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Volumn 16, Issue 3, 2014, Pages 643-650

Detection and correction of assembly errors of rice Nipponbare reference sequence

Author keywords

BAC end sequences; Bacterial artificial chromosome; Nipponbare; Physical map; Rice

Indexed keywords

CLONE; GENETIC ANALYSIS; GENETIC ENGINEERING; GENOME; MAPPING; MICROBIAL ACTIVITY; RICE;

EID: 84898027865     PISSN: 14358603     EISSN: 14388677     Source Type: Journal    
DOI: 10.1111/plb.12090     Document Type: Article
Times cited : (9)

References (20)
  • 1
    • 27744525806 scopus 로고    scopus 로고
    • Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome
    • Ammiraju J.S., Yu Y., Luo M., Kudrna D., Kim H., Goicoechea J.L., Katayose Y., Matsumoto T., Wu J., Sasaki T., Wing R.A. (2005) Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome. Theoretical and Applied Genetics, 111, 1596-1607.
    • (2005) Theoretical and Applied Genetics , vol.111 , pp. 1596-1607
    • Ammiraju, J.S.1    Yu, Y.2    Luo, M.3    Kudrna, D.4    Kim, H.5    Goicoechea, J.L.6    Katayose, Y.7    Matsumoto, T.8    Wu, J.9    Sasaki, T.10    Wing, R.A.11
  • 4
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature, 436, 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 5
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent W.J. (2002) BLAT - The BLAST-like alignment tool. Genome Research, 12, 656-664.
    • (2002) Genome Research , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 7
    • 34249734822 scopus 로고    scopus 로고
    • Gepard: a rapid and sensitive tool for creating dotplots on genome scale
    • Krumsiek J., Arnold R., Rattei T. (2007) Gepard: a rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics, 23, 1026-1028.
    • (2007) Bioinformatics , vol.23 , pp. 1026-1028
    • Krumsiek, J.1    Arnold, R.2    Rattei, T.3
  • 8
    • 84863065036 scopus 로고    scopus 로고
    • Dynamic intra-japonica subspecies variation and resource application
    • Lin H., Xia P., Wing R.A., Zhang Q., Luo M. (2012) Dynamic intra-japonica subspecies variation and resource application. Molecular Plant, 5, 218-230.
    • (2012) Molecular Plant , vol.5 , pp. 218-230
    • Lin, H.1    Xia, P.2    Wing, R.A.3    Zhang, Q.4    Luo, M.5
  • 13
    • 33748260755 scopus 로고    scopus 로고
    • SyMAP: a system for discovering and viewing syntenic regions of FPC maps
    • Soderlund C., Nelson W., Shoemaker A., Paterson A. (2006) SyMAP: a system for discovering and viewing syntenic regions of FPC maps. Genome Research, 16, 1159-1168.
    • (2006) Genome Research , vol.16 , pp. 1159-1168
    • Soderlund, C.1    Nelson, W.2    Shoemaker, A.3    Paterson, A.4
  • 14
    • 27544478621 scopus 로고    scopus 로고
    • The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications
    • The Rice Chromosomes 11 and 12 Sequencing Consortia
    • The Rice Chromosomes 11 and 12 Sequencing Consortia (2005) The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biology, 3, 20.
    • (2005) BMC Biology , vol.3 , pp. 20
  • 15
    • 77950658346 scopus 로고    scopus 로고
    • Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
    • Tsai I.J., Otto T.D., Berriman M. (2010) Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biology, 11, R41.
    • (2010) Genome Biology , vol.11
    • Tsai, I.J.1    Otto, T.D.2    Berriman, M.3
  • 17
    • 11144300202 scopus 로고    scopus 로고
    • DNA sequence error rates in Genbank records estimated using the mouse genome as a reference
    • Wesche P.L., Gaffney D.J., Keightley P.D. (2004) DNA sequence error rates in Genbank records estimated using the mouse genome as a reference. DNA Sequence, 15, 362-364.
    • (2004) DNA Sequence , vol.15 , pp. 362-364
    • Wesche, P.L.1    Gaffney, D.J.2    Keightley, P.D.3
  • 20
    • 33746280756 scopus 로고    scopus 로고
    • Comparing the whole-genome-shotgun and map-based sequences of the rice genome
    • Yu J., Ni P., Wong G.K. (2006) Comparing the whole-genome-shotgun and map-based sequences of the rice genome. Trends in Plant Science, 11, 387-391.
    • (2006) Trends in Plant Science , vol.11 , pp. 387-391
    • Yu, J.1    Ni, P.2    Wong, G.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.