메뉴 건너뛰기




Volumn 7, Issue 4, 2014, Pages 1104-1115

Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIUM COLONY; COMPETITOR SPECIES; ECOSYSTEM; ESCHERICHIA COLI; FEEDING BEHAVIOR; METHYLOBACTERIUM EXTORQUENS; MICROBIAL COMMUNITY; NONHUMAN; PRIORITY JOURNAL; SALMONELLA ENTERICA; STOICHIOMETRY; SYMBIOSIS; BIOLOGICAL MODEL; MICROFLORA; PHYSIOLOGY; SPATIAL BEHAVIOR; SPATIOTEMPORAL ANALYSIS; CELL METABOLISM; CLASSIFICATION ALGORITHM; CONCEPTUAL FRAMEWORK; CONTROLLED STUDY; MATHEMATICAL COMPUTING; METABOLIC BALANCE; METABOLIC FLUX ANALYSIS; POPULATION DENSITY; PROCESS MODEL;

EID: 84901273253     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2014.03.070     Document Type: Article
Times cited : (418)

References (80)
  • 3
    • 44949225040 scopus 로고    scopus 로고
    • Context-specific metabolic networks are consistent with experiments
    • Becker S.A., Palsson B.O. Context-specific metabolic networks are consistent with experiments. PLoS Comput. Biol. 2008, 4:e1000082.
    • (2008) PLoS Comput. Biol. , vol.4
    • Becker, S.A.1    Palsson, B.O.2
  • 4
    • 0031726425 scopus 로고    scopus 로고
    • Cooperative organization of bacterial colonies: from genotype to morphotype
    • Ben-Jacob E., Cohen I., Gutnick D.L. Cooperative organization of bacterial colonies: from genotype to morphotype. Annu. Rev. Microbiol. 1998, 52:779-806.
    • (1998) Annu. Rev. Microbiol. , vol.52 , pp. 779-806
    • Ben-Jacob, E.1    Cohen, I.2    Gutnick, D.L.3
  • 5
    • 0017664223 scopus 로고
    • Physics of chemoreception
    • Berg H.C., Purcell E.M. Physics of chemoreception. Biophys. J. 1977, 20:193-219.
    • (1977) Biophys. J. , vol.20 , pp. 193-219
    • Berg, H.C.1    Purcell, E.M.2
  • 6
    • 78049304837 scopus 로고    scopus 로고
    • Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes
    • Bordel S., Agren R., Nielsen J. Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes. PLoS Comput. Biol. 2010, 6:e1000859.
    • (2010) PLoS Comput. Biol. , vol.6
    • Bordel, S.1    Agren, R.2    Nielsen, J.3
  • 7
    • 58149458887 scopus 로고    scopus 로고
    • Population dynamics constrain the cooperative evolution of cross-feeding
    • Bull J.J., Harcombe W.R. Population dynamics constrain the cooperative evolution of cross-feeding. PLoS ONE 2009, 4:e4115.
    • (2009) PLoS ONE , vol.4
    • Bull, J.J.1    Harcombe, W.R.2
  • 9
    • 70450278800 scopus 로고    scopus 로고
    • Hybrid cellular automaton modeling of nutrient modulated cell growth in tissue engineering constructs
    • Chung C.A., Lin T.-H., Chen S.-D., Huang H.-I. Hybrid cellular automaton modeling of nutrient modulated cell growth in tissue engineering constructs. J. Theor. Biol. 2010, 262:267-278.
    • (2010) J. Theor. Biol. , vol.262 , pp. 267-278
    • Chung, C.A.1    Lin, T.-H.2    Chen, S.-D.3    Huang, H.-I.4
  • 13
    • 84864048927 scopus 로고    scopus 로고
    • A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks
    • De Martino D., Figliuzzi M., De Martino A., Marinari E. A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks. PLoS Comput. Biol. 2012, 8:e1002562.
    • (2012) PLoS Comput. Biol. , vol.8
    • De Martino, D.1    Figliuzzi, M.2    De Martino, A.3    Marinari, E.4
  • 14
    • 84876965085 scopus 로고    scopus 로고
    • Development of an optimized medium, strain and high-throughput culturing methods for Methylobacterium extorquens
    • Delaney N.F., Kaczmarek M.E., Ward L.M., Swanson P.K., Lee M.-C., Marx C.J. Development of an optimized medium, strain and high-throughput culturing methods for Methylobacterium extorquens. PLoS ONE 2013, 8:e62957.
    • (2013) PLoS ONE , vol.8
    • Delaney, N.F.1    Kaczmarek, M.E.2    Ward, L.M.3    Swanson, P.K.4    Lee, M.-C.5    Marx, C.J.6
  • 15
    • 77951498518 scopus 로고    scopus 로고
    • AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature
    • Denef V.J., Mueller R.S., Banfield J.F. AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME J. 2010, 4:599-610.
    • (2010) ISME J. , vol.4 , pp. 599-610
    • Denef, V.J.1    Mueller, R.S.2    Banfield, J.F.3
  • 16
    • 35348961403 scopus 로고    scopus 로고
    • An ecological and evolutionary perspective on human-microbe mutualism and disease
    • Dethlefsen L., McFall-Ngai M., Relman D.A. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 2007, 449:811-818.
    • (2007) Nature , vol.449 , pp. 811-818
    • Dethlefsen, L.1    McFall-Ngai, M.2    Relman, D.A.3
  • 17
    • 84892741486 scopus 로고    scopus 로고
    • Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities
    • Estrela S., Brown S.P. Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities. PLoS Comput. Biol. 2013, 9:e1003398.
    • (2013) PLoS Comput. Biol. , vol.9
    • Estrela, S.1    Brown, S.P.2
  • 18
    • 44449137093 scopus 로고    scopus 로고
    • The microbial engines that drive Earth's biogeochemical cycles
    • Falkowski P.G., Fenchel T., Delong E.F. The microbial engines that drive Earth's biogeochemical cycles. Science 2008, 320:1034-1039.
    • (2008) Science , vol.320 , pp. 1034-1039
    • Falkowski, P.G.1    Fenchel, T.2    Delong, E.F.3
  • 19
    • 84861149640 scopus 로고    scopus 로고
    • Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1
    • Feng X., Xu Y., Chen Y., Tang Y.J. Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1. PLoS Comput. Biol. 2012, 8:e1002376.
    • (2012) PLoS Comput. Biol. , vol.8
    • Feng, X.1    Xu, Y.2    Chen, Y.3    Tang, Y.J.4
  • 20
    • 80054052364 scopus 로고    scopus 로고
    • A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks
    • Fleming R.M.T., Maes C.M., Saunders M.A., Ye Y., Palsson B.Ø. A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks. J. Theor. Biol. 2012, 7:71-77.
    • (2012) J. Theor. Biol. , vol.7 , pp. 71-77
    • Fleming, R.M.T.1    Maes, C.M.2    Saunders, M.A.3    Ye, Y.4    Palsson, B.Ø.5
  • 22
    • 38649099056 scopus 로고    scopus 로고
    • A hybrid cellular automaton model of clonal evolution in cancer: the emergence of the glycolytic phenotype
    • Gerlee P., Anderson A.R. A hybrid cellular automaton model of clonal evolution in cancer: the emergence of the glycolytic phenotype. J. Theor. Biol. 2008, 250:705-722.
    • (2008) J. Theor. Biol. , vol.250 , pp. 705-722
    • Gerlee, P.1    Anderson, A.R.2
  • 23
    • 26844512919 scopus 로고    scopus 로고
    • Improvement of Escherichia coli production strains by modification of the phosphoenolpyruvate:sugar phosphotransferase system
    • Gosset G. Improvement of Escherichia coli production strains by modification of the phosphoenolpyruvate:sugar phosphotransferase system. Microb. Cell Fact. 2005, 4:14.
    • (2005) Microb. Cell Fact. , vol.4 , pp. 14
    • Gosset, G.1
  • 24
    • 77955972009 scopus 로고    scopus 로고
    • An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure
    • Gudelj I., Weitz J.S., Ferenci T., Claire Horner-Devine M., Marx C.J., Meyer J.R., Forde S.E. An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure. Ecol. Lett. 2010, 13:1073-1084.
    • (2010) Ecol. Lett. , vol.13 , pp. 1073-1084
    • Gudelj, I.1    Weitz, J.S.2    Ferenci, T.3    Claire Horner-Devine, M.4    Marx, C.J.5    Meyer, J.R.6    Forde, S.E.7
  • 25
    • 78349245948 scopus 로고    scopus 로고
    • Novel cooperation experimentally evolved between species
    • Harcombe W. Novel cooperation experimentally evolved between species. Evolution 2010, 64:2166-2172.
    • (2010) Evolution , vol.64 , pp. 2166-2172
    • Harcombe, W.1
  • 26
    • 84879515443 scopus 로고    scopus 로고
    • The ability of flux balance analysis to predict evolution of central metabolism scales with the initial distance to the optimum
    • Harcombe W.R., Delaney N.F., Leiby N., Klitgord N., Marx C.J. The ability of flux balance analysis to predict evolution of central metabolism scales with the initial distance to the optimum. PLoS Comput. Biol. 2013, 9:e1003091.
    • (2013) PLoS Comput. Biol. , vol.9
    • Harcombe, W.R.1    Delaney, N.F.2    Leiby, N.3    Klitgord, N.4    Marx, C.J.5
  • 28
    • 84884230528 scopus 로고    scopus 로고
    • The Three-Species Consortium of Genetically Improved Strains Cupriavidus necator RW112, Burkholderia xenovorans RW118, and Pseudomonas pseudoalcaligenes RW120 Grows with Technical Polychlorobiphenyl, Aroclor 1242
    • Hernández-Sánchez V., Lang E., Wittich R.-M. The Three-Species Consortium of Genetically Improved Strains Cupriavidus necator RW112, Burkholderia xenovorans RW118, and Pseudomonas pseudoalcaligenes RW120 Grows with Technical Polychlorobiphenyl, Aroclor 1242. Front. Microbiol. 2013, 4:90.
    • (2013) Front. Microbiol. , vol.4 , pp. 90
    • Hernández-Sánchez, V.1    Lang, E.2    Wittich, R.-M.3
  • 29
    • 76649104057 scopus 로고    scopus 로고
    • Rapid evolution of stability and productivity at the origin of a microbial mutualism
    • Hillesland K.L., Stahl D.A. Rapid evolution of stability and productivity at the origin of a microbial mutualism. Proc. Natl. Acad. Sci. USA 2010, 107:2124-2129.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 2124-2129
    • Hillesland, K.L.1    Stahl, D.A.2
  • 30
    • 0024109862 scopus 로고
    • Growth of yeast colonies on solid media
    • Kamath R.S., Bungay H.R. Growth of yeast colonies on solid media. J. Gen. Microbiol. 1988, 134:3061-3069.
    • (1988) J. Gen. Microbiol. , vol.134 , pp. 3061-3069
    • Kamath, R.S.1    Bungay, H.R.2
  • 31
    • 84859123293 scopus 로고    scopus 로고
    • A programmable Escherichia coli consortium via tunable symbiosis
    • Kerner A., Park J., Williams A., Lin X.N. A programmable Escherichia coli consortium via tunable symbiosis. PLoS ONE 2012, 7:e34032.
    • (2012) PLoS ONE , vol.7
    • Kerner, A.1    Park, J.2    Williams, A.3    Lin, X.N.4
  • 32
    • 0037062936 scopus 로고    scopus 로고
    • Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors
    • Kerr B., Riley M.A., Feldman M.W., Bohannan B.J. Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 2002, 418:171-174.
    • (2002) Nature , vol.418 , pp. 171-174
    • Kerr, B.1    Riley, M.A.2    Feldman, M.W.3    Bohannan, B.J.4
  • 34
    • 57449090900 scopus 로고    scopus 로고
    • Defined spatial structure stabilizes a synthetic multispecies bacterial community
    • Kim H.J., Boedicker J.Q., Choi J.W., Ismagilov R.F. Defined spatial structure stabilizes a synthetic multispecies bacterial community. Proc. Natl. Acad. Sci. USA 2008, 105:18188-18193.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 18188-18193
    • Kim, H.J.1    Boedicker, J.Q.2    Choi, J.W.3    Ismagilov, R.F.4
  • 35
    • 78649677586 scopus 로고    scopus 로고
    • Environments that induce synthetic microbial ecosystems
    • Klitgord N., Segrè D. Environments that induce synthetic microbial ecosystems. PLoS Comput. Biol. 2010, 6:e1001002.
    • (2010) PLoS Comput. Biol. , vol.6
    • Klitgord, N.1    Segrè, D.2
  • 36
    • 79960939957 scopus 로고    scopus 로고
    • Ecosystems biology of microbial metabolism
    • Klitgord N., Segrè D. Ecosystems biology of microbial metabolism. Curr. Opin. Biotechnol. 2011, 22:541-546.
    • (2011) Curr. Opin. Biotechnol. , vol.22 , pp. 541-546
    • Klitgord, N.1    Segrè, D.2
  • 37
    • 80053273724 scopus 로고    scopus 로고
    • A quantitative test of population genetics using spatiogenetic patterns in bacterial colonies
    • Korolev K.S., Xavier J.B., Nelson D.R., Foster K.R. A quantitative test of population genetics using spatiogenetic patterns in bacterial colonies. Am. Nat. 2011, 178:538-552.
    • (2011) Am. Nat. , vol.178 , pp. 538-552
    • Korolev, K.S.1    Xavier, J.B.2    Nelson, D.R.3    Foster, K.R.4
  • 38
    • 0032436318 scopus 로고    scopus 로고
    • BacSim, a simulator for individual-based modelling of bacterial colony growth
    • Kreft J.U., Booth G., Wimpenny J.W. BacSim, a simulator for individual-based modelling of bacterial colony growth. Microbiology 1998, 144:3275-3287.
    • (1998) Microbiology , vol.144 , pp. 3275-3287
    • Kreft, J.U.1    Booth, G.2    Wimpenny, J.W.3
  • 40
    • 0019419796 scopus 로고
    • The influence of nutrition and temperature on the growth of colonies of Escherichia coli K12
    • Lewis M.W., Wimpenny J.W. The influence of nutrition and temperature on the growth of colonies of Escherichia coli K12. Can. J. Microbiol. 1981, 27:679-684.
    • (1981) Can. J. Microbiol. , vol.27 , pp. 679-684
    • Lewis, M.W.1    Wimpenny, J.W.2
  • 43
    • 33745310267 scopus 로고    scopus 로고
    • Resource competition and social conflict in experimental populations of yeast
    • MacLean R.C., Gudelj I. Resource competition and social conflict in experimental populations of yeast. Nature 2006, 441:498-501.
    • (2006) Nature , vol.441 , pp. 498-501
    • MacLean, R.C.1    Gudelj, I.2
  • 44
    • 0036708443 scopus 로고    scopus 로고
    • Dynamic flux balance analysis of diauxic growth in Escherichia coli
    • Mahadevan R., Edwards J.S., Doyle F.J. Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys. J. 2002, 83:1331-1340.
    • (2002) Biophys. J. , vol.83 , pp. 1331-1340
    • Mahadevan, R.1    Edwards, J.S.2    Doyle, F.J.3
  • 45
    • 58849089274 scopus 로고    scopus 로고
    • Development of a broad-host-range sacB-based vector for unmarked allelic exchange
    • Marx C.J. Development of a broad-host-range sacB-based vector for unmarked allelic exchange. BMC Res. Notes 2008, 1:1.
    • (2008) BMC Res. Notes , vol.1 , pp. 1
    • Marx, C.J.1
  • 46
    • 0015545188 scopus 로고
    • Stability and complexity in model ecosystems
    • May R.M. Stability and complexity in model ecosystems. Monogr. Popul. Biol. 1973, 6:1-235.
    • (1973) Monogr. Popul. Biol. , vol.6 , pp. 1-235
    • May, R.M.1
  • 47
    • 84879002382 scopus 로고    scopus 로고
    • Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli
    • McCloskey D., Palsson B.Ø., Feist A.M. Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. Mol. Syst. Biol. 2013, 9:661.
    • (2013) Mol. Syst. Biol. , vol.9 , pp. 661
    • McCloskey, D.1    Palsson, B.Ø.2    Feist, A.M.3
  • 48
    • 77952483273 scopus 로고    scopus 로고
    • Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments
    • Miller L.D., Mosher J.J., Venkateswaran A., Yang Z.K., Palumbo A.V., Phelps T.J., Podar M., Schadt C.W., Keller M. Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments. BMC Microbiol. 2010, 10:149.
    • (2010) BMC Microbiol. , vol.10 , pp. 149
    • Miller, L.D.1    Mosher, J.J.2    Venkateswaran, A.3    Yang, Z.K.4    Palumbo, A.V.5    Phelps, T.J.6    Podar, M.7    Schadt, C.W.8    Keller, M.9
  • 49
    • 84863995610 scopus 로고    scopus 로고
    • Diversity of interaction types and ecological community stability
    • Mougi A., Kondoh M. Diversity of interaction types and ecological community stability. Science 2012, 337:349-351.
    • (2012) Science , vol.337 , pp. 349-351
    • Mougi, A.1    Kondoh, M.2
  • 53
    • 79952164230 scopus 로고    scopus 로고
    • Microdroplet-enabled highly parallel co-cultivation of microbial communities
    • Park J., Kerner A., Burns M.A., Lin X.N. Microdroplet-enabled highly parallel co-cultivation of microbial communities. PLoS ONE 2011, 6:e17019.
    • (2011) PLoS ONE , vol.6
    • Park, J.1    Kerner, A.2    Burns, M.A.3    Lin, X.N.4
  • 54
    • 0002058827 scopus 로고
    • The Numerical Solution of Parabolic and Elliptic Differential Equations
    • Peaceman D.W., Rachford H.H. The Numerical Solution of Parabolic and Elliptic Differential Equations. J. Soc. Ind. Appl. Math. 1955, 3:28-41.
    • (1955) J. Soc. Ind. Appl. Math. , vol.3 , pp. 28-41
    • Peaceman, D.W.1    Rachford, H.H.2
  • 55
    • 0023239111 scopus 로고
    • Oxygen profiles in, and in the agar beneath, colonies of Bacillus cereus, Staphylococcus albus and Escherichia coli
    • Peters A.C., Wimpenny J.W., Coombs J.P. Oxygen profiles in, and in the agar beneath, colonies of Bacillus cereus, Staphylococcus albus and Escherichia coli. J. Gen. Microbiol. 1987, 133:1257-1263.
    • (1987) J. Gen. Microbiol. , vol.133 , pp. 1257-1263
    • Peters, A.C.1    Wimpenny, J.W.2    Coombs, J.P.3
  • 56
    • 0037417977 scopus 로고    scopus 로고
    • An evolutionary scenario for the transition to undifferentiated multicellularity
    • Pfeiffer T., Bonhoeffer S. An evolutionary scenario for the transition to undifferentiated multicellularity. Proc. Natl. Acad. Sci. USA 2003, 100:1095-1098.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 1095-1098
    • Pfeiffer, T.1    Bonhoeffer, S.2
  • 57
    • 39449089371 scopus 로고    scopus 로고
    • Spatial-temporal modelling of bacterial colony growth on solid media
    • Pipe L.Z., Grimson M.J. Spatial-temporal modelling of bacterial colony growth on solid media. Mol. Biosyst. 2008, 4:192-198.
    • (2008) Mol. Biosyst. , vol.4 , pp. 192-198
    • Pipe, L.Z.1    Grimson, M.J.2
  • 58
    • 0014083610 scopus 로고
    • A kinetic study of the mode of growth of surface colonies of bacteria and fungi
    • Pirt S.J. A kinetic study of the mode of growth of surface colonies of bacteria and fungi. J. Gen. Microbiol. 1967, 47:181-197.
    • (1967) J. Gen. Microbiol. , vol.47 , pp. 181-197
    • Pirt, S.J.1
  • 59
    • 65649105134 scopus 로고    scopus 로고
    • Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
    • Raghunathan A., Reed J., Shin S., Palsson B., Daefler S. Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction. BMC Syst. Biol. 2009, 3:38.
    • (2009) BMC Syst. Biol. , vol.3 , pp. 38
    • Raghunathan, A.1    Reed, J.2    Shin, S.3    Palsson, B.4    Daefler, S.5
  • 60
    • 33847318761 scopus 로고    scopus 로고
    • Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem
    • Ramette A., Tiedje J.M. Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proc. Natl. Acad. Sci. USA 2007, 104:2761-2766.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 2761-2766
    • Ramette, A.1    Tiedje, J.M.2
  • 61
    • 84883361148 scopus 로고    scopus 로고
    • Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools
    • Reznik E., Mehta P., Segrè D. Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools. PLoS Comput. Biol. 2013, 9:e1003195.
    • (2013) PLoS Comput. Biol. , vol.9
    • Reznik, E.1    Mehta, P.2    Segrè, D.3
  • 62
    • 0015540860 scopus 로고
    • Glucose availability and the growth rate of colonies of Pseudomonas fluorescens
    • Rieck V.T., Palumbo S.A., Witter L.D. Glucose availability and the growth rate of colonies of Pseudomonas fluorescens. J. Gen. Microbiol. 1973, 74:1-8.
    • (1973) J. Gen. Microbiol. , vol.74 , pp. 1-8
    • Rieck, V.T.1    Palumbo, S.A.2    Witter, L.D.3
  • 64
    • 5144223827 scopus 로고    scopus 로고
    • Stress and survival of aging Escherichia coli rpoS colonies
    • Saint-Ruf C., Taddei F., Matic I. Stress and survival of aging Escherichia coli rpoS colonies. Genetics 2004, 168:541-546.
    • (2004) Genetics , vol.168 , pp. 541-546
    • Saint-Ruf, C.1    Taddei, F.2    Matic, I.3
  • 65
    • 77954724818 scopus 로고    scopus 로고
    • Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing
    • Salimi F., Zhuang K., Mahadevan R. Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing. Biotechnol. J. 2010, 5:726-738.
    • (2010) Biotechnol. J. , vol.5 , pp. 726-738
    • Salimi, F.1    Zhuang, K.2    Mahadevan, R.3
  • 66
    • 69849084132 scopus 로고    scopus 로고
    • Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation
    • Scheibe T.D., Mahadevan R., Fang Y., Garg S., Long P.E., Lovley D.R. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation. Microb. Biotechnol. 2009, 2:274-286.
    • (2009) Microb. Biotechnol. , vol.2 , pp. 274-286
    • Scheibe, T.D.1    Mahadevan, R.2    Fang, Y.3    Garg, S.4    Long, P.E.5    Lovley, D.R.6
  • 68
    • 0037069467 scopus 로고    scopus 로고
    • Analysis of optimality in natural and perturbed metabolic networks
    • Segrè D., Vitkup D., Church G.M. Analysis of optimality in natural and perturbed metabolic networks. Proc. Natl. Acad. Sci. USA 2002, 99:15112-15117.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 15112-15117
    • Segrè, D.1    Vitkup, D.2    Church, G.M.3
  • 69
    • 33846936445 scopus 로고    scopus 로고
    • Synthetic cooperation in engineered yeast populations
    • Shou W., Ram S., Vilar J.M.G. Synthetic cooperation in engineered yeast populations. Proc. Natl. Acad. Sci. USA 2007, 104:1877-1882.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 1877-1882
    • Shou, W.1    Ram, S.2    Vilar, J.M.G.3
  • 70
    • 0037372799 scopus 로고    scopus 로고
    • Diffusion in biofilms
    • Stewart P.S. Diffusion in biofilms. J. Bacteriol. 2003, 185:1485-1491.
    • (2003) J. Bacteriol. , vol.185 , pp. 1485-1491
    • Stewart, P.S.1
  • 73
  • 75
    • 0018697655 scopus 로고
    • The growth and form of bacterial colonies
    • Wimpenny J.W. The growth and form of bacterial colonies. J. Gen. Microbiol. 1979, 114:483-486.
    • (1979) J. Gen. Microbiol. , vol.114 , pp. 483-486
    • Wimpenny, J.W.1
  • 76
    • 0020614462 scopus 로고
    • Penetration of oxygen into bacterial colonies
    • Wimpenny J.W., Coombs J.P. Penetration of oxygen into bacterial colonies. J. Gen. Microbiol. 1983, 129:1239-1242.
    • (1983) J. Gen. Microbiol. , vol.129 , pp. 1239-1242
    • Wimpenny, J.W.1    Coombs, J.P.2
  • 77
    • 77956415336 scopus 로고    scopus 로고
    • Emergent cooperation in microbial metabolism
    • Wintermute E.H., Silver P.A. Emergent cooperation in microbial metabolism. Mol. Syst. Biol. 2010, 6:407.
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 407
    • Wintermute, E.H.1    Silver, P.A.2
  • 78
    • 33846485152 scopus 로고    scopus 로고
    • Cooperation and conflict in microbial biofilms
    • Xavier J.B., Foster K.R. Cooperation and conflict in microbial biofilms. Proc. Natl. Acad. Sci. USA 2007, 104:876-881.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 876-881
    • Xavier, J.B.1    Foster, K.R.2
  • 79
    • 22744458324 scopus 로고    scopus 로고
    • A framework for multidimensional modelling of activity and structure of multispecies biofilms
    • Xavier J.B., Picioreanu C., van Loosdrecht M.C.M. A framework for multidimensional modelling of activity and structure of multispecies biofilms. Environ. Microbiol. 2005, 7:1085-1103.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1085-1103
    • Xavier, J.B.1    Picioreanu, C.2    van Loosdrecht, M.C.M.3
  • 80
    • 84861180223 scopus 로고    scopus 로고
    • OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities
    • Zomorrodi A.R., Maranas C.D. OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities. PLoS Comput. Biol. 2012, 8:e1002363.
    • (2012) PLoS Comput. Biol. , vol.8
    • Zomorrodi, A.R.1    Maranas, C.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.