-
1
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte, C. and Pritham, E.J. (2007) DNA transposons and the evolution of eukaryotic genomes. Annu. Rev. Genet., 41, 331-368
-
(2007)
Annu. Rev. Genet
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
2
-
-
0029832550
-
IS 10/Tn 10 transposition efficiently accommodates diverse transposon end configurations
-
Chalmers, R.M. and Kleckner, N. (1996) IS10/Tn10 transposition efficiently accommodates diverse transposon end configurations. EMBO J., 15, 5112-5122. (Pubitemid 26315822
-
(1996)
EMBO Journal
, vol.15
, Issue.18
, pp. 5112-5122
-
-
Chalmers, R.M.1
Kleckner, N.2
-
3
-
-
0034616993
-
Three-dimensional structure of the tn5 synaptic complex transposition intermediate
-
DOI 10.1126/science.289.5476.77
-
Davies, D.R., Goryshin, I.Y., Reznikoff, W.S. and Rayment, I. (2000) Three-dimensional structure of the Tn5 synaptic complex transposition intermediate. Science, 289, 77-85. (Pubitemid 30463293
-
(2000)
Science
, vol.289
, Issue.5476
, pp. 77-85
-
-
Davies, D.R.1
Goryshin, I.Y.2
Reznikoff, W.S.3
Rayment, I.4
-
4
-
-
70149109999
-
Molecular architecture of the Mos1 paired-end complex: The structural basis of DNA transposition in a eukaryote
-
Richardson, J.M., Colloms, S.D., Finnegan, D.J. and Walkinshaw, M.D. (2009) Molecular architecture of the Mos1 paired-end complex: The structural basis of DNA transposition in a eukaryote. Cell, 138, 1096-1108
-
(2009)
Cell
, vol.138
, pp. 1096-1108
-
-
Richardson, J.M.1
Colloms, S.D.2
Finnegan, D.J.3
Walkinshaw, M.D.4
-
5
-
-
0024446065
-
Mutational analysis of IS10's outside end
-
Huisman, O., Errada, P.R., Signon, L. and Kleckner, N. (1989) Mutational analysis of IS10's outside end. EMBO J., 8, 2101-2109. (Pubitemid 19273539
-
(1989)
EMBO Journal
, vol.8
, Issue.7
, pp. 2101-2109
-
-
Huisman, O.1
Errada, P.R.2
Signon, L.3
Klecker, N.4
-
6
-
-
1542345458
-
DNA looping and catalysis; the IHF-folded arm of Tn10 promotes conformational changes and hairpin resolution
-
Crellin, P., Sewitz, S. and Chalmers, R. (2004) DNA looping and catalysis; the IHF-folded arm of Tn10 promotes conformational changes and hairpin resolution. Mol. Cell, 13, 537-547
-
(2004)
Mol. Cell
, vol.13
, pp. 537-547
-
-
Crellin, P.1
Sewitz, S.2
Chalmers, R.3
-
7
-
-
33751378365
-
Functional coupling between the two active sites during Tn 10 transposition buffers the mutation of sequences critical for DNA hairpin processing
-
Liu, D., Sewitz, S., Crellin, P. and Chalmers, R. (2006) Functional coupling between the two active sites during Tn 10 transposition buffers the mutation of sequences critical for DNA hairpin processing. Mol. Microbiol., 62, 1522-1533
-
(2006)
Mol. Microbiol
, vol.62
, pp. 1522-1533
-
-
Liu, D.1
Sewitz, S.2
Crellin, P.3
Chalmers, R.4
-
8
-
-
75649086128
-
Transposition of the human Hsmar1 transposon: Rate-limiting steps and the importance of the flanking TA dinucleotide in second strand cleavage
-
Claeys Bouuaert, C. and Chalmers, R. (2010) Transposition of the human Hsmar1 transposon: Rate-limiting steps and the importance of the flanking TA dinucleotide in second strand cleavage. Nucleic Acids Res., 38, 190-202
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 190-202
-
-
Claeys Bouuaert, C.1
Chalmers, R.2
-
9
-
-
0035168323
-
The dde motif in rag-1 is contributed in trans to a single active site that catalyzes the nicking and transesterification steps of v d
-
Swanson, P.C. (2001) The DDE motif in RAG-1 is contributed in trans to a single active site that catalyzes the nicking and transesterification steps of V(D)J recombination. Mol. Cell. Biol., 21, 449-458
-
(2001)
J Recombination. Mol. Cell. Biol
, vol.21
, pp. 449-458
-
-
Swanson, P.C.1
-
10
-
-
33645305136
-
Mechanism of Mos1 transposition: Insights from structural analysis
-
Richardson, J.M., Dawson, A., O'Hagan, N., Taylor, P., Finnegan, D.J. and Walkinshaw, M.D. (2006) Mechanism of Mos1 transposition: Insights from structural analysis. EMBO J., 25, 1324-1334
-
(2006)
EMBO J.
, vol.25
, pp. 1324-1334
-
-
Richardson, J.M.1
Dawson, A.2
O'Hagan, N.3
Taylor, P.4
Finnegan, D.J.5
Walkinshaw, M.D.6
-
11
-
-
0033782185
-
The nicking step in V D J recombination is independent of synapsis: Implications for the immune repertoire
-
Yu, K. and Lieber, M.R. (2000) The nicking step in V(D)J recombination is independent of synapsis: Implications for the immune repertoire. Mol. Cell. Biol., 20, 7914-7921
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 7914-7921
-
-
Yu, K.1
Lieber, M.R.2
-
12
-
-
34548797130
-
The beyond 12/23 restriction is imposed at the nicking and pairing steps of dna cleavage during v(d)j recombination
-
DOI 10.1128/MCB.00835-07
-
Drejer-Teel, A.H., Fugmann, S.D. and Schatz, D.G. (2007) The beyond 12/23 restriction is imposed at the nicking and pairing steps of DNA cleavage during V(D)J recombination. Mol. Cell. Biol., 27, 6288-6299. (Pubitemid 47435737
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.18
, pp. 6288-6299
-
-
Drejer-Teel, A.H.1
Fugmann, S.D.2
Schatz, D.G.3
-
13
-
-
70350545721
-
Base flipping in v d j recombination: Insights into the mechanism of hairpin formation, the 12/23 rule, and the coordination of double-strand breaks
-
Bischerour, J., Lu, C., Roth, D.B. and Chalmers, R. (2009) Base flipping in V(D)J recombination: Insights into the mechanism of hairpin formation, the 12/23 rule, and the coordination of double-strand breaks. Mol. Cell. Biol., 29, 5889-5899
-
(2009)
Mol. Cell. Biol
, vol.29
, pp. 5889-5899
-
-
Bischerour, J.1
Lu, C.2
Roth, D.B.3
Chalmers, R.4
-
14
-
-
78751563869
-
A simple topological filter in a eukaryotic transposon as a mechanism to suppress genome instability
-
Claeys Bouuaert, C., Liu, D. and Chalmers, R. (2011) A simple topological filter in a eukaryotic transposon as a mechanism to suppress genome instability. Mol. Cell. Biol., 31, 317-327
-
(2011)
Mol. Cell. Biol
, vol.31
, pp. 317-327
-
-
Claeys Bouuaert, C.1
Liu, D.2
Chalmers, R.3
-
15
-
-
84894229758
-
The autoregulation of a eukaryotic DNA transposon
-
Claeys Bouuaert, C., Lipkow, K., Andrews, S.S., Liu, D. and Chalmers, R. (2013) The autoregulation of a eukaryotic DNA transposon. Elife, 2, e00668
-
(2013)
Elife
, vol.2
-
-
Claeys Bouuaert, C.1
Lipkow, K.2
Andrews, S.S.3
Liu, D.4
Chalmers, R.5
-
16
-
-
78651319695
-
Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity
-
Chan, S.H., Stoddard, B.L. and Xu, S.Y. (2011) Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity. Nucleic Acids Res., 39, 1-18
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1-18
-
-
Chan, S.H.1
Stoddard, B.L.2
Xu, S.Y.3
-
17
-
-
77951977096
-
Gene therapy vectors: The prospects and potentials of the cut-And-paste transposons
-
Claeys Bouuaert, C. and Chalmers, R.M. (2010) Gene therapy vectors: The prospects and potentials of the cut-And-paste transposons. Genetica, 138, 473-484
-
(2010)
Genetica
, vol.138
, pp. 473-484
-
-
Claeys Bouuaert, C.1
Chalmers, R.M.2
-
18
-
-
0032475879
-
Tn10 transposition via a DNA hairpin intermediate
-
DOI 10.1016/S0092-8674(00)81788-2
-
Kennedy, A.K., Guhathakurta, A., Kleckner, N. and Haniford, D.B. (1998) Tn10 transposition via a DNA hairpin intermediate. Cell, 95, 125-134. (Pubitemid 28458030
-
(1998)
Cell
, vol.95
, Issue.1
, pp. 125-134
-
-
Kennedy, A.K.1
Guhathakurta, A.2
Kleckner, N.3
Haniford, D.B.4
-
19
-
-
0033601183
-
Hairpin formation in Tn5 transposition
-
Bhasin, A., Goryshin, I.Y. and Reznikoff, W.S. (1999) Hairpin formation in Tn5 transposition. J. Biol. Chem., 274, 37021-37029
-
(1999)
J. Biol. Chem
, vol.274
, pp. 37021-37029
-
-
Bhasin, A.1
Goryshin, I.Y.2
Reznikoff, W.S.3
-
20
-
-
11144245992
-
Transposition of hAT elements links transposable elements and V(D)J recombination
-
DOI 10.1038/nature03157
-
Zhou, L., Mitra, R., Atkinson, P.W., Hickman, A.B., Dyda, F. and Craig, N.L. (2004) Transposition of hAT elements links transposable elements and V(D)J recombination. Nature, 432, 995-1001. (Pubitemid 40052224
-
(2004)
Nature
, vol.432
, Issue.7020
, pp. 995-1001
-
-
Zhou, L.1
Mitra, R.2
Atkinson, P.W.3
Hickman, A.B.4
Dyda, F.5
Craig, N.L.6
-
21
-
-
41949108098
-
Piggybac can bypass dna synthesis during cut and paste transposition
-
DOI 10.1038/emboj.2008.41, PII EMBOJ200841
-
Mitra, R., Fain-Thornton, J. and Craig, N.L. (2008) piggyBac can bypass DNA synthesis during cut and paste transposition. EMBO J., 27, 1097-1109. (Pubitemid 351508151
-
(2008)
EMBO Journal
, vol.27
, Issue.7
, pp. 1097-1109
-
-
Mitra, R.1
Fain-Thornton, J.2
Craig, N.L.3
-
22
-
-
0037248592
-
Excision of the drosophila mariner transposon mos1: Comparison with bacterial transposition and v(d)j recombination
-
DOI 10.1016/S1097-2765(02)00798-0
-
Dawson, A. and Finnegan, D.J. (2003) Excision of the Drosophila mariner transposon mos1. Comparison with bacterial transposition and v(d)j recombination. Mol. Cell, 11, 225-235. (Pubitemid 36126603
-
(2003)
Molecular Cell
, vol.11
, Issue.1
, pp. 225-235
-
-
Dawson, A.1
Finnegan, D.J.2
-
23
-
-
33744497802
-
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
-
Cordaux, R., Udit, S., Batzer, M.A. and Feschotte, C. (2006) Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proc. Natl. Acad. Sci. U.S.A., 103, 8101-8106
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 8101-8106
-
-
Cordaux, R.1
Udit, S.2
Batzer, M.A.3
Feschotte, C.4
-
24
-
-
34250216420
-
The ancient mariner sails again: Transposition of the human hsmar1 element by a reconstructed transposase and activities of the setmar protein on transposon ends
-
Miskey, C., Papp, B., Mates, L., Sinzelle, L., Keller, H., Izsvak, Z. and Ivics, Z. (2007) The ancient mariner sails again: Transposition of the human Hsmar1 element by a reconstructed transposase and activities of the SETMAR protein on transposon ends. Mol. Cell. Biol., 27, 4589-4600
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 4589-4600
-
-
Miskey, C.1
Papp, B.2
Mates, L.3
Sinzelle, L.4
Keller, H.5
Izsvak, Z.6
Ivics, Z.7
-
25
-
-
79251597252
-
Transposase-Transposase interactions in MOS1 complexes: A biochemical approach
-
Carpentier, G., Jaillet, J., Pflieger, A., Adet, J., Renault, S. and Auge-Gouillou, C. (2011) Transposase-Transposase interactions in MOS1 complexes: A biochemical approach. J. Mol. Biol., 405, 892-908
-
(2011)
J. Mol. Biol
, vol.405
, pp. 892-908
-
-
Carpentier, G.1
Jaillet, J.2
Pflieger, A.3
Adet, J.4
Renault, S.5
Auge-Gouillou, C.6
-
26
-
-
84872360200
-
Hsmar1 transposition is sensitive to the topology of the transposon donor and the target
-
Claeys Bouuaert, C. and Chalmers, R. (2013) Hsmar1 transposition is sensitive to the topology of the transposon donor and the target. PLoS One, 8, e53690
-
(2013)
PLoS One
, vol.8
-
-
Claeys Bouuaert, C.1
Chalmers, R.2
-
27
-
-
77951978640
-
Bacterial genetic methods to explore the biology of mariner transposons
-
Lampe, D.J. (2010) Bacterial genetic methods to explore the biology of mariner transposons. Genetica, 138, 499-508
-
(2010)
Genetica
, vol.138
, pp. 499-508
-
-
Lampe, D.J.1
-
28
-
-
84895779016
-
Hyperactive mariner transposons are created by mutations that disrupt allosterism and increase the rate of transposon end synapsis
-
Liu, D. and Chalmers, R. (2014) Hyperactive mariner transposons are created by mutations that disrupt allosterism and increase the rate of transposon end synapsis. Nucleic Acids Res., 42, 2637-2645
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 2637-2645
-
-
Liu, D.1
Chalmers, R.2
-
29
-
-
33846627783
-
The human setmar protein preserves most of the activities of the ancestral hsmar1 transposase
-
Liu, D., Bischerour, J., Siddique, A., Buisine, N., Bigot, Y. and Chalmers, R. (2007) The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase. Mol. Cell. Biol., 27, 1125-1132
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 1125-1132
-
-
Liu, D.1
Bischerour, J.2
Siddique, A.3
Buisine, N.4
Bigot, Y.5
Chalmers, R.6
-
30
-
-
0029818461
-
A purified mariner transposase is sufficient to mediate transposition in vitro
-
Lampe, D.J., Churchill, M.E. and Robertson, H.M. (1996) A purified mariner transposase is sufficient to mediate transposition in vitro. EMBO J., 15, 5470-5479. (Pubitemid 26336228
-
(1996)
EMBO Journal
, vol.15
, Issue.19
, pp. 5470-5479
-
-
Lampe, D.J.1
Churchill, M.E.A.2
Robertson, H.M.3
-
31
-
-
4444295114
-
Early intermediates of mariner transposition: Catalysis without synapsis of the transposon ends suggests a novel architecture of the synaptic complex
-
Lipkow, K., Buisine, N., Lampe, D.J. and Chalmers, R. (2004) Early intermediates of mariner transposition: Catalysis without synapsis of the transposon ends suggests a novel architecture of the synaptic complex. Mol. Cell. Biol., 24, 8301-8311
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 8301-8311
-
-
Lipkow, K.1
Buisine, N.2
Lampe, D.J.3
Chalmers, R.4
-
32
-
-
0035444278
-
DNA-binding activity and subunit interaction of the mariner transposase
-
Zhang, L., Dawson, A. and Finnegan, D.J. (2001) DNA-binding activity and subunit interaction of the mariner transposase. Nucleic Acids Res., 29, 3566-3575. (Pubitemid 32898770
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.17
, pp. 3566-3575
-
-
Zhang, L.1
Dawson, A.2
Finnegan, D.J.3
-
33
-
-
0035091724
-
The wild-Type conformation of the Mos-1 inverted terminal repeats is suboptimal for transposition in bacteria
-
Auge-Gouillou, C., Hamelin, M.H., Demattei, M.V., Periquet, M. and Bigot, Y. (2001) The wild-Type conformation of the Mos-1 inverted terminal repeats is suboptimal for transposition in bacteria. Mol. Genet. Genomics, 265, 51-57
-
(2001)
Mol. Genet. Genomics
, vol.265
, pp. 51-57
-
-
Auge-Gouillou, C.1
Hamelin, M.H.2
Demattei, M.V.3
Periquet, M.4
Bigot, Y.5
-
34
-
-
0027184481
-
A general two-metal-ion mechanism for catalytic RNA
-
Steitz, T.A. and Steitz, J.A. (1993) A general two-metal-ion mechanism for catalytic RNA. Proc. Natl. Acad. Sci. U.S.A., 90, 6498-6502
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
35
-
-
21244451435
-
Crystal structures of rnase h bound to an rna/dna hybrid: Substrate specificity and metal-dependent catalysis
-
DOI 10.1016/j.cell.2005.04.024, PII S0092867405004046
-
Nowotny, M., Gaidamakov, S.A., Crouch, R.J. and Yang, W. (2005) Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis. Cell, 121, 1005-1016. (Pubitemid 40884393
-
(2005)
Cell
, vol.121
, Issue.7
, pp. 1005-1016
-
-
Nowotny, M.1
Gaidamakov, S.A.2
Crouch, R.J.3
Yang, W.4
-
36
-
-
35348978302
-
Structure of human rnase h1 complexed with an rna/dna hybrid: Insight into hiv reverse transcription
-
Nowotny, M., Gaidamakov, S.A., Ghirlando, R., Cerritelli, S.M., Crouch, R.J. and Yang, W. (2007) Structure of human RNase H1 complexed with an RNA/DNA hybrid: Insight into HIV reverse transcription. Mol. Cell, 28, 264-276
-
(2007)
Mol. Cell
, vol.28
, pp. 264-276
-
-
Nowotny, M.1
Gaidamakov, S.A.2
Ghirlando, R.3
Cerritelli, S.M.4
Crouch, R.J.5
Yang, W.6
|