-
1
-
-
67650754965
-
A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes
-
Aggarwal, R., T. R. Benatti, N. Gill, C. Zhao, M. S. Chen et al., 2009 A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes. BMC Genomics 10: 293.
-
(2009)
BMC Genomics
, vol.10
, pp. 293
-
-
Aggarwal, R.1
Benatti, T.R.2
Gill, N.3
Zhao, C.4
Chen, M.S.5
-
2
-
-
30044435245
-
The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage largeinsert BAC libraries that represent the 10 genome types of the genus Oryza
-
Ammiraju, J. S., M. Luo, J. L. Goicoechea, W. Wang, D. Kudrna et al., 2006 The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage largeinsert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res. 16: 140-147.
-
(2006)
Genome Res.
, vol.16
, pp. 140-147
-
-
Ammiraju, J.S.1
Luo, M.2
Goicoechea, J.L.3
Wang, W.4
Kudrna, D.5
-
3
-
-
62549137865
-
Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set
-
Ammiraju, J. S. S., F. Lu, A. Sanyal, Y. Yu, X. Song et al., 2008 Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. Plant Cell 20: 3191-3209.
-
(2008)
Plant Cell
, vol.20
, pp. 3191-3209
-
-
Ammiraju, J.S.S.1
Lu, F.2
Sanyal, A.3
Yu, Y.4
Song, X.5
-
4
-
-
77954893229
-
Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza
-
Ammiraju, J. S., C. Fan, Y. Yu, X. Song, K. A. Cranston et al., 2010a Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. Plant J. 63: 430-442.
-
(2010)
Plant J.
, vol.63
, pp. 430-442
-
-
Ammiraju, J.S.1
Fan, C.2
Yu, Y.3
Song, X.4
Cranston, K.A.5
-
5
-
-
78751521261
-
The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives
-
Ammiraju, J. S., X. Song, M. Luo, N. Sisneros, A. Angelova et al., 2010b The Oryza BAC resource: a genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives. Breed. Sci. 60: 536-543.
-
(2010)
Breed. Sci.
, vol.60
, pp. 536-543
-
-
Ammiraju, J.S.1
Song, X.2
Luo, M.3
Sisneros, N.4
Angelova, A.5
-
6
-
-
84898027865
-
Detection and correction of assembly errors of rice Nipponbare reference sequence
-
DOI: 10.1111/plb.12090
-
Deng, Y., Y. Pan, and M. Luo, 2013 Detection and correction of assembly errors of rice Nipponbare reference sequence. Plant Biol. DOI: 10.1111/plb.12090
-
(2013)
Plant Biol.
-
-
Deng, Y.1
Pan, Y.2
Luo, M.3
-
7
-
-
34447509197
-
Highly asymmetric rice genomes
-
Ding, J., H. Araki, Q. Wang, P. Zhang, S. Yang et al., 2007 Highly asymmetric rice genomes. BMC Genomics 8: 154.
-
(2007)
BMC Genomics
, vol.8
, pp. 154
-
-
Ding, J.1
Araki, H.2
Wang, Q.3
Zhang, P.4
Yang, S.5
-
8
-
-
33645409862
-
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
-
Fan, C., Y. Xing, H. Mao, T. Lu, B. Han et al., 2006 GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor. Appl. Genet. 112: 1164-1171.
-
(2006)
Theor. Appl. Genet.
, vol.112
, pp. 1164-1171
-
-
Fan, C.1
Xing, Y.2
Mao, H.3
Lu, T.4
Han, B.5
-
9
-
-
4644353880
-
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments
-
Feltus, F. A., J. Wan, S. R. Schulze, J. C. Estill, N. Jiang et al., 2004 An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Res. 14: 1812-1819.
-
(2004)
Genome Res.
, vol.14
, pp. 1812-1819
-
-
Feltus, F.A.1
Wan, J.2
Schulze, S.R.3
Estill, J.C.4
Jiang, N.5
-
10
-
-
70449678714
-
Analysis of collinear regions of Oryza AA and CC genomes
-
Feng, Q., T. Huang, Q. Zhao, J. Zhu, Z. Lin et al., 2009 Analysis of collinear regions of Oryza AA and CC genomes. J. Genet. Genomics 36: 667-677.
-
(2009)
J. Genet. Genomics
, vol.36
, pp. 667-677
-
-
Feng, Q.1
Huang, T.2
Zhao, Q.3
Zhu, J.4
Lin, Z.5
-
11
-
-
84883340052
-
Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences
-
Gao, Z. Y., S. C. Zhao, W. M. He, L. B. Guo, Y. L. Peng et al., 2013 Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences. Proc. Natl. Acad. Sci. USA 110: 14492-14497.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 14492-14497
-
-
Gao, Z.Y.1
Zhao, S.C.2
He, W.M.3
Guo, L.B.4
Peng, Y.L.5
-
12
-
-
17444386263
-
Genetic structure and diversity in Oryza sativa L
-
Garris, A. J., T. H. Tai, J. Coburn, and S. Kresovich, and S. McCouch, 2005 Genetic structure and diversity in Oryza sativa L. Genetics 169: 1631-1638.
-
(2005)
Genetics
, vol.169
, pp. 1631-1638
-
-
Garris, A.J.1
Tai, T.H.2
Coburn, J.3
Kresovich, S.4
McCouch, S.5
-
13
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
Gotz, S., J.M. Garcia-Gomez, J. Terol, T. D. Williams, S.H. Nagaraj et al., 2008 High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36: 3420-3435.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3420-3435
-
-
Gotz, S.1
Garcia-Gomez, J.M.2
Terol, J.3
Williams, T.D.4
Nagaraj, S.H.5
-
14
-
-
0037394626
-
Genome-wide intraspecific DNA-sequence variations in rice
-
Han, B., and Y. Xue, 2003 Genome-wide intraspecific DNA-sequence variations in rice. Curr. Opin. Plant Biol. 6: 134-138.
-
(2003)
Curr. Opin. Plant Biol.
, vol.6
, pp. 134-138
-
-
Han, B.1
Xue, Y.2
-
15
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang, X., and A. Madan, 1999 CAP3: a DNA sequence assembly program. Genome Res. 9: 868-877.
-
(1999)
Genome Res.
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
16
-
-
78049332150
-
Genomewide association studies of 14 agronomic traits in rice landraces
-
Huang, X., X. Wei, T. Sang, Q. Zhao, Q. Feng et al., 2010 Genomewide association studies of 14 agronomic traits in rice landraces. Nat. Genet. 42: 961-967.
-
(2010)
Nat. Genet.
, vol.42
, pp. 961-967
-
-
Huang, X.1
Wei, X.2
Sang, T.3
Zhao, Q.4
Feng, Q.5
-
17
-
-
55549123888
-
Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice
-
Huang, X. H., G. J. Lu, Q. Zhao, X. H. Liu, and B. Han, 2008 Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice. Plant Physiol. 148: 25-40.
-
(2008)
Plant Physiol.
, vol.148
, pp. 25-40
-
-
Huang, X.H.1
Lu, G.J.2
Zhao, Q.3
Liu, X.H.4
Han, B.5
-
18
-
-
84867875610
-
A map of rice genome variation reveals the origin of cultivated rice
-
Huang, X. H., N. Kurata, X. H. Wei, Z. X. Wang, A. Wang et al., 2012 A map of rice genome variation reveals the origin of cultivated rice. Nature 490: 497-501.
-
(2012)
Nature
, vol.490
, pp. 497-501
-
-
Huang, X.H.1
Kurata, N.2
Wei, X.H.3
Wang, Z.X.4
Wang, A.5
-
19
-
-
77956828564
-
Rice structural variation: A comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza
-
Hurwitz, B. L., D. Kudrna, Y. Yu, A. Sebastian, A. Zuccolo et al., 2010 Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza. Plant J. 63: 990-1003.
-
(2010)
Plant J.
, vol.63
, pp. 990-1003
-
-
Hurwitz, B.L.1
Kudrna, D.2
Yu, Y.3
Sebastian, A.4
Zuccolo, A.5
-
20
-
-
84907150192
-
The mapbased sequence of the rice genome
-
International Rice Genome Sequencing Project
-
International Rice Genome Sequencing Project, 2005 The mapbased sequence of the rice genome. Nature 436: 793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
21
-
-
84878547485
-
The International Oryza Map Alignment Project: Development of a genus-wide comparative genomics platform to help solve the 9 billion-people question
-
Jacquemin, J., D. Bhatia, K. Singh, and R. A. Wing, 2013 The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Curr. Opin. Plant Biol. 16: 147-156.
-
(2013)
Curr. Opin. Plant Biol.
, vol.16
, pp. 147-156
-
-
Jacquemin, J.1
Bhatia, D.2
Singh, K.3
Wing, R.A.4
-
22
-
-
55049123655
-
Genetic control of rice plant architecture under domestication
-
Jin, J., W. Huang, J.-P. Gao, J. Yang, M. Shi et al., 2008 Genetic control of rice plant architecture under domestication. Nat. Genet. 40: 1365-1369.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1365-1369
-
-
Jin, J.1
Huang, W.2
Gao, J.-P.3
Yang, J.4
Shi, M.5
-
23
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
Jurka, J., V. V. Kapitonov, A. Pavlicek, P. Klonowski, O. Kohany et al., 2005 Repbase update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110: 462-467.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
-
24
-
-
84885960825
-
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
-
Kawahara, Y., M. de la Bastide, J. P. Hamilton, H. Kanamori, W. R. McCombie et al., 2013 Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice 6: 1-10.
-
(2013)
Rice
, vol.6
, pp. 1-10
-
-
Kawahara, Y.1
de la Bastide, M.2
Hamilton, J.P.3
Kanamori, H.4
McCombie, W.R.5
-
25
-
-
43049143055
-
Mapping and sequencing of structural variation from eight human genomes
-
Kidd, J. M., G. M. Cooper, W. F. Donahue, H. S. Hayden, N. Sampas et al., 2008 Mapping and sequencing of structural variation from eight human genomes. Nature 453: 56-64.
-
(2008)
Nature
, vol.453
, pp. 56-64
-
-
Kidd, J.M.1
Cooper, G.M.2
Donahue, W.F.3
Hayden, H.S.4
Sampas, N.5
-
26
-
-
34548588693
-
Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type)
-
Kim, H., P. San Miguel, W. Nelson, K. Collura, M. Wissotski et al., 2007 Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics 176: 379-390.
-
(2007)
Genetics
, vol.176
, pp. 379-390
-
-
Kim, H.1
San Miguel, P.2
Nelson, W.3
Collura, K.4
Wissotski, M.5
-
27
-
-
43549125262
-
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
-
Kim, H., B. Hurwitz, Y. Yu, K. Collura, N. Gill et al., 2008 Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biol. 9: R45.
-
(2008)
Genome Biol.
, vol.9
-
-
Kim, H.1
Hurwitz, B.2
Yu, Y.3
Collura, K.4
Gill, N.5
-
28
-
-
34547852208
-
SciRoKo: A new tool for whole genome microsatellite search and investigation
-
Kofler, R., C. Schlotterer, and T. Lelley, 2007 SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics 23: 1683-1685.
-
(2007)
Bioinformatics
, vol.23
, pp. 1683-1685
-
-
Kofler, R.1
Schlotterer, C.2
Lelley, T.3
-
29
-
-
33744830059
-
An SNP caused loss of seed shattering during rice domestication
-
Konishi, S., T. Izawa, S. Y. Lin, K. Ebana, Y. Fukuta et al., 2006 An SNP caused loss of seed shattering during rice domestication. Science 312: 1392-1396.
-
(2006)
Science
, vol.312
, pp. 1392-1396
-
-
Konishi, S.1
Izawa, T.2
Lin, S.Y.3
Ebana, K.4
Fukuta, Y.5
-
30
-
-
35748969870
-
New insights into the history of rice domestication
-
Kovach, M. J., M. T. Sweeney, and S. R. McCouch, 2007 New insights into the history of rice domestication. Trends Genet. 23: 578-587.
-
(2007)
Trends Genet.
, vol.23
, pp. 578-587
-
-
Kovach, M.J.1
Sweeney, M.T.2
McCouch, S.R.3
-
31
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., and S. L. Salzberg, 2012 Fast gapped-read alignment with Bowtie 2. Nat. Methods 9: 357-359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
32
-
-
33645469056
-
Rice domestication by reducing shattering
-
Li, C., A. Zhou, and T. Sang, 2006 Rice domestication by reducing shattering. Science 311: 1936-1939.
-
(2006)
Science
, vol.311
, pp. 1936-1939
-
-
Li, C.1
Zhou, A.2
Sang, T.3
-
33
-
-
0033929144
-
Analyzing quantitative trait loci for yield using a vegetatively replicated F2 population from a cross between the parents of an elite rice hybrid
-
Li, J. X., S. B. Yu, C. G. Xu, Y. F. Tan, Y. J. Gao et al., 2000 Analyzing quantitative trait loci for yield using a vegetatively replicated F2 population from a cross between the parents of an elite rice hybrid. Theor. Appl. Genet. 101: 248-254.
-
(2000)
Theor. Appl. Genet.
, vol.101
, pp. 248-254
-
-
Li, J.X.1
Yu, S.B.2
Xu, C.G.3
Tan, Y.F.4
Gao, Y.J.5
-
34
-
-
34250312835
-
A planttransformation-competent BIBAC/BAC-based map of rice for functional analysis and genetic engineering of its genomic sequence
-
Li, Y., T. Uhm, C. Ren, C. Wu, T. S. Santos et al., 2007 A planttransformation-competent BIBAC/BAC-based map of rice for functional analysis and genetic engineering of its genomic sequence. Genome 50: 278-288.
-
(2007)
Genome
, vol.50
, pp. 278-288
-
-
Li, Y.1
Uhm, T.2
Ren, C.3
Wu, C.4
Santos, T.S.5
-
35
-
-
84863065036
-
Dynamic intra-japonica subspecies variation and resource application
-
Lin, H., P. Xia, R. A. Wing, Q. Zhang, and M. Luo, 2012 Dynamic intra-japonica subspecies variation and resource application. Mol. Plant 5: 218-230.
-
(2012)
Mol. Plant
, vol.5
, pp. 218-230
-
-
Lin, H.1
Xia, P.2
Wing, R.A.3
Zhang, Q.4
Luo, M.5
-
36
-
-
60549104200
-
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
-
Lu, F., J. S. Ammiraju, A. Sanyal, S. Zhang, R. Song et al., 2009 Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proc. Natl. Acad. Sci. USA 106: 2071-2076.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 2071-2076
-
-
Lu, F.1
Ammiraju, J.S.2
Sanyal, A.3
Zhang, S.4
Song, R.5
-
37
-
-
1542548246
-
An improved method for plant BAC library construction
-
Luo, M., and R. A. Wing, 2003 An improved method for plant BAC library construction. Methods Mol. Biol. 236: 3-20.
-
(2003)
Methods Mol. Biol.
, vol.236
, pp. 3-20
-
-
Luo, M.1
Wing, R.A.2
-
38
-
-
0035056110
-
Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2)
-
Luo, M., Y. H. Wang, D. Frisch, T. Joobeur, R. A. Wing et al., 2001 Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2). Genome 44: 154-162.
-
(2001)
Genome
, vol.44
, pp. 154-162
-
-
Luo, M.1
Wang, Y.H.2
Frisch, D.3
Joobeur, T.4
Wing, R.A.5
-
39
-
-
33746366455
-
Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey
-
Luo, M., H. Kim, D. Kudrna, N. B. Sisneros, S. J. Lee et al., 2006 Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. BMC Genomics 7: 106.
-
(2006)
BMC Genomics
, vol.7
, pp. 106
-
-
Luo, M.1
Kim, H.2
Kudrna, D.3
Sisneros, N.B.4
Lee, S.J.5
-
40
-
-
12444325815
-
High-throughput fingerprinting of bacterial artificial chromosomes using the SNaPshot labeling kit and sizing of restriction fragments by capillary electrophoresis
-
Luo, M. C., C. Thomas, F. M. You, J. Hsiao, O. Y. Shu et al., 2003 High-throughput fingerprinting of bacterial artificial chromosomes using the SNaPshot labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics 82: 378-389.
-
(2003)
Genomics
, vol.82
, pp. 378-389
-
-
Luo, M.C.1
Thomas, C.2
You, F.M.3
Hsiao, J.4
Shu, O.Y.5
-
41
-
-
4344616881
-
Rapid recent growth and divergence of rice nuclear genomes
-
Ma, J., and J. L. Bennetzen, 2004 Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. USA 101: 12404-12410.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12404-12410
-
-
Ma, J.1
Bennetzen, J.L.2
-
42
-
-
78650601870
-
Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
-
Mao, H., S. Sun, J. Yao, C. Wang, S. Yu et al., 2010 Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proc. Natl. Acad. Sci. USA 107: 19579-19584.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 19579-19584
-
-
Mao, H.1
Sun, S.2
Yao, J.3
Wang, C.4
Yu, S.5
-
43
-
-
0036928794
-
Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers
-
Nasu, S., J. Suzuki, R. Ohta, K. Hasegawa, R. Yui et al., 2002 Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers. DNA Res. 9: 163-171.
-
(2002)
DNA Res.
, vol.9
, pp. 163-171
-
-
Nasu, S.1
Suzuki, J.2
Ohta, R.3
Hasegawa, K.4
Yui, R.5
-
44
-
-
61849144443
-
The genomic architecture of segmental duplications and associated copy number variants in dogs
-
Nicholas, T. J., Z. Cheng, M. Ventura, K. Mealey, E. E. Eichler et al., 2009 The genomic architecture of segmental duplications and associated copy number variants in dogs. Genome Res. 19: 491-499.
-
(2009)
Genome Res.
, vol.19
, pp. 491-499
-
-
Nicholas, T.J.1
Cheng, Z.2
Ventura, M.3
Mealey, K.4
Eichler, E.E.5
-
45
-
-
84896718165
-
Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies
-
DOI: 10.1111/tpj.12412
-
Pan, Y., Y. Deng, H. Lin, D. A. Kudrna, R. A. Wing et al., 2013 Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies. Plant J. DOI: 10.1111/tpj.12412.
-
(2013)
Plant J.
-
-
Pan, Y.1
Deng, Y.2
Lin, H.3
Kudrna, D.A.4
Wing, R.A.5
-
46
-
-
0033990048
-
Primer 3 on the WWW for general users and for biologist programmers
-
Rozen, S., and H. Skaletsky, 2000 Primer 3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
47
-
-
48349120780
-
Deletion in a gene associated with grain size increased yields during rice domestication
-
Shomura, A., T. Izawa, K. Ebana, T. Ebitani, H. Kanegae et al., 2008 Deletion in a gene associated with grain size increased yields during rice domestication. Nat. Genet. 40: 1023-1028.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1023-1028
-
-
Shomura, A.1
Izawa, T.2
Ebana, K.3
Ebitani, T.4
Kanegae, H.5
-
48
-
-
0033674122
-
Contigs built with fingerprints, markers, and FPC V4.7
-
Soderlund, C., S. Humphray, A. Dunham, and L. French, 2000 Contigs built with fingerprints, markers, and FPC V4.7. Genome Res. 10: 1772-1787.
-
(2000)
Genome Res.
, vol.10
, pp. 1772-1787
-
-
Soderlund, C.1
Humphray, S.2
Dunham, A.3
French, L.4
-
49
-
-
33748260755
-
SyMAP: A system for discovering and viewing syntenic regions of FPC maps
-
Soderlund, C., W. Nelson, A. Shoemaker, and A. Paterson, 2006 SyMAP: a system for discovering and viewing syntenic regions of FPC maps. Genome Res. 16: 1159-1168.
-
(2006)
Genome Res.
, vol.16
, pp. 1159-1168
-
-
Soderlund, C.1
Nelson, W.2
Shoemaker, A.3
Paterson, A.4
-
50
-
-
73649121258
-
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
-
Springer, N. M., K. Ying, Y. Fu, T. Ji, C.-T. Yeh et al., 2009 Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet. 5: e1000734.
-
(2009)
PLoS Genet.
, vol.5
-
-
Springer, N.M.1
Ying, K.2
Fu, Y.3
Ji, T.4
Yeh, C.-T.5
-
51
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein, L. D., C. Mungall, S. Shu, M. Caudy, M. Mangone et al., 2002 The generic genome browser: a building block for a model organism system database. Genome Res. 12: 1599-1610.
-
(2002)
Genome Res.
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
-
52
-
-
1342333402
-
Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein
-
Sun, X., Y. Cao, Z. Yang, C. Xu, X. Li et al., 2004 Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein. Plant J. 37: 517-527.
-
(2004)
Plant J.
, vol.37
, pp. 517-527
-
-
Sun, X.1
Cao, Y.2
Yang, Z.3
Xu, C.4
Li, X.5
-
53
-
-
33745385623
-
Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice
-
Sweeney, M. T., M. J. Thomson, B. E. Pfeil, and S. McCouch, 2006 Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. Plant Cell 18: 283-294.
-
(2006)
Plant Cell
, vol.18
, pp. 283-294
-
-
Sweeney, M.T.1
Thomson, M.J.2
Pfeil, B.E.3
McCouch, S.4
-
54
-
-
22844451617
-
Fine-scale structural variation of the human genome
-
Tuzun, E., A. J. Sharp, J. A. Bailey, R. Kaul, V. A. Morrison et al., 2005 Fine-scale structural variation of the human genome. Nat. Genet. 37: 727-732.
-
(2005)
Nat. Genet.
, vol.37
, pp. 727-732
-
-
Tuzun, E.1
Sharp, A.J.2
Bailey, J.A.3
Kaul, R.4
Morrison, V.A.5
-
55
-
-
84887125553
-
Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives
-
Wang, C., X. Shi, L. Liu, H. Li, J. S. Ammiraju et al., 2013 Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics 195: 723-737.
-
(2013)
Genetics
, vol.195
, pp. 723-737
-
-
Wang, C.1
Shi, X.2
Liu, L.3
Li, H.4
Ammiraju, J.S.5
-
56
-
-
84890296167
-
A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens
-
Wang, X., Q. Liu, H. Wang, C. X. Luo, G. Wang et al., 2013 A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens. BMC Genomics 14: 883.
-
(2013)
BMC Genomics
, vol.14
, pp. 883
-
-
Wang, X.1
Liu, Q.2
Wang, H.3
Luo, C.X.4
Wang, G.5
-
57
-
-
77953796079
-
Parentindependent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
-
Xie, W., Q. Feng, H. Yu, X. Huang, Q. Zhao et al., 2010 Parentindependent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc. Natl. Acad. Sci. USA 107: 10578-10583.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 10578-10583
-
-
Xie, W.1
Feng, Q.2
Yu, H.3
Huang, X.4
Zhao, Q.5
-
58
-
-
0036937858
-
Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice
-
Xing, Y. Z., Y. F. Tan, J. P. Hua, X. L. Sun, C. G. Xu et al., 2002 Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice. Theor. Appl. Genet. 105: 248-257.
-
(2002)
Theor. Appl. Genet.
, vol.105
, pp. 248-257
-
-
Xing, Y.Z.1
Tan, Y.F.2
Hua, J.P.3
Sun, X.L.4
Xu, C.G.5
-
59
-
-
43749088351
-
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice
-
Xue, W. Y., Y. Z. Xing, X. Y. Weng, Y. Zhao, W. J. Tang et al., 2008 Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat. Genet. 40: 761-767.
-
(2008)
Nat. Genet.
, vol.40
, pp. 761-767
-
-
Xue, W.Y.1
Xing, Y.Z.2
Weng, X.Y.3
Zhao, Y.4
Tang, W.J.5
-
60
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
Yu, J., S. Hu, J. Wang, G. K. Wong, S. Li et al., 2002 A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296: 79-92.
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Wong, G.K.4
Li, S.5
-
61
-
-
20144366003
-
The genomes of Oryza sativa: A history of duplications
-
Yu, J., J. Wang, W. Lin, S. Li, H. Li et al., 2005 The genomes of Oryza sativa: a history of duplications. PLoS Biol. 3: e38.
-
(2005)
PLoS Biol.
, vol.3
-
-
Yu, J.1
Wang, J.2
Lin, W.3
Li, S.4
Li, H.5
-
62
-
-
34250167927
-
New insights into Oryza genome evolution: High gene colinearity and differential retrotransposon amplification
-
Zhang, S., Y. Q. Gu, J. Singh, D. Coleman-Derr, D. S. Brar et al., 2007 New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification. Plant Mol. Biol. 64: 589-600.
-
(2007)
Plant Mol. Biol.
, vol.64
, pp. 589-600
-
-
Zhang, S.1
Gu, Y.Q.2
Singh, J.3
Coleman-Derr, D.4
Brar, D.S.5
-
63
-
-
80052596511
-
A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes
-
Zhang, Y., X. Zhang, T. H. O'Hare, W. S. Payne, J. J. Dong et al., 2011 A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes. BMC Genomics 12: 447.
-
(2011)
BMC Genomics
, vol.12
, pp. 447
-
-
Zhang, Y.1
Zhang, X.2
O'Hare, T.H.3
Payne, W.S.4
Dong, J.J.5
-
64
-
-
6344222248
-
Human, mouse, and rat genome large-scale rearrangements: Stability vs. speciation
-
Zhao, S., J. Shetty, L. Hou, A. Delcher, B. Zhu et al., 2004 Human, mouse, and rat genome large-scale rearrangements: stability vs. speciation. Genome Res. 14: 1851-1860.
-
(2004)
Genome Res.
, vol.14
, pp. 1851-1860
-
-
Zhao, S.1
Shetty, J.2
Hou, L.3
Delcher, A.4
Zhu, B.5
|