메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL GENETICS; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BREEDING; CENTROMERE; CHICKEN; CHROMOSOME INVERSION; COMPARATIVE STUDY; CONTIG MAPPING; CONTROLLED STUDY; GENE MAPPING; GENE REARRANGEMENT; GENE SEQUENCE; GENETICS; GENOME ANALYSIS; KARYOTYPE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; QUANTITATIVE TRAIT; TELOMERE; TURKEY (BIRD); UNINDEXED SEQUENCE; ANIMAL; COMPARATIVE GENOMIC HYBRIDIZATION; DNA FINGERPRINTING; DNA SEQUENCE; EVOLUTION; GENE LIBRARY; GENOMICS;

EID: 80052596511     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-447     Document Type: Article
Times cited : (22)

References (65)
  • 1
    • 80053587904 scopus 로고    scopus 로고
    • FAOSTAT: Production Database
    • FAO
    • FAO FAOSTAT: Production Database. FAO., http://faostat.fao.org/
  • 2
    • 0036038208 scopus 로고    scopus 로고
    • Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes
    • 10.1016/S1055-7903(02)00230-0, 12144757
    • Dimcheff DE, Drovetski SV, Mindell DP. Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes. Mol Phylogenet Evol 2002, 24:203-215. 10.1016/S1055-7903(02)00230-0, 12144757.
    • (2002) Mol Phylogenet Evol , vol.24 , pp. 203-215
    • Dimcheff, D.E.1    Drovetski, S.V.2    Mindell, D.P.3
  • 3
    • 0347093513 scopus 로고    scopus 로고
    • Calibration of galliform molecular clocks using multiple fossils and genetic partitions
    • 10.1016/S1055-7903(03)00164-7, 15022759
    • van Tuinen M, Dyke GJ. Calibration of galliform molecular clocks using multiple fossils and genetic partitions. Mol Phylogenet Evol 2004, 30:74-86. 10.1016/S1055-7903(03)00164-7, 15022759.
    • (2004) Mol Phylogenet Evol , vol.30 , pp. 74-86
    • van Tuinen, M.1    Dyke, G.J.2
  • 4
    • 1842757844 scopus 로고    scopus 로고
    • Karyotypic evolution in the Galliformes: An examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny
    • 10.1159/000078570, 15218250
    • Shibusawa M, Nishibori M, Nishida-Umehara C, Tsudzuki M, Masabanda J, Griffin DK, Matsuda Y. Karyotypic evolution in the Galliformes: An examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny. Cytogenet Genome Res 2004, 106:111-119. 10.1159/000078570, 15218250.
    • (2004) Cytogenet Genome Res , vol.106 , pp. 111-119
    • Shibusawa, M.1    Nishibori, M.2    Nishida-Umehara, C.3    Tsudzuki, M.4    Masabanda, J.5    Griffin, D.K.6    Matsuda, Y.7
  • 11
    • 79961187817 scopus 로고    scopus 로고
    • Map-based cloning of genes and quantitative trait loci
    • Enfield: Science Publishers, Kole C, Abbott A
    • Zhang HB. Map-based cloning of genes and quantitative trait loci. Principles and Practices of Plant Genomics. Volume 1. Genome Mapping 2008, 229-267. Enfield: Science Publishers, Kole C, Abbott A.
    • (2008) Principles and Practices of Plant Genomics. Volume 1. Genome Mapping , pp. 229-267
    • Zhang, H.B.1
  • 14
    • 75149155568 scopus 로고    scopus 로고
    • The sequence and de novo assembly of the giant panda genome
    • 10.1038/nature08696, 20010809
    • Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, et al. The sequence and de novo assembly of the giant panda genome. Nature 2010, 463:311-317. 10.1038/nature08696, 20010809.
    • (2010) Nature , vol.463 , pp. 311-317
    • Li, R.1    Fan, W.2    Tian, G.3    Zhu, H.4    He, L.5    Cai, J.6    Huang, Q.7    Cai, Q.8    Li, B.9    Bai, Y.10
  • 20
    • 70649103169 scopus 로고    scopus 로고
    • A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
    • 10.1186/1471-2164-10-563, 3087558, 19943974
    • Gu YQ, Ma YQ, Huo NX, Vogel JP, You FM, Lazo GR, Nelson WM, Soderlund C, Dvorak J, Anderson OD, et al. A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat. BMC Genomics 2009, 10:563. 10.1186/1471-2164-10-563, 3087558, 19943974.
    • (2009) BMC Genomics , vol.10 , pp. 563
    • Gu, Y.Q.1    Ma, Y.Q.2    Huo, N.X.3    Vogel, J.P.4    You, F.M.5    Lazo, G.R.6    Nelson, W.M.7    Soderlund, C.8    Dvorak, J.9    Anderson, O.D.10
  • 21
    • 0345581703 scopus 로고    scopus 로고
    • Preliminary linkage map of the turkey (Meleagris gallopavo) based on microsatellite markers
    • 10.1046/j.1365-2052.2003.01033.x, 14687069
    • Burt DW, Morrice DR, Sewalem A, Smith J, Paton IR, Smith EJ, Bentley J, Hocking PM. Preliminary linkage map of the turkey (Meleagris gallopavo) based on microsatellite markers. Anim Genet 2003, 34:399-409. 10.1046/j.1365-2052.2003.01033.x, 14687069.
    • (2003) Anim Genet , vol.34 , pp. 399-409
    • Burt, D.W.1    Morrice, D.R.2    Sewalem, A.3    Smith, J.4    Paton, I.R.5    Smith, E.J.6    Bentley, J.7    Hocking, P.M.8
  • 22
    • 0345358543 scopus 로고    scopus 로고
    • A first-generation map of the turkey genome
    • 10.1139/g03-042, 14608408
    • Harry DE, Zaitlin D, Marini PJ, Reed KM. A first-generation map of the turkey genome. Genome 2003, 46:914-924. 10.1139/g03-042, 14608408.
    • (2003) Genome , vol.46 , pp. 914-924
    • Harry, D.E.1    Zaitlin, D.2    Marini, P.J.3    Reed, K.M.4
  • 23
    • 12744271852 scopus 로고    scopus 로고
    • Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes
    • 10.1101/gr.3021305, 540272, 15590944
    • Axelsson E, Webster MT, Smith NG, Burt DW, Ellegren H. Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Res 2005, 15:120-125. 10.1101/gr.3021305, 540272, 15590944.
    • (2005) Genome Res , vol.15 , pp. 120-125
    • Axelsson, E.1    Webster, M.T.2    Smith, N.G.3    Burt, D.W.4    Ellegren, H.5
  • 25
    • 37549063985 scopus 로고    scopus 로고
    • An integrated and comparative genetic map of the turkey genome
    • 10.1159/000109627, 18160790
    • Reed KM, Chaves LD, Mendoza KM. An integrated and comparative genetic map of the turkey genome. Cytogenet Genome Res 2007, 119:113-126. 10.1159/000109627, 18160790.
    • (2007) Cytogenet Genome Res , vol.119 , pp. 113-126
    • Reed, K.M.1    Chaves, L.D.2    Mendoza, K.M.3
  • 26
    • 78349241341 scopus 로고    scopus 로고
    • A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the turkey and chicken genomes
    • 10.1186/1471-2164-11-647, 3091770, 21092123
    • Aslam ML, Bastiaansen JWM, Crooijmans RPMA, Vereijken A, Megens HJ, Groenen MAM. A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the turkey and chicken genomes. BMC Genomics 2010, 11:647. 10.1186/1471-2164-11-647, 3091770, 21092123.
    • (2010) BMC Genomics , vol.11 , pp. 647
    • Aslam, M.L.1    Bastiaansen, J.W.M.2    Crooijmans, R.P.M.A.3    Vereijken, A.4    Megens, H.J.5    Groenen, M.A.M.6
  • 27
    • 0033674122 scopus 로고    scopus 로고
    • Contigs built with fingerprints, markers, and FPC V4.7
    • 10.1101/gr.GR-1375R, 310962, 11076862
    • Soderlund C, Humphray S, Dunham A, French L. Contigs built with fingerprints, markers, and FPC V4.7. Genome Res 2000, 10:1772-1787. 10.1101/gr.GR-1375R, 310962, 11076862.
    • (2000) Genome Res , vol.10 , pp. 1772-1787
    • Soderlund, C.1    Humphray, S.2    Dunham, A.3    French, L.4
  • 28
    • 0035675041 scopus 로고    scopus 로고
    • An integrated map of Arabidopsis thaliana for functional analysis of its genome sequence
    • 1461882, 11729165
    • Chang YL, Tao QZ, Scheuring C, Ding KJ, Meksem K, Zhang HB. An integrated map of Arabidopsis thaliana for functional analysis of its genome sequence. Genetics 2001, 159:1231-1242. 1461882, 11729165.
    • (2001) Genetics , vol.159 , pp. 1231-1242
    • Chang, Y.L.1    Tao, Q.Z.2    Scheuring, C.3    Ding, K.J.4    Meksem, K.5    Zhang, H.B.6
  • 29
    • 0034844163 scopus 로고    scopus 로고
    • Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis
    • 1461754, 11514457
    • Tao QZ, Chang YL, Wang JZ, Chen HM, Islam-Faridi MN, Scheuring C, Wang B, Stelly DM, Zhang HB. Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis. Genetics 2001, 158:1711-1724. 1461754, 11514457.
    • (2001) Genetics , vol.158 , pp. 1711-1724
    • Tao, Q.Z.1    Chang, Y.L.2    Wang, J.Z.3    Chen, H.M.4    Islam-Faridi, M.N.5    Scheuring, C.6    Wang, B.7    Stelly, D.M.8    Zhang, H.B.9
  • 31
    • 5344263062 scopus 로고    scopus 로고
    • Construction and characterization of a soybean bacterial artificial chromosome library and use of multiple complementary libraries for genome physical mapping
    • 10.1007/s00122-004-1712-y, 15164176
    • Wu CC, Nimmakayala P, Santos FA, Springman R, Scheuring C, Meksem K, Lightfoot DA, Zhang HB. Construction and characterization of a soybean bacterial artificial chromosome library and use of multiple complementary libraries for genome physical mapping. Theor Appl Genet 2004, 109:1041-1050. 10.1007/s00122-004-1712-y, 15164176.
    • (2004) Theor Appl Genet , vol.109 , pp. 1041-1050
    • Wu, C.C.1    Nimmakayala, P.2    Santos, F.A.3    Springman, R.4    Scheuring, C.5    Meksem, K.6    Lightfoot, D.A.7    Zhang, H.B.8
  • 33
    • 7944222317 scopus 로고    scopus 로고
    • Genome physical mapping with large-insert bacterial clones by fingerprint analysis: methodologies, source clone genome coverage, and contig map quality
    • 10.1016/j.ygeno.2004.08.014, 15533711
    • Xu ZY, Sun SK, Covaleda L, Ding K, Zhang AM, Wu CC, Scheuring C, Zhang HB. Genome physical mapping with large-insert bacterial clones by fingerprint analysis: methodologies, source clone genome coverage, and contig map quality. Genomics 2004, 84:941-951. 10.1016/j.ygeno.2004.08.014, 15533711.
    • (2004) Genomics , vol.84 , pp. 941-951
    • Xu, Z.Y.1    Sun, S.K.2    Covaleda, L.3    Ding, K.4    Zhang, A.M.5    Wu, C.C.6    Scheuring, C.7    Zhang, H.B.8
  • 34
    • 26444503758 scopus 로고    scopus 로고
    • Genome physical mapping from large-insert clones by fingerprint analysis with capillary electrophoresis: a robust physical map of Penicillium chrysogenum
    • 10.1093/nar/gni037, 1065262, 15767275
    • Xu ZY, van den Berg MA, Scheuring C, Covaleda L, Lu H, Santos FA, Uhm T, Lee MK, Wu CC, Liu S, et al. Genome physical mapping from large-insert clones by fingerprint analysis with capillary electrophoresis: a robust physical map of Penicillium chrysogenum. Nucleic Acids Res 2005, 33:e50. 10.1093/nar/gni037, 1065262, 15767275.
    • (2005) Nucleic Acids Res , vol.33
    • Xu, Z.Y.1    van den Berg, M.A.2    Scheuring, C.3    Covaleda, L.4    Lu, H.5    Santos, F.A.6    Uhm, T.7    Lee, M.K.8    Wu, C.C.9    Liu, S.10
  • 36
    • 35948969243 scopus 로고    scopus 로고
    • Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
    • 10.1101/gr.6775107, 2045143, 17921355
    • Gordon L, Yang S, Tran-Gyamfi M, Baggott D, Christensen M, Hamilton A, Crooijmans R, Groenen M, Lucas S, Ovcharenko I, et al. Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions. Genome Res 2007, 17:1603-1613. 10.1101/gr.6775107, 2045143, 17921355.
    • (2007) Genome Res , vol.17 , pp. 1603-1613
    • Gordon, L.1    Yang, S.2    Tran-Gyamfi, M.3    Baggott, D.4    Christensen, M.5    Hamilton, A.6    Crooijmans, R.7    Groenen, M.8    Lucas, S.9    Ovcharenko, I.10
  • 40
    • 28244482858 scopus 로고    scopus 로고
    • Structural organization and chromosomal location of the chicken alpha-amylase gene family
    • Benkel BF, Nguyen T, Uno Y, Ponce de Leon FA, Hickey DA. Structural organization and chromosomal location of the chicken alpha-amylase gene family. Gene 2005, 362:117-124.
    • (2005) Gene , vol.362 , pp. 117-124
    • Benkel, B.F.1    Nguyen, T.2    Uno, Y.3    Ponce de Leon, F.A.4    Hickey, D.A.5
  • 41
    • 79955481394 scopus 로고    scopus 로고
    • Poultry genome sequences: progress and outstanding challenges
    • 10.1159/000324413, 21335957
    • Dodgson JB, Delany ME, Cheng HH. Poultry genome sequences: progress and outstanding challenges. Cytogenet Genome Res 2011, 134:19-26. 10.1159/000324413, 21335957.
    • (2011) Cytogenet Genome Res , vol.134 , pp. 19-26
    • Dodgson, J.B.1    Delany, M.E.2    Cheng, H.H.3
  • 42
    • 77956285927 scopus 로고    scopus 로고
    • Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences
    • 10.1101/gr.106245.110, 2928500, 20534883
    • Shang WH, Hori T, Toyoda A, Kato J, Popendorf K, Sakakibara Y, Fujiyama A, Fukagawa T. Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences. Genome Res 2010, 20:1219-1228. 10.1101/gr.106245.110, 2928500, 20534883.
    • (2010) Genome Res , vol.20 , pp. 1219-1228
    • Shang, W.H.1    Hori, T.2    Toyoda, A.3    Kato, J.4    Popendorf, K.5    Sakakibara, Y.6    Fujiyama, A.7    Fukagawa, T.8
  • 46
    • 34248231212 scopus 로고    scopus 로고
    • The evolution of the avian genome as revealed by comparative molecular cytogenetics
    • 10.1159/000103166, 17675846
    • Griffin DK, Robertson LBW, Tempest HG, Skinner BM. The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenet Genome Res 2007, 117:64-77. 10.1159/000103166, 17675846.
    • (2007) Cytogenet Genome Res , vol.117 , pp. 64-77
    • Griffin, D.K.1    Robertson, L.B.W.2    Tempest, H.G.3    Skinner, B.M.4
  • 49
    • 80053590539 scopus 로고    scopus 로고
    • Children's Hospital of Oakland Research Institute BACPAC Resources Center
    • Children's Hospital of Oakland Research Institute BACPAC Resources Center. , http://bacpac.chori.org
  • 50
    • 80053615820 scopus 로고    scopus 로고
    • Laboratory for Plant Genomics and GENEfinder Genomic Resources
    • Laboratory for Plant Genomics and GENEfinder Genomic Resources. , http://hbz7.tamu.edu
  • 53
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998, 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 54
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998, 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 57
    • 33746216962 scopus 로고    scopus 로고
    • Cross-species overgo hybridization and comparative physical mapping within avian genomes
    • 10.1111/j.1365-2052.2006.01463.x, 16879356
    • Romanov MN, Dodgson JB. Cross-species overgo hybridization and comparative physical mapping within avian genomes. Anim Genet 2006, 37:397-399. 10.1111/j.1365-2052.2006.01463.x, 16879356.
    • (2006) Anim Genet , vol.37 , pp. 397-399
    • Romanov, M.N.1    Dodgson, J.B.2
  • 58
    • 0346445382 scopus 로고    scopus 로고
    • Integration of animal linkage and BAC contig maps using overgo hybridization
    • 10.1159/000075763, 14970717
    • Romanov MN, Price JA, Dodgson JB. Integration of animal linkage and BAC contig maps using overgo hybridization. Cytogenet Genome Res 2003, 102:277-281. 10.1159/000075763, 14970717.
    • (2003) Cytogenet Genome Res , vol.102 , pp. 277-281
    • Romanov, M.N.1    Price, J.A.2    Dodgson, J.B.3
  • 59
    • 79959250295 scopus 로고    scopus 로고
    • Comparative BAC-based mapping in the white-throated sparrow, a novel behavioral genomics model, using interspecies overgo hybridization
    • 10.1186/1756-0500-4-211, 3155834, 21693052
    • Romanov MN, Dodgson JB, Gonser RA, Tuttle EM. Comparative BAC-based mapping in the white-throated sparrow, a novel behavioral genomics model, using interspecies overgo hybridization. BMC Res Notes 2011, 4:211. 10.1186/1756-0500-4-211, 3155834, 21693052.
    • (2011) BMC Res Notes , vol.4 , pp. 211
    • Romanov, M.N.1    Dodgson, J.B.2    Gonser, R.A.3    Tuttle, E.M.4
  • 61
    • 0036226603 scopus 로고    scopus 로고
    • BLAT--the BLAST-like alignment tool
    • 187518, 11932250
    • Kent WJ. BLAT--the BLAST-like alignment tool. Genome Res 2002, 12:656-664. 187518, 11932250.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 62
    • 34547616127 scopus 로고    scopus 로고
    • Chromosomal mapping of chicken mega-telomere arrays to GGA9, 16, 28 and W using a cytogenomic approach
    • 10.1159/000103165, 17675845
    • Delany ME, Gessaro TM, Rodrigue KL, Daniels LM. Chromosomal mapping of chicken mega-telomere arrays to GGA9, 16, 28 and W using a cytogenomic approach. Cytogenet Genome Res 2007, 117:54-63. 10.1159/000103165, 17675845.
    • (2007) Cytogenet Genome Res , vol.117 , pp. 54-63
    • Delany, M.E.1    Gessaro, T.M.2    Rodrigue, K.L.3    Daniels, L.M.4
  • 63
    • 69249222669 scopus 로고    scopus 로고
    • Architecture and organization of chicken microchromosome 16: order of the NOR, MHC-Y, and MHC-B subregions
    • 10.1093/jhered/esp044, 19617522
    • Delany ME, Robinson CM, Goto RM, Miller MM. Architecture and organization of chicken microchromosome 16: order of the NOR, MHC-Y, and MHC-B subregions. J Hered 2009, 100:507-514. 10.1093/jhered/esp044, 19617522.
    • (2009) J Hered , vol.100 , pp. 507-514
    • Delany, M.E.1    Robinson, C.M.2    Goto, R.M.3    Miller, M.M.4
  • 64
    • 77950894645 scopus 로고    scopus 로고
    • Genetic variation exists for telomeric array organization within and among the genomes of normal, immortalized, and transformed chicken systems
    • 10.1007/s10577-009-9082-6, 2793383, 19890728
    • O'Hare TH, Delany ME. Genetic variation exists for telomeric array organization within and among the genomes of normal, immortalized, and transformed chicken systems. Chromosome Res 2009, 17:947-964. 10.1007/s10577-009-9082-6, 2793383, 19890728.
    • (2009) Chromosome Res , vol.17 , pp. 947-964
    • O'Hare, T.H.1    Delany, M.E.2
  • 65
    • 80053595616 scopus 로고    scopus 로고
    • Chromosomal integration of an avian oncogenic herpesvirus reveals telomeric preferences and evidence for lymphoma clonality
    • 10.1186/2042-4280-1-5, 3063227, 21429236
    • Robinson CM, Hunt HD, Cheng HH, Delany ME. Chromosomal integration of an avian oncogenic herpesvirus reveals telomeric preferences and evidence for lymphoma clonality. Herpesviridae 2010, 1:5. 10.1186/2042-4280-1-5, 3063227, 21429236.
    • (2010) Herpesviridae , vol.1 , pp. 5
    • Robinson, C.M.1    Hunt, H.D.2    Cheng, H.H.3    Delany, M.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.