-
1
-
-
77955233623
-
Transposases are the most abundant, most ubiquitous genes in nature
-
Aziz RK, Breitbart M, Edwards RA, (2010) Transposases are the most abundant, most ubiquitous genes in nature. Nucleic Acids Res 38: 4207-4217.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4207-4217
-
-
Aziz, R.K.1
Breitbart, M.2
Edwards, R.A.3
-
2
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham EJ, (2007) DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41: 331-368.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
3
-
-
0003377345
-
Insertion Sequences and Transposons
-
In: Charlebois RL, editor, Washington, D.C.: American Society for Microbiology
-
Chalmers R, Blot M (1999) Insertion Sequences and Transposons. In: Charlebois RL, editor. Organization of the Prokaryotic Genome. Washington, D.C.: American Society for Microbiology. 151-169.
-
(1999)
Organization of the Prokaryotic Genome
, pp. 151-169
-
-
Chalmers, R.1
Blot, M.2
-
4
-
-
77951978386
-
Delivering the goods: viral and non-viral gene therapy systems and the inherent limits on cargo DNA and internal sequences
-
Atkinson H, Chalmers R, (2010) Delivering the goods: viral and non-viral gene therapy systems and the inherent limits on cargo DNA and internal sequences. Genetica 135: 485-489.
-
(2010)
Genetica
, vol.135
, pp. 485-489
-
-
Atkinson, H.1
Chalmers, R.2
-
5
-
-
77951977096
-
Gene therapy vectors: the prospects and potentials of the cut-and-paste transposons
-
Claeys Bouuaert C, Chalmers RM, (2010) Gene therapy vectors: the prospects and potentials of the cut-and-paste transposons. Genetica 138: 473-484.
-
(2010)
Genetica
, vol.138
, pp. 473-484
-
-
Claeys Bouuaert, C.1
Chalmers, R.M.2
-
6
-
-
80052996913
-
Nonviral gene delivery with the sleeping beauty transposon system
-
Ivics Z, Izsvak Z, (2011) Nonviral gene delivery with the sleeping beauty transposon system. Hum Gene Ther 22: 1043-1051.
-
(2011)
Hum Gene Ther
, vol.22
, pp. 1043-1051
-
-
Ivics, Z.1
Izsvak, Z.2
-
7
-
-
78751563869
-
A simple topological filter in a eukaryotic transposon as a mechanism to suppress genome instability
-
Claeys Bouuaert C, Liu D, Chalmers R, (2011) A simple topological filter in a eukaryotic transposon as a mechanism to suppress genome instability. Mol Cell Biol 31: 317-327.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 317-327
-
-
Claeys Bouuaert, C.1
Liu, D.2
Chalmers, R.3
-
8
-
-
0029818461
-
A purified mariner transposase is sufficient to mediate transposition in vitro
-
Lampe DJ, Churchill MEA, Robertson HM, (1996) A purified mariner transposase is sufficient to mediate transposition in vitro. EMBO J 15: 5470-5479.
-
(1996)
EMBO J
, vol.15
, pp. 5470-5479
-
-
Lampe, D.J.1
Churchill, M.E.A.2
Robertson, H.M.3
-
9
-
-
0033179759
-
Resident aliens: the Tc1/mariner superfamily of transposable elements
-
Plasterk RH, Izsvak Z, Ivics Z, (1999) Resident aliens: the Tc1/mariner superfamily of transposable elements. Trends Genet 15: 326-332.
-
(1999)
Trends Genet
, vol.15
, pp. 326-332
-
-
Plasterk, R.H.1
Izsvak, Z.2
Ivics, Z.3
-
10
-
-
0028275079
-
Target site choice of the related transposable elements Tc1 and Tc3 of Caenorhabditis elegans
-
van Luenen HG, Plasterk RH, (1994) Target site choice of the related transposable elements Tc1 and Tc3 of Caenorhabditis elegans. Nucleic Acids Res 22: 262-269.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 262-269
-
-
van Luenen, H.G.1
Plasterk, R.H.2
-
11
-
-
0036404918
-
Common physical properties of DNA affecting target site selection of sleeping beauty and other Tc1/mariner transposable elements
-
Vigdal TJ, Kaufman CD, Izsvak Z, Voytas DF, Ivics Z, (2002) Common physical properties of DNA affecting target site selection of sleeping beauty and other Tc1/mariner transposable elements. J Mol Biol 323: 441-452.
-
(2002)
J Mol Biol
, vol.323
, pp. 441-452
-
-
Vigdal, T.J.1
Kaufman, C.D.2
Izsvak, Z.3
Voytas, D.F.4
Ivics, Z.5
-
12
-
-
34250216420
-
The ancient mariner sails again: transposition of the human Hsmar1 element by a reconstructed transposase and activities of the SETMAR protein on transposon ends
-
Miskey C, Papp B, Mates L, Sinzelle L, Keller H, et al. (2007) The ancient mariner sails again: transposition of the human Hsmar1 element by a reconstructed transposase and activities of the SETMAR protein on transposon ends. Mol Cell Biol 27: 4589-4600.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 4589-4600
-
-
Miskey, C.1
Papp, B.2
Mates, L.3
Sinzelle, L.4
Keller, H.5
-
13
-
-
0031833703
-
Factors affecting transposition of the Himar1 mariner transposon in vitro
-
Lampe DJ, Grant TE, Robertson HM, (1998) Factors affecting transposition of the Himar1 mariner transposon in vitro. Genetics 149: 179-187.
-
(1998)
Genetics
, vol.149
, pp. 179-187
-
-
Lampe, D.J.1
Grant, T.E.2
Robertson, H.M.3
-
14
-
-
77951976775
-
Target site selection by the mariner-like element, Mos1
-
Crenes G, Moundras C, Demattei MV, Bigot Y, Petit A, et al. (2010) Target site selection by the mariner-like element, Mos1. Genetica 138: 509-517.
-
(2010)
Genetica
, vol.138
, pp. 509-517
-
-
Crenes, G.1
Moundras, C.2
Demattei, M.V.3
Bigot, Y.4
Petit, A.5
-
15
-
-
0030860886
-
Target choice determinants of the Tc1 transposon of Caenorhabditis elegans
-
Ketting RF, Fischer SE, Plasterk RH, (1997) Target choice determinants of the Tc1 transposon of Caenorhabditis elegans. Nucleic Acids Res 25: 4041-4047.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4041-4047
-
-
Ketting, R.F.1
Fischer, S.E.2
Plasterk, R.H.3
-
16
-
-
19944431736
-
Target-site preferences of Sleeping Beauty transposons
-
Liu G, Geurts AM, Yae K, Srinivasan AR, Fahrenkrug SC, et al. (2005) Target-site preferences of Sleeping Beauty transposons. J Mol Biol 346: 161-173.
-
(2005)
J Mol Biol
, vol.346
, pp. 161-173
-
-
Liu, G.1
Geurts, A.M.2
Yae, K.3
Srinivasan, A.R.4
Fahrenkrug, S.C.5
-
17
-
-
61349170146
-
The bacterial Tn9 chloramphenicol resistance gene: an attractive DNA segment for Mos1 mariner insertions
-
Crenes G, Ivo D, Herisson J, Dion S, Renault S, et al. (2009) The bacterial Tn9 chloramphenicol resistance gene: an attractive DNA segment for Mos1 mariner insertions. Mol Genet Genomics 281: 315-328.
-
(2009)
Mol Genet Genomics
, vol.281
, pp. 315-328
-
-
Crenes, G.1
Ivo, D.2
Herisson, J.3
Dion, S.4
Renault, S.5
-
18
-
-
33744827138
-
Structure-based prediction of insertion-site preferences of transposons into chromosomes
-
Geurts AM, Hackett CS, Bell JB, Bergemann TL, Collier LS, et al. (2006) Structure-based prediction of insertion-site preferences of transposons into chromosomes. Nucleic Acids Res 34: 2803-2811.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2803-2811
-
-
Geurts, A.M.1
Hackett, C.S.2
Bell, J.B.3
Bergemann, T.L.4
Collier, L.S.5
-
19
-
-
0023102545
-
Restriction of P-element insertions at the Notch locus of Drosophila melanogaster
-
Kelley MR, Kidd S, Berg RL, Young MW, (1987) Restriction of P-element insertions at the Notch locus of Drosophila melanogaster. Mol Cell Biol 7: 1545-1548.
-
(1987)
Mol Cell Biol
, vol.7
, pp. 1545-1548
-
-
Kelley, M.R.1
Kidd, S.2
Berg, R.L.3
Young, M.W.4
-
20
-
-
0024652297
-
Transcriptional occlusion of transposon targets
-
Casadesus J, Roth J, (1989) Transcriptional occlusion of transposon targets. Mol Gen Genet 216: 204-209.
-
(1989)
Mol Gen Genet
, vol.216
, pp. 204-209
-
-
Casadesus, J.1
Roth, J.2
-
21
-
-
78650675586
-
DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo
-
Gangadharan S, Mularoni L, Fain-Thornton J, Wheelan SJ, Craig NL, (2010) DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo. Proc Natl Acad Sci U S A 107: 21966-21972.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 21966-21972
-
-
Gangadharan, S.1
Mularoni, L.2
Fain-Thornton, J.3
Wheelan, S.J.4
Craig, N.L.5
-
22
-
-
75649099781
-
High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe
-
Guo Y, Levin HL, (2010) High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe. Genome Res 20: 239-248.
-
(2010)
Genome Res
, vol.20
, pp. 239-248
-
-
Guo, Y.1
Levin, H.L.2
-
23
-
-
84859556934
-
Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots
-
Mularoni L, Zhou Y, Bowen T, Gangadharan S, Wheelan SJ, et al. (2012) Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots. Genome Res 22: 693-703.
-
(2012)
Genome Res
, vol.22
, pp. 693-703
-
-
Mularoni, L.1
Zhou, Y.2
Bowen, T.3
Gangadharan, S.4
Wheelan, S.J.5
-
24
-
-
0345700688
-
Patterns of Hermes transposition in Drosophila melanogaster
-
Guimond N, Bideshi DK, Pinkerton AC, Atkinson PW, O'Brochta DA, (2003) Patterns of Hermes transposition in Drosophila melanogaster. Mol Genet Genomics 268: 779-790.
-
(2003)
Mol Genet Genomics
, vol.268
, pp. 779-790
-
-
Guimond, N.1
Bideshi, D.K.2
Pinkerton, A.C.3
Atkinson, P.W.4
O'Brochta, D.A.5
-
25
-
-
58149378340
-
Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish
-
Urasaki A, Asakawa K, Kawakami K, (2008) Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish. Proc Natl Acad Sci U S A 105: 19827-19832.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 19827-19832
-
-
Urasaki, A.1
Asakawa, K.2
Kawakami, K.3
-
26
-
-
70349176337
-
Chromosomal mobilization and reintegration of Sleeping Beauty and PiggyBac transposons
-
Liang Q, Kong J, Stalker J, Bradley A, (2009) Chromosomal mobilization and reintegration of Sleeping Beauty and PiggyBac transposons. Genesis 47: 404-408.
-
(2009)
Genesis
, vol.47
, pp. 404-408
-
-
Liang, Q.1
Kong, J.2
Stalker, J.3
Bradley, A.4
-
27
-
-
34147105638
-
The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage
-
Pace JK, 2nd, Feschotte C (2007) The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. Genome Res 17: 422-432.
-
(2007)
Genome Res
, vol.17
, pp. 422-432
-
-
Pace 2nd, J.K.1
Feschotte, C.2
-
28
-
-
0031593204
-
Molecular evolution of an ancient mariner transposon, Hsmar1, in the human genome
-
Robertson HM, Zumpano KL, (1997) Molecular evolution of an ancient mariner transposon, Hsmar1, in the human genome. Gene 205: 203-217.
-
(1997)
Gene
, vol.205
, pp. 203-217
-
-
Robertson, H.M.1
Zumpano, K.L.2
-
29
-
-
33744497802
-
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
-
Cordaux R, Udit S, Batzer MA, Feschotte C, (2006) Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proc Natl Acad Sci U S A 103: 8101-8106.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 8101-8106
-
-
Cordaux, R.1
Udit, S.2
Batzer, M.A.3
Feschotte, C.4
-
30
-
-
77951974621
-
Metnase/SETMAR: a domesticated primate transposase that enhances DNA repair, replication, and decatenation
-
Shaheen M, Williamson E, Nickoloff J, Lee SH, Hromas R, (2010) Metnase/SETMAR: a domesticated primate transposase that enhances DNA repair, replication, and decatenation. Genetica 138: 559-566.
-
(2010)
Genetica
, vol.138
, pp. 559-566
-
-
Shaheen, M.1
Williamson, E.2
Nickoloff, J.3
Lee, S.H.4
Hromas, R.5
-
31
-
-
33846627783
-
The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase
-
Liu D, Bischerour J, Siddique A, Buisine N, Bigot Y, et al. (2007) The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase. Mol Cell Biol 27: 1125-1132.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 1125-1132
-
-
Liu, D.1
Bischerour, J.2
Siddique, A.3
Buisine, N.4
Bigot, Y.5
-
32
-
-
75649086128
-
Transposition of the human Hsmar1 transposon: rate-limiting steps and the importance of the flanking TA dinucleotide in second strand cleavage
-
Claeys Bouuaert C, Chalmers R, (2010) Transposition of the human Hsmar1 transposon: rate-limiting steps and the importance of the flanking TA dinucleotide in second strand cleavage. Nucleic Acids Res 38: 190-202.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 190-202
-
-
Claeys Bouuaert, C.1
Chalmers, R.2
-
33
-
-
49249126751
-
Dissection of reverse gyrase activities: insight into the evolution of a thermostable molecular machine
-
Valenti A, Perugino G, D'Amaro A, Cacace A, Napoli A, et al. (2008) Dissection of reverse gyrase activities: insight into the evolution of a thermostable molecular machine. Nucleic Acids Res 36: 4587-4597.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4587-4597
-
-
Valenti, A.1
Perugino, G.2
D'Amaro, A.3
Cacace, A.4
Napoli, A.5
-
34
-
-
80055097284
-
H-NS mediates the dissociation of a refractory protein-DNA complex during Tn10/IS10 transposition
-
Liu D, Haniford DB, Chalmers RM, (2011) H-NS mediates the dissociation of a refractory protein-DNA complex during Tn10/IS10 transposition. Nucleic Acids Res 39: 6660-6668.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6660-6668
-
-
Liu, D.1
Haniford, D.B.2
Chalmers, R.M.3
-
35
-
-
84872286117
-
New human mariner transposase and nucleic acid sequence encoding the human mariner transposase, useful for gene tagging, gene discovery, in vitro mobilization of a gene, or for gene therapy
-
Miskey C, Ivics Z (2006) New human mariner transposase and nucleic acid sequence encoding the human mariner transposase, useful for gene tagging, gene discovery, in vitro mobilization of a gene, or for gene therapy. Delbrueck Cent Molekulare Medizin Max.
-
(2006)
Delbrueck Cent Molekulare Medizin Max
-
-
Miskey, C.1
Ivics, Z.2
-
36
-
-
79953124784
-
Structural insights into the retroviral DNA integration apparatus
-
Cherepanov P, Maertens GN, Hare S, (2011) Structural insights into the retroviral DNA integration apparatus. Curr Opin Struct Biol 21: 249-256.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 249-256
-
-
Cherepanov, P.1
Maertens, G.N.2
Hare, S.3
-
37
-
-
79958040710
-
Moving DNA around: DNA transposition and retroviral integration
-
Montano SP, Rice PA, (2011) Moving DNA around: DNA transposition and retroviral integration. Curr Opin Struct Biol 21: 370-378.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 370-378
-
-
Montano, S.P.1
Rice, P.A.2
-
38
-
-
78149434355
-
The mechanism of retroviral integration from X-ray structures of its key intermediates
-
Maertens GN, Hare S, Cherepanov P, (2010) The mechanism of retroviral integration from X-ray structures of its key intermediates. Nature 468: 326-329.
-
(2010)
Nature
, vol.468
, pp. 326-329
-
-
Maertens, G.N.1
Hare, S.2
Cherepanov, P.3
-
39
-
-
84869090034
-
The Mu transpososome structure sheds light on DDE recombinase evolution
-
Montano SP, Pigli YZ, Rice PA, (2012) The Mu transpososome structure sheds light on DDE recombinase evolution. Nature 491: 413-417.
-
(2012)
Nature
, vol.491
, pp. 413-417
-
-
Montano, S.P.1
Pigli, Y.Z.2
Rice, P.A.3
-
40
-
-
0038122833
-
Target DNA bending is an important specificity determinant in target site selection in Tn10 transposition
-
Pribil PA, Haniford DB, (2003) Target DNA bending is an important specificity determinant in target site selection in Tn10 transposition. J Mol Biol 330: 247-259.
-
(2003)
J Mol Biol
, vol.330
, pp. 247-259
-
-
Pribil, P.A.1
Haniford, D.B.2
-
41
-
-
70149109999
-
Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote
-
Richardson JM, Colloms SD, Finnegan DJ, Walkinshaw MD, (2009) Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote. Cell 138: 1096-1108.
-
(2009)
Cell
, vol.138
, pp. 1096-1108
-
-
Richardson, J.M.1
Colloms, S.D.2
Finnegan, D.J.3
Walkinshaw, M.D.4
-
42
-
-
0028067639
-
DNA bending creates favored sites for retroviral integration: an explanation for preferred insertion sites in nucleosomes
-
Muller HP, Varmus HE, (1994) DNA bending creates favored sites for retroviral integration: an explanation for preferred insertion sites in nucleosomes. EMBO J 13: 4704-4714.
-
(1994)
EMBO J
, vol.13
, pp. 4704-4714
-
-
Muller, H.P.1
Varmus, H.E.2
-
43
-
-
0031957859
-
A topological approach to nucleosome structure and dynamics: the linking number paradox and other issues
-
Prunell A, (1998) A topological approach to nucleosome structure and dynamics: the linking number paradox and other issues. Biophys J 74: 2531-2544.
-
(1998)
Biophys J
, vol.74
, pp. 2531-2544
-
-
Prunell, A.1
-
44
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks GE, Hon G, Chandonia JM, Brenner SE, (2004) WebLogo: a sequence logo generator. Genome Res 14: 1188-1190.
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
|