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Volumn 196, Issue 4, 2014, Pages 937-949

Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; DNA; MOLECULAR MARKER;

EID: 84901301450     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.113.159970     Document Type: Article
Times cited : (9)

References (64)
  • 1
    • 67650754965 scopus 로고    scopus 로고
    • A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes
    • Aggarwal, R., T. R. Benatti, N. Gill, C. Zhao, M. S. Chen et al., 2009 A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes. BMC Genomics 10: 293.
    • (2009) BMC Genomics , vol.10 , pp. 293
    • Aggarwal, R.1    Benatti, T.R.2    Gill, N.3    Zhao, C.4    Chen, M.S.5
  • 2
    • 30044435245 scopus 로고    scopus 로고
    • The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage largeinsert BAC libraries that represent the 10 genome types of the genus Oryza
    • Ammiraju, J. S., M. Luo, J. L. Goicoechea, W. Wang, D. Kudrna et al., 2006 The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage largeinsert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res. 16: 140-147.
    • (2006) Genome Res. , vol.16 , pp. 140-147
    • Ammiraju, J.S.1    Luo, M.2    Goicoechea, J.L.3    Wang, W.4    Kudrna, D.5
  • 3
    • 62549137865 scopus 로고    scopus 로고
    • Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set
    • Ammiraju, J. S. S., F. Lu, A. Sanyal, Y. Yu, X. Song et al., 2008 Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. Plant Cell 20: 3191-3209.
    • (2008) Plant Cell , vol.20 , pp. 3191-3209
    • Ammiraju, J.S.S.1    Lu, F.2    Sanyal, A.3    Yu, Y.4    Song, X.5
  • 4
    • 77954893229 scopus 로고    scopus 로고
    • Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza
    • Ammiraju, J. S., C. Fan, Y. Yu, X. Song, K. A. Cranston et al., 2010a Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. Plant J. 63: 430-442.
    • (2010) Plant J. , vol.63 , pp. 430-442
    • Ammiraju, J.S.1    Fan, C.2    Yu, Y.3    Song, X.4    Cranston, K.A.5
  • 5
    • 78751521261 scopus 로고    scopus 로고
    • The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives
    • Ammiraju, J. S., X. Song, M. Luo, N. Sisneros, A. Angelova et al., 2010b The Oryza BAC resource: a genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives. Breed. Sci. 60: 536-543.
    • (2010) Breed. Sci. , vol.60 , pp. 536-543
    • Ammiraju, J.S.1    Song, X.2    Luo, M.3    Sisneros, N.4    Angelova, A.5
  • 6
    • 84898027865 scopus 로고    scopus 로고
    • Detection and correction of assembly errors of rice Nipponbare reference sequence
    • DOI: 10.1111/plb.12090
    • Deng, Y., Y. Pan, and M. Luo, 2013 Detection and correction of assembly errors of rice Nipponbare reference sequence. Plant Biol. DOI: 10.1111/plb.12090
    • (2013) Plant Biol.
    • Deng, Y.1    Pan, Y.2    Luo, M.3
  • 8
    • 33645409862 scopus 로고    scopus 로고
    • GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
    • Fan, C., Y. Xing, H. Mao, T. Lu, B. Han et al., 2006 GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor. Appl. Genet. 112: 1164-1171.
    • (2006) Theor. Appl. Genet. , vol.112 , pp. 1164-1171
    • Fan, C.1    Xing, Y.2    Mao, H.3    Lu, T.4    Han, B.5
  • 9
    • 4644353880 scopus 로고    scopus 로고
    • An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments
    • Feltus, F. A., J. Wan, S. R. Schulze, J. C. Estill, N. Jiang et al., 2004 An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Res. 14: 1812-1819.
    • (2004) Genome Res. , vol.14 , pp. 1812-1819
    • Feltus, F.A.1    Wan, J.2    Schulze, S.R.3    Estill, J.C.4    Jiang, N.5
  • 10
    • 70449678714 scopus 로고    scopus 로고
    • Analysis of collinear regions of Oryza AA and CC genomes
    • Feng, Q., T. Huang, Q. Zhao, J. Zhu, Z. Lin et al., 2009 Analysis of collinear regions of Oryza AA and CC genomes. J. Genet. Genomics 36: 667-677.
    • (2009) J. Genet. Genomics , vol.36 , pp. 667-677
    • Feng, Q.1    Huang, T.2    Zhao, Q.3    Zhu, J.4    Lin, Z.5
  • 11
    • 84883340052 scopus 로고    scopus 로고
    • Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences
    • Gao, Z. Y., S. C. Zhao, W. M. He, L. B. Guo, Y. L. Peng et al., 2013 Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences. Proc. Natl. Acad. Sci. USA 110: 14492-14497.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 14492-14497
    • Gao, Z.Y.1    Zhao, S.C.2    He, W.M.3    Guo, L.B.4    Peng, Y.L.5
  • 12
  • 13
  • 14
    • 0037394626 scopus 로고    scopus 로고
    • Genome-wide intraspecific DNA-sequence variations in rice
    • Han, B., and Y. Xue, 2003 Genome-wide intraspecific DNA-sequence variations in rice. Curr. Opin. Plant Biol. 6: 134-138.
    • (2003) Curr. Opin. Plant Biol. , vol.6 , pp. 134-138
    • Han, B.1    Xue, Y.2
  • 15
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang, X., and A. Madan, 1999 CAP3: a DNA sequence assembly program. Genome Res. 9: 868-877.
    • (1999) Genome Res. , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 16
    • 78049332150 scopus 로고    scopus 로고
    • Genomewide association studies of 14 agronomic traits in rice landraces
    • Huang, X., X. Wei, T. Sang, Q. Zhao, Q. Feng et al., 2010 Genomewide association studies of 14 agronomic traits in rice landraces. Nat. Genet. 42: 961-967.
    • (2010) Nat. Genet. , vol.42 , pp. 961-967
    • Huang, X.1    Wei, X.2    Sang, T.3    Zhao, Q.4    Feng, Q.5
  • 17
    • 55549123888 scopus 로고    scopus 로고
    • Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice
    • Huang, X. H., G. J. Lu, Q. Zhao, X. H. Liu, and B. Han, 2008 Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice. Plant Physiol. 148: 25-40.
    • (2008) Plant Physiol. , vol.148 , pp. 25-40
    • Huang, X.H.1    Lu, G.J.2    Zhao, Q.3    Liu, X.H.4    Han, B.5
  • 18
    • 84867875610 scopus 로고    scopus 로고
    • A map of rice genome variation reveals the origin of cultivated rice
    • Huang, X. H., N. Kurata, X. H. Wei, Z. X. Wang, A. Wang et al., 2012 A map of rice genome variation reveals the origin of cultivated rice. Nature 490: 497-501.
    • (2012) Nature , vol.490 , pp. 497-501
    • Huang, X.H.1    Kurata, N.2    Wei, X.H.3    Wang, Z.X.4    Wang, A.5
  • 19
    • 77956828564 scopus 로고    scopus 로고
    • Rice structural variation: A comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza
    • Hurwitz, B. L., D. Kudrna, Y. Yu, A. Sebastian, A. Zuccolo et al., 2010 Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza. Plant J. 63: 990-1003.
    • (2010) Plant J. , vol.63 , pp. 990-1003
    • Hurwitz, B.L.1    Kudrna, D.2    Yu, Y.3    Sebastian, A.4    Zuccolo, A.5
  • 20
    • 84907150192 scopus 로고    scopus 로고
    • The mapbased sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project, 2005 The mapbased sequence of the rice genome. Nature 436: 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 21
    • 84878547485 scopus 로고    scopus 로고
    • The International Oryza Map Alignment Project: Development of a genus-wide comparative genomics platform to help solve the 9 billion-people question
    • Jacquemin, J., D. Bhatia, K. Singh, and R. A. Wing, 2013 The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Curr. Opin. Plant Biol. 16: 147-156.
    • (2013) Curr. Opin. Plant Biol. , vol.16 , pp. 147-156
    • Jacquemin, J.1    Bhatia, D.2    Singh, K.3    Wing, R.A.4
  • 22
    • 55049123655 scopus 로고    scopus 로고
    • Genetic control of rice plant architecture under domestication
    • Jin, J., W. Huang, J.-P. Gao, J. Yang, M. Shi et al., 2008 Genetic control of rice plant architecture under domestication. Nat. Genet. 40: 1365-1369.
    • (2008) Nat. Genet. , vol.40 , pp. 1365-1369
    • Jin, J.1    Huang, W.2    Gao, J.-P.3    Yang, J.4    Shi, M.5
  • 24
    • 84885960825 scopus 로고    scopus 로고
    • Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
    • Kawahara, Y., M. de la Bastide, J. P. Hamilton, H. Kanamori, W. R. McCombie et al., 2013 Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice 6: 1-10.
    • (2013) Rice , vol.6 , pp. 1-10
    • Kawahara, Y.1    de la Bastide, M.2    Hamilton, J.P.3    Kanamori, H.4    McCombie, W.R.5
  • 25
    • 43049143055 scopus 로고    scopus 로고
    • Mapping and sequencing of structural variation from eight human genomes
    • Kidd, J. M., G. M. Cooper, W. F. Donahue, H. S. Hayden, N. Sampas et al., 2008 Mapping and sequencing of structural variation from eight human genomes. Nature 453: 56-64.
    • (2008) Nature , vol.453 , pp. 56-64
    • Kidd, J.M.1    Cooper, G.M.2    Donahue, W.F.3    Hayden, H.S.4    Sampas, N.5
  • 26
    • 34548588693 scopus 로고    scopus 로고
    • Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type)
    • Kim, H., P. San Miguel, W. Nelson, K. Collura, M. Wissotski et al., 2007 Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics 176: 379-390.
    • (2007) Genetics , vol.176 , pp. 379-390
    • Kim, H.1    San Miguel, P.2    Nelson, W.3    Collura, K.4    Wissotski, M.5
  • 27
    • 43549125262 scopus 로고    scopus 로고
    • Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
    • Kim, H., B. Hurwitz, Y. Yu, K. Collura, N. Gill et al., 2008 Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biol. 9: R45.
    • (2008) Genome Biol. , vol.9
    • Kim, H.1    Hurwitz, B.2    Yu, Y.3    Collura, K.4    Gill, N.5
  • 28
    • 34547852208 scopus 로고    scopus 로고
    • SciRoKo: A new tool for whole genome microsatellite search and investigation
    • Kofler, R., C. Schlotterer, and T. Lelley, 2007 SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics 23: 1683-1685.
    • (2007) Bioinformatics , vol.23 , pp. 1683-1685
    • Kofler, R.1    Schlotterer, C.2    Lelley, T.3
  • 29
    • 33744830059 scopus 로고    scopus 로고
    • An SNP caused loss of seed shattering during rice domestication
    • Konishi, S., T. Izawa, S. Y. Lin, K. Ebana, Y. Fukuta et al., 2006 An SNP caused loss of seed shattering during rice domestication. Science 312: 1392-1396.
    • (2006) Science , vol.312 , pp. 1392-1396
    • Konishi, S.1    Izawa, T.2    Lin, S.Y.3    Ebana, K.4    Fukuta, Y.5
  • 30
    • 35748969870 scopus 로고    scopus 로고
    • New insights into the history of rice domestication
    • Kovach, M. J., M. T. Sweeney, and S. R. McCouch, 2007 New insights into the history of rice domestication. Trends Genet. 23: 578-587.
    • (2007) Trends Genet. , vol.23 , pp. 578-587
    • Kovach, M.J.1    Sweeney, M.T.2    McCouch, S.R.3
  • 31
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., and S. L. Salzberg, 2012 Fast gapped-read alignment with Bowtie 2. Nat. Methods 9: 357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 32
    • 33645469056 scopus 로고    scopus 로고
    • Rice domestication by reducing shattering
    • Li, C., A. Zhou, and T. Sang, 2006 Rice domestication by reducing shattering. Science 311: 1936-1939.
    • (2006) Science , vol.311 , pp. 1936-1939
    • Li, C.1    Zhou, A.2    Sang, T.3
  • 33
    • 0033929144 scopus 로고    scopus 로고
    • Analyzing quantitative trait loci for yield using a vegetatively replicated F2 population from a cross between the parents of an elite rice hybrid
    • Li, J. X., S. B. Yu, C. G. Xu, Y. F. Tan, Y. J. Gao et al., 2000 Analyzing quantitative trait loci for yield using a vegetatively replicated F2 population from a cross between the parents of an elite rice hybrid. Theor. Appl. Genet. 101: 248-254.
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 248-254
    • Li, J.X.1    Yu, S.B.2    Xu, C.G.3    Tan, Y.F.4    Gao, Y.J.5
  • 34
    • 34250312835 scopus 로고    scopus 로고
    • A planttransformation-competent BIBAC/BAC-based map of rice for functional analysis and genetic engineering of its genomic sequence
    • Li, Y., T. Uhm, C. Ren, C. Wu, T. S. Santos et al., 2007 A planttransformation-competent BIBAC/BAC-based map of rice for functional analysis and genetic engineering of its genomic sequence. Genome 50: 278-288.
    • (2007) Genome , vol.50 , pp. 278-288
    • Li, Y.1    Uhm, T.2    Ren, C.3    Wu, C.4    Santos, T.S.5
  • 35
    • 84863065036 scopus 로고    scopus 로고
    • Dynamic intra-japonica subspecies variation and resource application
    • Lin, H., P. Xia, R. A. Wing, Q. Zhang, and M. Luo, 2012 Dynamic intra-japonica subspecies variation and resource application. Mol. Plant 5: 218-230.
    • (2012) Mol. Plant , vol.5 , pp. 218-230
    • Lin, H.1    Xia, P.2    Wing, R.A.3    Zhang, Q.4    Luo, M.5
  • 36
    • 60549104200 scopus 로고    scopus 로고
    • Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
    • Lu, F., J. S. Ammiraju, A. Sanyal, S. Zhang, R. Song et al., 2009 Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proc. Natl. Acad. Sci. USA 106: 2071-2076.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 2071-2076
    • Lu, F.1    Ammiraju, J.S.2    Sanyal, A.3    Zhang, S.4    Song, R.5
  • 37
    • 1542548246 scopus 로고    scopus 로고
    • An improved method for plant BAC library construction
    • Luo, M., and R. A. Wing, 2003 An improved method for plant BAC library construction. Methods Mol. Biol. 236: 3-20.
    • (2003) Methods Mol. Biol. , vol.236 , pp. 3-20
    • Luo, M.1    Wing, R.A.2
  • 38
    • 0035056110 scopus 로고    scopus 로고
    • Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2)
    • Luo, M., Y. H. Wang, D. Frisch, T. Joobeur, R. A. Wing et al., 2001 Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2). Genome 44: 154-162.
    • (2001) Genome , vol.44 , pp. 154-162
    • Luo, M.1    Wang, Y.H.2    Frisch, D.3    Joobeur, T.4    Wing, R.A.5
  • 39
    • 33746366455 scopus 로고    scopus 로고
    • Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey
    • Luo, M., H. Kim, D. Kudrna, N. B. Sisneros, S. J. Lee et al., 2006 Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. BMC Genomics 7: 106.
    • (2006) BMC Genomics , vol.7 , pp. 106
    • Luo, M.1    Kim, H.2    Kudrna, D.3    Sisneros, N.B.4    Lee, S.J.5
  • 40
    • 12444325815 scopus 로고    scopus 로고
    • High-throughput fingerprinting of bacterial artificial chromosomes using the SNaPshot labeling kit and sizing of restriction fragments by capillary electrophoresis
    • Luo, M. C., C. Thomas, F. M. You, J. Hsiao, O. Y. Shu et al., 2003 High-throughput fingerprinting of bacterial artificial chromosomes using the SNaPshot labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics 82: 378-389.
    • (2003) Genomics , vol.82 , pp. 378-389
    • Luo, M.C.1    Thomas, C.2    You, F.M.3    Hsiao, J.4    Shu, O.Y.5
  • 41
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nuclear genomes
    • Ma, J., and J. L. Bennetzen, 2004 Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. USA 101: 12404-12410.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 42
    • 78650601870 scopus 로고    scopus 로고
    • Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
    • Mao, H., S. Sun, J. Yao, C. Wang, S. Yu et al., 2010 Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proc. Natl. Acad. Sci. USA 107: 19579-19584.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 19579-19584
    • Mao, H.1    Sun, S.2    Yao, J.3    Wang, C.4    Yu, S.5
  • 43
    • 0036928794 scopus 로고    scopus 로고
    • Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers
    • Nasu, S., J. Suzuki, R. Ohta, K. Hasegawa, R. Yui et al., 2002 Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers. DNA Res. 9: 163-171.
    • (2002) DNA Res. , vol.9 , pp. 163-171
    • Nasu, S.1    Suzuki, J.2    Ohta, R.3    Hasegawa, K.4    Yui, R.5
  • 44
    • 61849144443 scopus 로고    scopus 로고
    • The genomic architecture of segmental duplications and associated copy number variants in dogs
    • Nicholas, T. J., Z. Cheng, M. Ventura, K. Mealey, E. E. Eichler et al., 2009 The genomic architecture of segmental duplications and associated copy number variants in dogs. Genome Res. 19: 491-499.
    • (2009) Genome Res. , vol.19 , pp. 491-499
    • Nicholas, T.J.1    Cheng, Z.2    Ventura, M.3    Mealey, K.4    Eichler, E.E.5
  • 45
    • 84896718165 scopus 로고    scopus 로고
    • Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies
    • DOI: 10.1111/tpj.12412
    • Pan, Y., Y. Deng, H. Lin, D. A. Kudrna, R. A. Wing et al., 2013 Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies. Plant J. DOI: 10.1111/tpj.12412.
    • (2013) Plant J.
    • Pan, Y.1    Deng, Y.2    Lin, H.3    Kudrna, D.A.4    Wing, R.A.5
  • 46
    • 0033990048 scopus 로고    scopus 로고
    • Primer 3 on the WWW for general users and for biologist programmers
    • Rozen, S., and H. Skaletsky, 2000 Primer 3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 47
    • 48349120780 scopus 로고    scopus 로고
    • Deletion in a gene associated with grain size increased yields during rice domestication
    • Shomura, A., T. Izawa, K. Ebana, T. Ebitani, H. Kanegae et al., 2008 Deletion in a gene associated with grain size increased yields during rice domestication. Nat. Genet. 40: 1023-1028.
    • (2008) Nat. Genet. , vol.40 , pp. 1023-1028
    • Shomura, A.1    Izawa, T.2    Ebana, K.3    Ebitani, T.4    Kanegae, H.5
  • 48
    • 0033674122 scopus 로고    scopus 로고
    • Contigs built with fingerprints, markers, and FPC V4.7
    • Soderlund, C., S. Humphray, A. Dunham, and L. French, 2000 Contigs built with fingerprints, markers, and FPC V4.7. Genome Res. 10: 1772-1787.
    • (2000) Genome Res. , vol.10 , pp. 1772-1787
    • Soderlund, C.1    Humphray, S.2    Dunham, A.3    French, L.4
  • 49
    • 33748260755 scopus 로고    scopus 로고
    • SyMAP: A system for discovering and viewing syntenic regions of FPC maps
    • Soderlund, C., W. Nelson, A. Shoemaker, and A. Paterson, 2006 SyMAP: a system for discovering and viewing syntenic regions of FPC maps. Genome Res. 16: 1159-1168.
    • (2006) Genome Res. , vol.16 , pp. 1159-1168
    • Soderlund, C.1    Nelson, W.2    Shoemaker, A.3    Paterson, A.4
  • 50
    • 73649121258 scopus 로고    scopus 로고
    • Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
    • Springer, N. M., K. Ying, Y. Fu, T. Ji, C.-T. Yeh et al., 2009 Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet. 5: e1000734.
    • (2009) PLoS Genet. , vol.5
    • Springer, N.M.1    Ying, K.2    Fu, Y.3    Ji, T.4    Yeh, C.-T.5
  • 51
    • 18644378331 scopus 로고    scopus 로고
    • The generic genome browser: A building block for a model organism system database
    • Stein, L. D., C. Mungall, S. Shu, M. Caudy, M. Mangone et al., 2002 The generic genome browser: a building block for a model organism system database. Genome Res. 12: 1599-1610.
    • (2002) Genome Res. , vol.12 , pp. 1599-1610
    • Stein, L.D.1    Mungall, C.2    Shu, S.3    Caudy, M.4    Mangone, M.5
  • 52
    • 1342333402 scopus 로고    scopus 로고
    • Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein
    • Sun, X., Y. Cao, Z. Yang, C. Xu, X. Li et al., 2004 Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein. Plant J. 37: 517-527.
    • (2004) Plant J. , vol.37 , pp. 517-527
    • Sun, X.1    Cao, Y.2    Yang, Z.3    Xu, C.4    Li, X.5
  • 53
    • 33745385623 scopus 로고    scopus 로고
    • Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice
    • Sweeney, M. T., M. J. Thomson, B. E. Pfeil, and S. McCouch, 2006 Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. Plant Cell 18: 283-294.
    • (2006) Plant Cell , vol.18 , pp. 283-294
    • Sweeney, M.T.1    Thomson, M.J.2    Pfeil, B.E.3    McCouch, S.4
  • 55
    • 84887125553 scopus 로고    scopus 로고
    • Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives
    • Wang, C., X. Shi, L. Liu, H. Li, J. S. Ammiraju et al., 2013 Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics 195: 723-737.
    • (2013) Genetics , vol.195 , pp. 723-737
    • Wang, C.1    Shi, X.2    Liu, L.3    Li, H.4    Ammiraju, J.S.5
  • 56
    • 84890296167 scopus 로고    scopus 로고
    • A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens
    • Wang, X., Q. Liu, H. Wang, C. X. Luo, G. Wang et al., 2013 A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens. BMC Genomics 14: 883.
    • (2013) BMC Genomics , vol.14 , pp. 883
    • Wang, X.1    Liu, Q.2    Wang, H.3    Luo, C.X.4    Wang, G.5
  • 57
    • 77953796079 scopus 로고    scopus 로고
    • Parentindependent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
    • Xie, W., Q. Feng, H. Yu, X. Huang, Q. Zhao et al., 2010 Parentindependent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc. Natl. Acad. Sci. USA 107: 10578-10583.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 10578-10583
    • Xie, W.1    Feng, Q.2    Yu, H.3    Huang, X.4    Zhao, Q.5
  • 58
    • 0036937858 scopus 로고    scopus 로고
    • Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice
    • Xing, Y. Z., Y. F. Tan, J. P. Hua, X. L. Sun, C. G. Xu et al., 2002 Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice. Theor. Appl. Genet. 105: 248-257.
    • (2002) Theor. Appl. Genet. , vol.105 , pp. 248-257
    • Xing, Y.Z.1    Tan, Y.F.2    Hua, J.P.3    Sun, X.L.4    Xu, C.G.5
  • 59
    • 43749088351 scopus 로고    scopus 로고
    • Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice
    • Xue, W. Y., Y. Z. Xing, X. Y. Weng, Y. Zhao, W. J. Tang et al., 2008 Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat. Genet. 40: 761-767.
    • (2008) Nat. Genet. , vol.40 , pp. 761-767
    • Xue, W.Y.1    Xing, Y.Z.2    Weng, X.Y.3    Zhao, Y.4    Tang, W.J.5
  • 60
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
    • Yu, J., S. Hu, J. Wang, G. K. Wong, S. Li et al., 2002 A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296: 79-92.
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3    Wong, G.K.4    Li, S.5
  • 61
    • 20144366003 scopus 로고    scopus 로고
    • The genomes of Oryza sativa: A history of duplications
    • Yu, J., J. Wang, W. Lin, S. Li, H. Li et al., 2005 The genomes of Oryza sativa: a history of duplications. PLoS Biol. 3: e38.
    • (2005) PLoS Biol. , vol.3
    • Yu, J.1    Wang, J.2    Lin, W.3    Li, S.4    Li, H.5
  • 62
    • 34250167927 scopus 로고    scopus 로고
    • New insights into Oryza genome evolution: High gene colinearity and differential retrotransposon amplification
    • Zhang, S., Y. Q. Gu, J. Singh, D. Coleman-Derr, D. S. Brar et al., 2007 New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification. Plant Mol. Biol. 64: 589-600.
    • (2007) Plant Mol. Biol. , vol.64 , pp. 589-600
    • Zhang, S.1    Gu, Y.Q.2    Singh, J.3    Coleman-Derr, D.4    Brar, D.S.5
  • 63
    • 80052596511 scopus 로고    scopus 로고
    • A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes
    • Zhang, Y., X. Zhang, T. H. O'Hare, W. S. Payne, J. J. Dong et al., 2011 A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes. BMC Genomics 12: 447.
    • (2011) BMC Genomics , vol.12 , pp. 447
    • Zhang, Y.1    Zhang, X.2    O'Hare, T.H.3    Payne, W.S.4    Dong, J.J.5
  • 64
    • 6344222248 scopus 로고    scopus 로고
    • Human, mouse, and rat genome large-scale rearrangements: Stability vs. speciation
    • Zhao, S., J. Shetty, L. Hou, A. Delcher, B. Zhu et al., 2004 Human, mouse, and rat genome large-scale rearrangements: stability vs. speciation. Genome Res. 14: 1851-1860.
    • (2004) Genome Res. , vol.14 , pp. 1851-1860
    • Zhao, S.1    Shetty, J.2    Hou, L.3    Delcher, A.4    Zhu, B.5


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