vivo assays for the activity of Drosha complex
-
Lee Y, Kim VN. 2007. In vitro and in vivo assays for the activity of Drosha complex. Methods Enzymol 427: 89-106.
-
(2007)
Methods Enzymol
, vol.427
, pp. 89-106
-
-
Lee, Y.1
Kim, V.N.2
-
24
-
-
18244365863
-
A critical role for Dnmt1 and DNA methylation in T cell development, function, and survival
-
Lee PP, Fitzpatrick DR, Beard C, Jessup HK, Lehar S, Makar KW, Perez-Melgosa M, Sweetser MT, Schlissel MS, Nguyen S, et al. 2001. A critical role for Dnmt1 and DNA methylation in T cell development, function, and survival. Immunity 15: 763-774.
-
(2001)
Immunity
, vol.15
, pp. 763-774
-
-
Lee, P.P.1
Fitzpatrick, D.R.2
Beard, C.3
Jessup, H.K.4
Lehar, S.5
Makar, K.W.6
Perez-Melgosa, M.7
Sweetser, M.T.8
Schlissel, M.S.9
Nguyen, S.10
-
25
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB. 2003. Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
26
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
27
-
-
0035949674
-
A computational analysis of sequence features involved in recognition of short introns
-
Lim LP, Burge CB. 2001. A computational analysis of sequence features involved in recognition of short introns. Proc Natl Acad Sci 98: 11193-11198.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 11193-11198
-
-
Lim, L.P.1
Burge, C.B.2
-
28
-
-
67650747402
-
DIANA-microT web server: Elucidating microRNA functions through target prediction
-
doi: 10.1093/nar/gkp292
-
Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, et al. 2009. DIANA-microT web server: Elucidating microRNA functions through target prediction. Nucleic Acids Res 37: W273-W276. doi: 10.1093/nar/gkp292.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Maragkakis, M.1
Reczko, M.2
Simossis, V.A.3
Alexiou, P.4
Papadopoulos, G.L.5
Dalamagas, T.6
Giannopoulos, G.7
Goumas, G.8
Koukis, E.9
Kourtis, K.10
-
29
-
-
24744441906
-
Characterization of Dicer-deficient murine embryonic stem cells
-
Murchison EP, Partridge JF, Tam OH, Cheloufi S, Hannon GJ. 2005. Characterization of Dicer-deficient murine embryonic stem cells. Proc Natl Acad Sci 102: 12135-12140.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 12135-12140
-
-
Murchison, E.P.1
Partridge, J.F.2
Tam, O.H.3
Cheloufi, S.4
Hannon, G.J.5
-
30
-
-
33947306584
-
Critical roles for Dicer in the female germline
-
Murchison EP, Stein P, Xuan Z, Pan H, Zhang MQ, Schultz RM, Hannon GJ. 2007. Critical roles for Dicer in the female germline. Genes Dev 21: 682-693.
-
(2007)
Genes Dev
, vol.21
, pp. 682-693
-
-
Murchison, E.P.1
Stein, P.2
Xuan, Z.3
Pan, H.4
Zhang, M.Q.5
Schultz, R.M.6
Hannon, G.J.7
-
31
-
-
34447107760
-
The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila
-
Okamura K, Hagen JW, Duan H, Tyler DM, Lai EC. 2007. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell 130: 89-100.
-
(2007)
Cell
, vol.130
, pp. 89-100
-
-
Okamura, K.1
Hagen, J.W.2
Duan, H.3
Tyler, D.M.4
Lai, E.C.5
-
32
-
-
34249810892
-
Argonaute proteins: Mediators of RNA silencing
-
Peters L, Meister G. 2007. Argonaute proteins: Mediators of RNA silencing. Mol Cell 26: 611-623.
-
(2007)
Mol Cell
, vol.26
, pp. 611-623
-
-
Peters, L.1
Meister, G.2
-
33
-
-
75549089967
-
The UCSC Genome Browser database: Update 2010
-
doi: 10.1093/nar/gkp939
-
Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, et al. 2010. The UCSC Genome Browser database: Update 2010. Nucleic Acids Res 38: D613-D619. doi: 10.1093/nar/gkp939.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Rhead, B.1
Karolchik, D.2
Kuhn, R.M.3
Hinrichs, A.S.4
Zweig, A.S.5
Fujita, P.A.6
Diekhans, M.7
Smith, K.E.8
Rosenbloom, K.R.9
Raney, B.J.10
-
34
-
-
34447097693
-
Intronic microRNA precursors that bypass Drosha processing
-
Ruby JG, Jan CH, Bartel DP. 2007. Intronic microRNA precursors that bypass Drosha processing. Nature 448: 83-86.
-
(2007)
Nature
, vol.448
, pp. 83-86
-
-
Ruby, J.G.1
Jan, C.H.2
Bartel, D.P.3
-
35
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N. 2008. Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
36
-
-
70349187028
-
Genomic analysis suggests that mRNA destabilization by the microprocessor is specialized for the auto-regulation of Dgcr8
-
doi: 10.1371/journal.pone.0006971
-
Shenoy A, Blelloch R. 2009. Genomic analysis suggests that mRNA destabilization by the microprocessor is specialized for the auto-regulation of Dgcr8. PLoS ONE 4: e6971. doi: 10.1371/journal.pone.0006971.
-
(2009)
PLoS ONE
, vol.4
-
-
Shenoy, A.1
Blelloch, R.2
-
37
-
-
39149086020
-
Induction of pluripotent stem cells from fibroblast cultures
-
Takahashi K, Okita K, Nakagawa M, Yamanaka S. 2007. Induction of pluripotent stem cells from fibroblast cultures. Nat Protoc 2: 3081-3089.
-
(2007)
Nat Protoc
, vol.2
, pp. 3081-3089
-
-
Takahashi, K.1
Okita, K.2
Nakagawa, M.3
Yamanaka, S.4
-
38
-
-
44349159416
-
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
-
Tam OH, Aravin AA, Stein P, Girard A, Murchison EP, Cheloufi S, Hodges E, Anger M, Sachidanandam R, Schultz RM, et al. 2008. Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature 453: 534-538.
-
(2008)
Nature
, vol.453
, pp. 534-538
-
-
Tam, O.H.1
Aravin, A.A.2
Stein, P.3
Girard, A.4
Murchison, E.P.5
Cheloufi, S.6
Hodges, E.7
Anger, M.8
Sachidanandam, R.9
Schultz, R.M.10
-
39
-
-
33947327049
-
Maternal microRNAs are essential for mouse zygotic development
-
Tang F, Kaneda M, O'Carroll D, Hajkova P, Barton SC, Sun YA, Lee C, Tarakhovsky A, Lao K, Surani MA. 2007. Maternal microRNAs are essential for mouse zygotic development. Genes Dev 21: 644-648.
-
(2007)
Genes Dev
, vol.21
, pp. 644-648
-
-
Tang, F.1
Kaneda, M.2
O'Carroll, D.3
Hajkova, P.4
Barton, S.C.5
Sun, Y.A.6
Lee, C.7
Tarakhovsky, A.8
Lao, K.9
Surani, M.A.10
-
40
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
Watanabe T, Totoki Y, Toyoda A, Kaneda M, Kuramochi-Miyagawa S, Obata Y, Chiba H, Kohara Y, Kono T, Nakano T, et al. 2008. Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453: 539-543.
-
(2008)
Nature
, vol.453
, pp. 539-543
-
-
Watanabe, T.1
Totoki, Y.2
Toyoda, A.3
Kaneda, M.4
Kuramochi-Miyagawa, S.5
Obata, Y.6
Chiba, H.7
Kohara, Y.8
Kono, T.9
Nakano, T.10
-
41
-
-
5844299536
-
Inactivation of Notch 1 in immature thymocytes does not perturb CD4 or CD8T cell development
-
Wolfer A, Bakker T, Wilson A, Nicolas M, Ioannidis V, Littman DR, Lee PP, Wilson CB, Held W, MacDonald HR, et al. 2001. Inactivation of Notch 1 in immature thymocytes does not perturb CD4 or CD8T cell development. Nat Immunol 2: 235-241.
-
(2001)
Nat Immunol
, vol.2
, pp. 235-241
-
-
Wolfer, A.1
Bakker, T.2
Wilson, A.3
Nicolas, M.4
Ioannidis, V.5
Littman, D.R.6
Lee, P.P.7
Wilson, C.B.8
Held, W.9
MacDonald, H.R.10
-
42
-
-
58149382072
-
Screening for EphB signaling effectors using SILAC with a linear ion trap-orbitrap mass spectrometer
-
Zhang G, Fenyo D, Neubert TA. 2008. Screening for EphB signaling effectors using SILAC with a linear ion trap-orbitrap mass spectrometer. J Proteome Res 7: 4715-4726.
-
(2008)
J Proteome Res
, vol.7
, pp. 4715-4726
-
-
Zhang, G.1
Fenyo, D.2
Neubert, T.A.3
-
43
-
-
0042121256
-
Mfold Web server for nucleic acid folding and hybridization prediction
-
Zuker M. 2003. Mfold Web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|